pycom02g07210

Leucine-rich repeats, outliers

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Forward (+)
5050771 .. 5053057
2287 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g07210.2

Sequence Viewer

Length: 1611 bp
ATGACGGTTCTTAGGTCTGGCGAAATTGCTCCCCCCAAAACGACGCCTCGGAAGCCCAAGACACCGCTCAAATTAGAGCCCCCCACGCCAGCCCAGACCCATGAGTCCCCCACTCCACCCACCGCTCCGACTTCCTCCTCCTCCCAACCCCAAAACACTAGCCCTAATTTTGCCCCGAATCCCCGAAAGGGCTCTGTCGGGTCGGCCCCTGTCTCGGGAGTGATGCGGCGACGGAGTCTGCGTCTCGCTTCCATGTCTCCGGGTTCTGCCGAAGCGGTGGGGAGAGCGGGTGGCGGGGGAGAAGGTGATGATCGTGATTCGAGTGGAGAGGTGGGTTTTGCTCTGTTTGGGAAGAGGGTTATGGTTGCGGGTGCGGGAGTTGAGGAAGGGACTGAGGAGAAGAAAAGGAAGTTGGAGATCGATATTAATGTGCCGGCTTCCGAATGTGAAGGGGAAGATGGAGAGAGTAAGCAGTTTTTGAGTTTGCGGTCGGGGAAGAAAGTGGTGAAACGGGGAGTGGATGGTAGTAGTAATGGAGCTTTGGTGATTGATTTAGTTGCTGATGAGAATGGTAGCGTGACGAGGGAAGGTGGAGTTGGAAGAGGAGAGAGAAGGAAGAGAAAGTTGGGGGAGAGTGGTTCTGCAGTCAATGGTTTCGATGTGGTAGAGATAGCTTCAGATTCGGATTCGGACACAGAGAGGGCAAGTGAAAATGTCTTGAAGAGTAGTAGTCCTAAAGGGAAGAGGAAGTTGAGTGAAGCCATTGAAGATCTTGAAGATGACGTGACTCCCAGCGAGAATGATACAGAAAAGGGCAGAAGGAGATACAGCAGCAAAGAAAAAGGGAAGGGGAAATTGGTTGGAGAGGCGGATTTATCGAATGCTAACGATGGAGGAGAGAATGTAGCCGTGGACAATGTGTTTTCTGCTCCTATTCACATTGGAGAGAATGTAGCATTGCACGATCAGGGGCAGGTAAATAACGGTAACAGTAATACAAAAGAGAATGTATCAGATGGAAACGTATACATGGAGCGGTTTCGAGAAATAGCTAGGCGAAATGCGTCTCGATTTGCATATTTTTCTGCTGACGAGGAACAGGTGAATCACTTGCCTCCTGATGCTGAAGTGCCACAGGACATCGAAGATTGGCCTGGTCCCTTCTCTACGGCCATCAAAATTATTAAGGATCGAGCAGAAAAAGATGTGCAAGTGCCCTATAAAGACAAGACCAAGCCACCATCAGTGAATTGGGTTCCTAAGAAGTTTCCAGACCGTCCCCTCCCAAAAATTTCGGTTCCCACACTGCAAGATCTATGTTTGTTGGTTCTTGCTAAGAATGCTGATGCAATTGTTTCACTTGACCATGTGGCAGATGCTTTGAGGCACCGGCTAAGTCAGATACTTTGTGATTCTCGAAAAATGAACAGTCATCTGTTCGAACTTCTTGTTCAGAGATCTCCAACAGAGATTCGGTTACGGGATTGCTCATGGATGACTGAGGAGCAGTTTACAAAATCTTTTCAGCAGTGCGACACCGTCAATTTAACAGTGCTACAACTTGATCAGTGTGGGCGCTGTATGCCAGATTATATATTGCATTCTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

537

Amino Acids

58.2

Weight (kDa)

5.83

Isoelectric Point (pI)

54.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 103
Acc36I ACCTGC 1 cut(s) 964
AccB1I GGYRCC 1 cut(s) 1386
AccBSI CCGCTC 4 cut(s) 67, 125, 287, 1036
AccI GTMKAC 1 cut(s) 1026
AclWI GGATC 1 cut(s) 1197
AcoI YGGCCR 1 cut(s) 1170
AcsI RAATTY 1 cut(s) 1290
AcuI CTGAAG 2 cut(s) 660, 1146
AcyI GRCGYC 1 cut(s) 44
AfiI CCNNNNNNNGG 3 cut(s) 188, 214, 215
AgsI TTSAA 3 cut(s) 721, 767, 776
AjiI CACGTC 1 cut(s) 784
AjnI CCWGG 1 cut(s) 1153
AjuI GAANNNNNNNTTGG 8 cut(s) 395, 427, 579, 608, 611, 640, 839, 871
AluBI AGCT 3 cut(s) 539, 674, 1052
AluI AGCT 3 cut(s) 539, 674, 1052
Alw26I GTCTC 4 cut(s) 217, 248, 261, 1071
AlwI GGATC 1 cut(s) 1197
Ama87I CYCGRG 1 cut(s) 214
AoxI GGCC 3 cut(s) 204, 1151, 1170
ApeKI GCWGC 1 cut(s) 831
ApoI RAATTY 1 cut(s) 1290
AseI ATTAAT 1 cut(s) 426
AspLEI GCGC 1 cut(s) 1578
AspS9I GGNCC 2 cut(s) 205, 1157
AsuC2I CCSGG 1 cut(s) 261
AsuHPI GGTGA 4 cut(s) 317, 517, 556, 1114
AsuII TTCGAA 1 cut(s) 1440
AvaI CYCGRG 1 cut(s) 214
AvaII GGWCC 1 cut(s) 1157
BaeGI GKGCMC 1 cut(s) 1218
BanI GGYRCC 1 cut(s) 1386
BanII GRGCYC 2 cut(s) 81, 194
BbvI GCAGC 1 cut(s) 843
BccI CCATC 6 cut(s) 452, 515, 884, 1010, 1181, 1249
BceAI ACGGC 2 cut(s) 893, 1185
BciT130I CCWGG 1 cut(s) 1155
BclI TGATCA 1 cut(s) 1564
BcnI CCSGG 1 cut(s) 261
BcoDI GTCTC 4 cut(s) 217, 248, 261, 1071
BfaI CTAG 2 cut(s) 159, 1053
BfmI CTRYAG 1 cut(s) 642
BfoI RGCGCY 1 cut(s) 1579
BfuAI ACCTGC 1 cut(s) 964
BglII AGATCT 3 cut(s) 769, 1312, 1457
BisI GCNGC 2 cut(s) 227, 832
BlsI GCNGC 2 cut(s) 228, 833
Bme1390I CCNGG 2 cut(s) 261, 1155
Bme18I GGWCC 1 cut(s) 1157
BmeT110I CYCGRG 1 cut(s) 214
BmgBI CACGTC 1 cut(s) 784
BmgT120I GGNCC 2 cut(s) 205, 1157
BmiI GGNNCC 5 cut(s) 207, 1159, 1257, 1299, 1388
BmrFI CCNGG 2 cut(s) 261, 1155
BmsI GCATC 4 cut(s) 213, 1111, 1336, 1366
Bpu14I TTCGAA 1 cut(s) 1440
BpuMI CCSGG 1 cut(s) 261
Bsa29I ATCGAT 1 cut(s) 420
BsaHI GRCGYC 1 cut(s) 44
BsaJI CCNNGG 2 cut(s) 47, 909
Bsc4I CCNNNNNNNGG 3 cut(s) 188, 214, 215
Bse118I RCCGGY 2 cut(s) 433, 1389
Bse3DI GCAATG 1 cut(s) 956
BseBI CCWGG 1 cut(s) 1155
BseCI ATCGAT 1 cut(s) 420
BseDI CCNNGG 2 cut(s) 47, 909
BseGI GGATG 2 cut(s) 526, 1500
BseLI CCNNNNNNNGG 3 cut(s) 188, 214, 215
BseMI GCAATG 1 cut(s) 956
BseMII CTCAG 2 cut(s) 384, 1491
BseRI GAGGAG 6 cut(s) 127, 130, 410, 618, 909, 1517
BseSI GKGCMC 1 cut(s) 1218
BseXI GCAGC 1 cut(s) 843
BseYI CCCAGC 1 cut(s) 791
Bsh1285I CGRYCG 1 cut(s) 491
BshFI GGCC 3 cut(s) 206, 1153, 1172
BshNI GGYRCC 1 cut(s) 1386
BshVI ATCGAT 1 cut(s) 420
BsiEI CGRYCG 1 cut(s) 491
BsiHKCI CYCGRG 1 cut(s) 214
BsiSI CCGG 3 cut(s) 260, 434, 1390
BslFI GGGAC 4 cut(s) 91, 403, 1143, 1263
BslI CCNNNNNNNGG 3 cut(s) 188, 214, 215
BsmAI GTCTC 4 cut(s) 217, 248, 261, 1071
BsmBI CGTCTC 2 cut(s) 248, 1071
BsmFI GGGAC 4 cut(s) 91, 403, 1143, 1263
BsmI GAATGC 3 cut(s) 886, 1345, 1600
BsnI GGCC 3 cut(s) 206, 1153, 1172
BsoBI CYCGRG 1 cut(s) 214
Bsp119I TTCGAA 1 cut(s) 1440
Bsp1286I GDGCHC 3 cut(s) 81, 194, 1218
Bsp143I GATC 8 cut(s) 310, 417, 769, 964, 1189, 1312, 1457, 1564
BspANI GGCC 3 cut(s) 206, 1153, 1172
BspCNI CTCAG 2 cut(s) 385, 1492
BspDI ATCGAT 1 cut(s) 420
BspLI GGNNCC 5 cut(s) 207, 1159, 1257, 1299, 1388
BspMAI CTGCAG 1 cut(s) 646
BspMI ACCTGC 1 cut(s) 964
BspPI GGATC 1 cut(s) 1197
BspT104I TTCGAA 1 cut(s) 1440
BspT107I GGYRCC 1 cut(s) 1386
BsrBI CCGCTC 4 cut(s) 67, 125, 287, 1036
BsrDI GCAATG 1 cut(s) 956
BsrFI RCCGGY 2 cut(s) 433, 1389
BssAI RCCGGY 2 cut(s) 433, 1389
BssECI CCNNGG 2 cut(s) 47, 909
BssMI GATC 8 cut(s) 310, 417, 769, 964, 1189, 1312, 1457, 1564
BssNAI GTATAC 1 cut(s) 1027
BssNI GRCGYC 1 cut(s) 44
Bst1107I GTATAC 1 cut(s) 1027
Bst2UI CCWGG 1 cut(s) 1155
Bst4CI ACNGT 7 cut(s) 7, 986, 992, 1277, 1430, 1540, 1552
Bst6I CTCTTC 5 cut(s) 347, 595, 611, 716, 737
BstACI GRCGYC 1 cut(s) 44
BstBI TTCGAA 1 cut(s) 1440
BstC8I GCNNGC 2 cut(s) 90, 435
BstDEI CTNAG 6 cut(s) 11, 393, 1260, 1335, 1394, 1500
BstDSI CCRYGG 1 cut(s) 909
BstF5I GGATG 2 cut(s) 526, 1500
BstH2I RGCGCY 1 cut(s) 1579
BstHHI GCGC 1 cut(s) 1578
BstKTI GATC 8 cut(s) 313, 420, 772, 967, 1192, 1315, 1460, 1567
BstMAI GTCTC 4 cut(s) 217, 248, 261, 1071
BstMBI GATC 8 cut(s) 310, 417, 769, 964, 1189, 1312, 1457, 1564
BstMCI CGRYCG 1 cut(s) 491
BstMWI GCNNNNNNNGC 4 cut(s) 52, 85, 1340, 1582
BstNI CCWGG 1 cut(s) 1155
BstSCI CCNGG 2 cut(s) 259, 1153
BstSFI CTRYAG 1 cut(s) 642
BstSLI GKGCMC 1 cut(s) 1218
BstV1I GCAGC 1 cut(s) 843
BstX2I RGATCY 3 cut(s) 769, 1312, 1457
BstYI RGATCY 3 cut(s) 769, 1312, 1457
BstZ17I GTATAC 1 cut(s) 1027
Bsu15I ATCGAT 1 cut(s) 420
BsuRI GGCC 3 cut(s) 206, 1153, 1172
BsuTUI ATCGAT 1 cut(s) 420
BtgI CCRYGG 1 cut(s) 909
BtrI CACGTC 1 cut(s) 784
BtsCI GGATG 2 cut(s) 526, 1500
BtsI GCAGTG 2 cut(s) 1304, 1535
BtsIMutI CAGTG 5 cut(s) 1251, 1304, 1535, 1557, 1574
BveI ACCTGC 1 cut(s) 964
Cac8I GCNNGC 2 cut(s) 90, 435
CfoI GCGC 1 cut(s) 1578
Cfr10I RCCGGY 2 cut(s) 433, 1389
Cfr13I GGNCC 2 cut(s) 205, 1157
ClaI ATCGAT 1 cut(s) 420
CseI GACGC 3 cut(s) 52, 230, 1053
CviAII CATG 5 cut(s) 101, 253, 1030, 1367, 1491
DdeI CTNAG 6 cut(s) 11, 393, 1260, 1335, 1394, 1500
DpnI GATC 8 cut(s) 312, 419, 771, 966, 1191, 1314, 1459, 1566
DpnII GATC 8 cut(s) 310, 417, 769, 964, 1189, 1312, 1457, 1564
DrdI GACNNNNNNGTC 1 cut(s) 103
DseDI GACNNNNNNGTC 1 cut(s) 103
EaeI YGGCCR 1 cut(s) 1170
Eam1104I CTCTTC 5 cut(s) 347, 595, 611, 716, 737
EarI CTCTTC 5 cut(s) 347, 595, 611, 716, 737
EciI GGCGGA 1 cut(s) 884
Eco24I GRGCYC 2 cut(s) 81, 194
Eco47I GGWCC 1 cut(s) 1157
Eco57I CTGAAG 2 cut(s) 660, 1146
Eco88I CYCGRG 1 cut(s) 214
EcoRII CCWGG 1 cut(s) 1153
EcoT38I GRGCYC 2 cut(s) 81, 194
Esp3I CGTCTC 2 cut(s) 248, 1071
FaeI CATG 5 cut(s) 104, 256, 1033, 1370, 1494
FaqI GGGAC 4 cut(s) 91, 403, 1143, 1263
FatI CATG 5 cut(s) 100, 252, 1029, 1366, 1490
FauI CCCGC 4 cut(s) 280, 287, 361, 367
FbaI TGATCA 1 cut(s) 1564
FblI GTMKAC 1 cut(s) 1026
Fnu4HI GCNGC 2 cut(s) 227, 832
FokI GGATG 2 cut(s) 533, 1507
FriOI GRGCYC 2 cut(s) 81, 194
Fsp4HI GCNGC 2 cut(s) 227, 832
FspBI CTAG 2 cut(s) 159, 1053
GlaI GCGC 1 cut(s) 1577
GluI GCNGC 2 cut(s) 227, 832
GsaI CCCAGC 1 cut(s) 795
HaeII RGCGCY 1 cut(s) 1579
HaeIII GGCC 3 cut(s) 206, 1153, 1172
HapII CCGG 3 cut(s) 260, 434, 1390
HgaI GACGC 3 cut(s) 52, 230, 1053
HhaI GCGC 1 cut(s) 1578
Hin1I GRCGYC 1 cut(s) 44
Hin1II CATG 5 cut(s) 104, 256, 1033, 1370, 1494
Hin6I GCGC 1 cut(s) 1576
HinP1I GCGC 1 cut(s) 1576
HpaII CCGG 3 cut(s) 260, 434, 1390
HphI GGTGA 4 cut(s) 317, 517, 556, 1114
Hpy166II GTNNAC 3 cut(s) 913, 1027, 1512
Hpy188I TCNGA 9 cut(s) 51, 129, 442, 679, 685, 691, 1015, 1401, 1455
Hpy188III TCNNGA 9 cut(s) 216, 314, 718, 773, 1043, 1068, 1118, 1271, 1416
Hpy8I GTNNAC 3 cut(s) 913, 1027, 1512
Hpy99I CGWCG 2 cut(s) 46, 234
HpyAV CCTTC 8 cut(s) 296, 380, 443, 581, 606, 813, 841, 1171
HpyCH4III ACNGT 7 cut(s) 7, 986, 992, 1277, 1430, 1540, 1552
HpyCH4IV ACGT 2 cut(s) 783, 1023
HpyCH4V TGCA 7 cut(s) 644, 961, 1076, 1210, 1309, 1349, 1600
HpyF10VI GCNNNNNNNGC 4 cut(s) 52, 85, 1340, 1582
HpyF3I CTNAG 6 cut(s) 11, 393, 1260, 1335, 1394, 1500
HpySE526I ACGT 2 cut(s) 783, 1023
Hsp92I GRCGYC 1 cut(s) 44
Hsp92II CATG 5 cut(s) 104, 256, 1033, 1370, 1494
HspAI GCGC 1 cut(s) 1576
KroI GCCGGC 1 cut(s) 433
KroNI GCCGGC 1 cut(s) 435
Ksp22I TGATCA 1 cut(s) 1564
Kzo9I GATC 8 cut(s) 310, 417, 769, 964, 1189, 1312, 1457, 1564
LmnI GCTCC 6 cut(s) 34, 130, 536, 934, 1033, 1504
Lsp1109I GCAGC 1 cut(s) 843
LweI GCATC 4 cut(s) 213, 1111, 1336, 1366
MaeI CTAG 2 cut(s) 159, 1053
MaeII ACGT 2 cut(s) 783, 1023
MaeIII GTNAC 4 cut(s) 577, 784, 986, 1476
MalI GATC 8 cut(s) 312, 419, 771, 966, 1191, 1314, 1459, 1566
MbiI CCGCTC 4 cut(s) 67, 125, 287, 1036
MboI GATC 8 cut(s) 310, 417, 769, 964, 1189, 1312, 1457, 1564
MfeI CAATTG 1 cut(s) 1350
MflI RGATCY 3 cut(s) 769, 1312, 1457
MhlI GDGCHC 3 cut(s) 81, 194, 1218
MluCI AATT 9 cut(s) 24, 71, 166, 854, 1179, 1249, 1290, 1350, 1543
MlyI GAGTC 3 cut(s) 113, 244, 781
MmeI TCCRAC 5 cut(s) 152, 393, 577, 841, 1487
MroNI GCCGGC 1 cut(s) 433
MseI TTAA 3 cut(s) 426, 1185, 1547
MspI CCGG 3 cut(s) 260, 434, 1390
MspR9I CCNGG 2 cut(s) 261, 1155
MunI CAATTG 1 cut(s) 1350
Mva1269I GAATGC 3 cut(s) 886, 1345, 1600
MvaI CCWGG 1 cut(s) 1155
MwoI GCNNNNNNNGC 4 cut(s) 52, 85, 1340, 1582
NaeI GCCGGC 1 cut(s) 435
NciI CCSGG 1 cut(s) 261
NdeII GATC 8 cut(s) 310, 417, 769, 964, 1189, 1312, 1457, 1564
NgoMIV GCCGGC 1 cut(s) 433
NlaIII CATG 5 cut(s) 104, 256, 1033, 1370, 1494
NlaIV GGNNCC 5 cut(s) 207, 1159, 1257, 1299, 1388
NmuCI GTSAC 2 cut(s) 577, 784
NspV TTCGAA 1 cut(s) 1440
PcsI WCGNNNNNNNCGW 1 cut(s) 238
PctI GAATGC 3 cut(s) 886, 1345, 1600
PdiI GCCGGC 1 cut(s) 435
PfeI GAWTC 7 cut(s) 178, 317, 680, 686, 1105, 1412, 1471
PflFI GACNNNGTC 2 cut(s) 234, 1538
PkrI GCNGC 2 cut(s) 228, 833
PleI GAGTC 3 cut(s) 112, 243, 781
PpsI GAGTC 3 cut(s) 112, 243, 781
PshBI ATTAAT 1 cut(s) 426
Psp6I CCWGG 1 cut(s) 1153
PspFI CCCAGC 1 cut(s) 791
PspGI CCWGG 1 cut(s) 1153
PspN4I GGNNCC 5 cut(s) 207, 1159, 1257, 1299, 1388
PspPI GGNCC 2 cut(s) 205, 1157
PstI CTGCAG 1 cut(s) 646
PsuI RGATCY 3 cut(s) 769, 1312, 1457
PsyI GACNNNGTC 2 cut(s) 234, 1538
SaqAI TTAA 3 cut(s) 426, 1185, 1547
SatI GCNGC 2 cut(s) 227, 832
Sau3AI GATC 8 cut(s) 310, 417, 769, 964, 1189, 1312, 1457, 1564
Sau96I GGNCC 2 cut(s) 205, 1157
SchI GAGTC 3 cut(s) 113, 244, 781
ScrFI CCNGG 2 cut(s) 261, 1155
SduI GDGCHC 3 cut(s) 81, 194, 1218
SfaNI GCATC 4 cut(s) 213, 1111, 1336, 1366
SfcI CTRYAG 1 cut(s) 642
SfuI TTCGAA 1 cut(s) 1440
SinI GGWCC 1 cut(s) 1157
Sse9I AATT 9 cut(s) 24, 71, 166, 854, 1179, 1249, 1290, 1350, 1543
SspMI CTAG 2 cut(s) 159, 1053
StyD4I CCNGG 2 cut(s) 259, 1153
TaaI ACNGT 7 cut(s) 7, 986, 992, 1277, 1430, 1540, 1552
TaiI ACGT 2 cut(s) 786, 1026
TasI AATT 9 cut(s) 24, 71, 166, 854, 1179, 1249, 1290, 1350, 1543
TauI GCSGC 1 cut(s) 229
TfiI GAWTC 7 cut(s) 178, 317, 680, 686, 1105, 1412, 1471
Tru1I TTAA 3 cut(s) 426, 1185, 1547
Tru9I TTAA 3 cut(s) 426, 1185, 1547
TscAI CASTG 5 cut(s) 1251, 1311, 1535, 1557, 1574
TseFI GTSAC 2 cut(s) 577, 784
TseI GCWGC 1 cut(s) 831
Tsp45I GTSAC 2 cut(s) 577, 784
TspDTI ATGAA 1 cut(s) 1439
TspGWI ACGGA 1 cut(s) 247
TspRI CASTG 5 cut(s) 1251, 1311, 1535, 1557, 1574
Tth111I GACNNNGTC 2 cut(s) 234, 1538
VpaK11BI GGWCC 1 cut(s) 1157
VspI ATTAAT 1 cut(s) 426
XapI RAATTY 1 cut(s) 1290
XcmI CCANNNNNNNNNTGG 1 cut(s) 1248
XmiI GTMKAC 1 cut(s) 1026
XspI CTAG 2 cut(s) 159, 1053
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.