Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002012

Physical Location & Seq

Genomic Coordinates Forward (+)

13715590 .. 13716165

Gene Structure 576 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g19240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGCAAATATGGTGGAAAAAAGTGAACTTGGATTACTACGTGTCACTCTACCGTGCTGCGTTCAGTGGCAATTGGGAAGAGGCTAGCAAGTTTCTGGACAATGATCCTCATGCTGCGAAAGCCAGGATCTCGAATTTATCAATGACTGCACTACATGTTGCTGCAAGCGAAGGGCACTCCGAATTCGTAGAGAAATTAGTGAAACGCGTTCATAGGGATGTCCTCGAAATGCAGGATGAAATGGGATTCACACCACTTCACTATGCTGCAATAGGTGGAAGTCTGAGGTCTGCCAAGGCTTTGTTGATGGAAAATCTAAAGTTGGCACAATGTGTAGATGCCGAAGGAAGAACTCCGCTGCTCCTAGCTGCCACTTTCGCTTCTGAGAATAAGGAGTTGGTGTGGTACTTTTTGTTGGTAACTACAAATGAGGAGCCTGGTCATCCTTTTACTGGCCACTGTGCTGCTAACCTAGTCAATATGCTTATTGCCTCAGGTTTCCATGGTAAAAACCACTCTTGTGCACAATGTGGAACAACATCGTTCCTTTTCGCTATCCCTATCATTATAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005886 GO:0006810 GO:0006887 GO:0006888 GO:0006996 GO:0007010 GO:0007163 GO:0008092 GO:0008093 GO:0008104 GO:0008150 GO:0009987 GO:0014731 GO:0016020 GO:0016043 GO:0016192 GO:0016323 GO:0019899 GO:0030011 GO:0030016 GO:0030017 GO:0030507 GO:0030674 GO:0031430 GO:0031672 GO:0032940 GO:0033036 GO:0034613 GO:0035088 GO:0035090 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043292 GO:0044422 GO:0044424 GO:0044425 GO:0044444 GO:0044449 GO:0044459 GO:0044464 GO:0045197 GO:0045199 GO:0046903 GO:0046907 GO:0048193 GO:0051117 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060090 GO:0061245 GO:0070727 GO:0071840 GO:0071944 GO:0072657 GO:0072659 GO:0098590 GO:0099080 GO:0099081 GO:0099512 GO:1990778

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 PGG

Protein Analysis

192

Amino Acids

21.21

Weight (kDa)

6.29

Isoelectric Point (pI)

22.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	16 - 104	4e-12	Ankyrin repeats (3 copies)
Ank_2	PF12796	77 - 138	2.9e-07	Ankyrin repeats (3 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002012)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06040
fragaria_vesca	FvH4_1g08600 FvH4_1g08600 FvH4_1g08610 FvH4_1g08610
malus_domestica	MD02G1090200.v1.1 MD02G1090300.v1.1 MD02G1090400.v1.1 MD15G1216800.v1.1 MD15G1217000.v1.1
prunus_persica	Prupe.7G199500_v2.0.a1 Prupe.7G199600_v2.0.a1 Prupe.7G199800_v2.0.a1 Prupe.7G199800_v2.0.a1
pyrus_communis	pycom02g07210 pycom02g07220 pycom02g07230 pycom15g19230 pycom15g19240
rosa_chinensis	RchiOBHm_Chr2g0093971 RchiOBHm_Chr2g0094821 RchiOBHm_Chr2g0094831 RchiOBHm_Chr5g0043671
rosa_laevigata	RLG00000016524
rosa_multiflora	Rmu_sc0003027.1_g000001 Rmu_sc0006422.1_g000027 Rmu_sc0018486.1_g000002
rosa_roxburghii	Rroxscaffold_1G00075090 Rroxscaffold_2G00146830 Rroxscaffold_2G00146840
rosa_rugosa	Rorug02G0047100 Rorug02G0047100 Rorug02G0054500 Rorug02G0054600 Rorug02G0054700
rosa_samantha	Rh2AG094700 Rh2AG094800 Rh2BG095300 Rh2BG095400 Rh2CG097100 Rh2CG097200 Rh2CG097300 Rh2DG094100 Rh2DG094200 Rh7BG370500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	569
AccII	CGCG	1 cut(s)	207
AciI	CCGC	1 cut(s)	356
AclWI	GGATC	2 cut(s)	98, 134
AcoI	YGGCCR	1 cut(s)	454
AcsI	RAATTY	2 cut(s)	133, 182
AdeI	CACNNNGTG	2 cut(s)	332, 530
AfaI	GTAC	1 cut(s)	407
AfiI	CCNNNNNNNGG	1 cut(s)	452
AflIII	ACRYGT	3 cut(s)	39, 154, 205
AjnI	CCWGG	2 cut(s)	122, 436
AjuI	GAANNNNNNNTTGG	2 cut(s)	380, 412
AleI	CACNNNNGTG	1 cut(s)	519
AluBI	AGCT	1 cut(s)	368
AluI	AGCT	1 cut(s)	368
Alw21I	GWGCWC	1 cut(s)	526
Alw44I	GTGCAC	1 cut(s)	522
AlwI	GGATC	2 cut(s)	98, 134
AoxI	GGCC	1 cut(s)	454
ApaLI	GTGCAC	1 cut(s)	522
ApeKI	GCWGC	7 cut(s)	56, 113, 161, 266, 358, 368, 464
ApoI	RAATTY	2 cut(s)	133, 182
AsuNHI	GCTAGC	1 cut(s)	83
AxyI	CCTNAGG	1 cut(s)	493
BaeGI	GKGCMC	2 cut(s)	177, 526
BalI	TGGCCA	1 cut(s)	456
Bbv12I	GWGCWC	1 cut(s)	526
BbvI	GCAGC	7 cut(s)	43, 100, 148, 253, 345, 355, 451
BccI	CCATC	1 cut(s)	301
BciT130I	CCWGG	2 cut(s)	124, 438
BfaI	CTAG	3 cut(s)	84, 365, 473
BisI	GCNGC	7 cut(s)	57, 114, 162, 267, 359, 369, 465
BlsI	GCNGC	7 cut(s)	58, 115, 163, 268, 360, 370, 466
Bme1390I	CCNGG	2 cut(s)	124, 438
BmiI	GGNNCC	1 cut(s)	435
BmrFI	CCNGG	2 cut(s)	124, 438
BmsI	GCATC	1 cut(s)	328
BmtI	GCTAGC	1 cut(s)	87
BsaAI	YACGTR	1 cut(s)	40
BsaJI	CCNNGG	2 cut(s)	294, 502
BsaXI	ACNNNNNCTCC	2 cut(s)	386, 416
Bsc4I	CCNNNNNNNGG	1 cut(s)	452
Bse1I	ACTGG	1 cut(s)	457
Bse21I	CCTNAGG	1 cut(s)	493
BseBI	CCWGG	2 cut(s)	124, 438
BseDI	CCNNGG	2 cut(s)	294, 502
BseGI	GGATG	3 cut(s)	223, 241, 442
BseLI	CCNNNNNNNGG	1 cut(s)	452
BseMII	CTCAG	3 cut(s)	275, 375, 507
BseNI	ACTGG	1 cut(s)	457
BseRI	GAGGAG	1 cut(s)	446
BseSI	GKGCMC	2 cut(s)	177, 526
BseXI	GCAGC	7 cut(s)	43, 100, 148, 253, 345, 355, 451
BsgI	GTGCAG	1 cut(s)	132
Bsh1236I	CGCG	1 cut(s)	207
BshFI	GGCC	1 cut(s)	456
BsiHKAI	GWGCWC	1 cut(s)	526
BslI	CCNNNNNNNGG	1 cut(s)	452
BsnI	GGCC	1 cut(s)	456
Bsp1286I	GDGCHC	2 cut(s)	177, 526
Bsp143I	GATC	2 cut(s)	103, 126
Bsp19I	CCATGG	1 cut(s)	502
BspACI	CCGC	1 cut(s)	356
BspANI	GGCC	1 cut(s)	456
BspCNI	CTCAG	3 cut(s)	276, 376, 506
BspFNI	CGCG	1 cut(s)	207
BspLI	GGNNCC	1 cut(s)	435
BspOI	GCTAGC	1 cut(s)	87
BspPI	GGATC	2 cut(s)	98, 134
BsrI	ACTGG	1 cut(s)	457
BssECI	CCNNGG	2 cut(s)	294, 502
BssMI	GATC	2 cut(s)	103, 126
BssT1I	CCWWGG	2 cut(s)	294, 502
Bst2UI	CCWGG	2 cut(s)	124, 438
Bst4CI	ACNGT	2 cut(s)	53, 461
Bst6I	CTCTTC	1 cut(s)	72
BstBAI	YACGTR	1 cut(s)	40
BstC8I	GCNNGC	2 cut(s)	85, 166
BstDEI	CTNAG	3 cut(s)	284, 384, 493
BstDSI	CCRYGG	1 cut(s)	502
BstF5I	GGATG	3 cut(s)	223, 241, 442
BstFNI	CGCG	1 cut(s)	207
BstKTI	GATC	2 cut(s)	106, 129
BstMBI	GATC	2 cut(s)	103, 126
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 377
BstNI	CCWGG	2 cut(s)	124, 438
BstNSI	RCATGY	1 cut(s)	158
BstSCI	CCNGG	2 cut(s)	122, 436
BstSLI	GKGCMC	2 cut(s)	177, 526
BstUI	CGCG	1 cut(s)	207
BstV1I	GCAGC	7 cut(s)	43, 100, 148, 253, 345, 355, 451
BstX2I	RGATCY	1 cut(s)	126
BstYI	RGATCY	1 cut(s)	126
Bsu36I	CCTNAGG	1 cut(s)	493
BsuRI	GGCC	1 cut(s)	456
BtgI	CCRYGG	1 cut(s)	502
BtsCI	GGATG	3 cut(s)	223, 241, 442
BtsIMutI	CAGTG	2 cut(s)	70, 457
Cac8I	GCNNGC	2 cut(s)	85, 166
Csp6I	GTAC	1 cut(s)	406
CspCI	CAANNNNNGTGG	1 cut(s)	28
CviAII	CATG	3 cut(s)	110, 155, 503
CviJI	RGCY	6 cut(s)	83, 122, 299, 368, 436, 456
CviKI_1	RGCY	6 cut(s)	83, 122, 299, 368, 436, 456
CviQI	GTAC	1 cut(s)	406
DdeI	CTNAG	3 cut(s)	284, 384, 493
DpnI	GATC	2 cut(s)	105, 128
DpnII	GATC	2 cut(s)	103, 126
DraIII	CACNNNGTG	2 cut(s)	332, 530
EaeI	YGGCCR	1 cut(s)	454
Eam1104I	CTCTTC	1 cut(s)	72
EarI	CTCTTC	1 cut(s)	72
Eco130I	CCWWGG	2 cut(s)	294, 502
Eco81I	CCTNAGG	1 cut(s)	493
EcoRI	GAATTC	1 cut(s)	182
EcoRII	CCWGG	2 cut(s)	122, 436
EcoT14I	CCWWGG	2 cut(s)	294, 502
ErhI	CCWWGG	2 cut(s)	294, 502
FaeI	CATG	3 cut(s)	113, 158, 506
FaiI	YATR	8 cut(s)	10, 111, 156, 213, 264, 482, 504, 569
FatI	CATG	3 cut(s)	109, 154, 502
Fnu4HI	GCNGC	7 cut(s)	57, 114, 162, 267, 359, 369, 465
FokI	GGATG	3 cut(s)	230, 248, 429
Fsp4HI	GCNGC	7 cut(s)	57, 114, 162, 267, 359, 369, 465
FspBI	CTAG	3 cut(s)	84, 365, 473
GluI	GCNGC	7 cut(s)	57, 114, 162, 267, 359, 369, 465
HaeIII	GGCC	1 cut(s)	456
Hin1II	CATG	3 cut(s)	113, 158, 506
HinfI	GANTC	1 cut(s)	246
Hpy166II	GTNNAC	2 cut(s)	25, 524
Hpy188I	TCNGA	3 cut(s)	181, 285, 385
Hpy188III	TCNNGA	2 cut(s)	95, 130
Hpy8I	GTNNAC	2 cut(s)	25, 524
HpyAV	CCTTC	2 cut(s)	164, 338
HpyCH4III	ACNGT	2 cut(s)	53, 461
HpyCH4IV	ACGT	1 cut(s)	39
HpyCH4V	TGCA	6 cut(s)	4, 149, 164, 232, 269, 524
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 377
HpyF3I	CTNAG	3 cut(s)	284, 384, 493
HpySE526I	ACGT	1 cut(s)	39
Hsp92II	CATG	3 cut(s)	113, 158, 506
Kzo9I	GATC	2 cut(s)	103, 126
LmnI	GCTCC	2 cut(s)	366, 433
LpnPI	CCDG	8 cut(s)	80, 109, 136, 218, 423, 438, 450, 480
Lsp1109I	GCAGC	7 cut(s)	43, 100, 148, 253, 345, 355, 451
LweI	GCATC	1 cut(s)	328
MaeI	CTAG	3 cut(s)	84, 365, 473
MaeII	ACGT	1 cut(s)	39
MaeIII	GTNAC	2 cut(s)	42, 418
MalI	GATC	2 cut(s)	105, 128
MboI	GATC	2 cut(s)	103, 126
MboII	GAAGA	2 cut(s)	89, 360
MfeI	CAATTG	1 cut(s)	70
MflI	RGATCY	1 cut(s)	126
MhlI	GDGCHC	2 cut(s)	177, 526
MlsI	TGGCCA	1 cut(s)	456
MluCI	AATT	5 cut(s)	70, 133, 182, 194, 570
MluI	ACGCGT	1 cut(s)	205
MluNI	TGGCCA	1 cut(s)	456
MnlI	CCTC	6 cut(s)	73, 117, 233, 279, 424, 502
Mox20I	TGGCCA	1 cut(s)	456
MscI	TGGCCA	1 cut(s)	456
MslI	CAYNNNNRTG	2 cut(s)	216, 519
Msp20I	TGGCCA	1 cut(s)	456
MspA1I	CMGCKG	1 cut(s)	358
MspR9I	CCNGG	2 cut(s)	124, 438
MunI	CAATTG	1 cut(s)	70
MvaI	CCWGG	2 cut(s)	124, 438
MvnI	CGCG	1 cut(s)	207
MwoI	GCNNNNNNNGC	2 cut(s)	119, 377
NcoI	CCATGG	1 cut(s)	502
NdeII	GATC	2 cut(s)	103, 126
NheI	GCTAGC	1 cut(s)	83
NlaIII	CATG	3 cut(s)	113, 158, 506
NlaIV	GGNNCC	1 cut(s)	435
NmuCI	GTSAC	1 cut(s)	42
NspI	RCATGY	1 cut(s)	158
OliI	CACNNNNGTG	1 cut(s)	519
PciI	ACATGT	1 cut(s)	154
PfeI	GAWTC	1 cut(s)	246
PkrI	GCNGC	7 cut(s)	58, 115, 163, 268, 360, 370, 466
Ppu21I	YACGTR	1 cut(s)	40
PscI	ACATGT	1 cut(s)	154
PsiI	TTATAA	1 cut(s)	569
Psp6I	CCWGG	2 cut(s)	122, 436
PspGI	CCWGG	2 cut(s)	122, 436
PspN4I	GGNNCC	1 cut(s)	435
PsrI	GAACNNNNNNTAC	2 cut(s)	17, 49
PsuI	RGATCY	1 cut(s)	126
RsaI	GTAC	1 cut(s)	407
RsaNI	GTAC	1 cut(s)	406
RseI	CAYNNNNRTG	2 cut(s)	216, 519
SatI	GCNGC	7 cut(s)	57, 114, 162, 267, 359, 369, 465
Sau3AI	GATC	2 cut(s)	103, 126
ScrFI	CCNGG	2 cut(s)	124, 438
SduI	GDGCHC	2 cut(s)	177, 526
SetI	ASST	6 cut(s)	42, 277, 290, 370, 474, 499
SfaNI	GCATC	1 cut(s)	328
SmiMI	CAYNNNNRTG	2 cut(s)	216, 519
Sse9I	AATT	5 cut(s)	70, 133, 182, 194, 570
SsiI	CCGC	1 cut(s)	356
SspMI	CTAG	3 cut(s)	84, 365, 473
StyD4I	CCNGG	2 cut(s)	122, 436
StyI	CCWWGG	2 cut(s)	294, 502
TaaI	ACNGT	2 cut(s)	53, 461
TaiI	ACGT	1 cut(s)	42
TaqI	TCGA	2 cut(s)	131, 225
TasI	AATT	5 cut(s)	70, 133, 182, 194, 570
TfiI	GAWTC	1 cut(s)	246
TscAI	CASTG	2 cut(s)	70, 464
TseFI	GTSAC	1 cut(s)	42
TseI	GCWGC	7 cut(s)	56, 113, 161, 266, 358, 368, 464
Tsp45I	GTSAC	1 cut(s)	42
TspDTI	ATGAA	2 cut(s)	200, 252
TspRI	CASTG	2 cut(s)	70, 464
VneI	GTGCAC	1 cut(s)	522
XapI	RAATTY	2 cut(s)	133, 182
XceI	RCATGY	1 cut(s)	158
XspI	CTAG	3 cut(s)	84, 365, 473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.