Rorug02G0054700

Leucine-rich repeats, outliers

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0002012
Physical Location & Seq
Reverse (-)
4209106 .. 4256916
47811 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0054700.1

Sequence Viewer

Length: 672 bp
ATGTTGTCCGCACCATCAAACTGTCGGATTTGTTATCATCTTCGGCGGTGGGGGTGGGGGACGATCCACCGCGATTACGGCAAGTCGCTTATGAGGCCGGTACGCATCTCCCCCGGATCTGTGGGTTGCGGTGTTTGGGGATCTCAAATTGTTTTCACCGGCGGCGTGACACCCAGCTCCCCTTTCGGCTTCAGGACAATAGGTCCTGACTCAGTTTGGCATACAAATGTTTATGCCTTTGAAACTCACACAAATGAGATCAGAAAGCTTGATGCCAATTTACAAGGAGGGAAAATGCAACCTTTGATGGTGGAGCTGGCGGGCAAACTGTACGCTCTTTCCTATAGGCTGGTCGGCCATCCTCCCTCATTTGAGGTATTTGACCCTAAAATAGGCAAGTGGGAAGGTTTGCCCCAGCCTCCATTTTTCCAAGTTGGCTCTCCATATTATGAACATGCCAACTTCTCTTACGCAATCGCCGGCACCAAGATCTTTGCCTCCCATGAAGAATGTCCTGTGTTCTGCTTTGACGTCGCCCATCCAGACAGAGATTGGAGACTGGTCTCTACTATGTGCCGGGGTGGCCCTTTCCCCTTTGATAACAAAGTTGCATTAGTCATGGACCTTCAGGGGGACGATGACAAGAAAATAATGTTTTGCCTACAGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

223

Amino Acids

25.04

Weight (kDa)

8.15

Isoelectric Point (pI)

48.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1668 PF07893 75 - 207 4.1e-10 Protein of unknown function (DUF1668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 534
AccB1I GGYRCC 1 cut(s) 482
AccII CGCG 1 cut(s) 72
AciI CCGC 6 cut(s) 9, 46, 70, 129, 162, 320
AclWI GGATC 3 cut(s) 58, 124, 148
AcoI YGGCCR 1 cut(s) 355
AcuI CTGAAG 2 cut(s) 175, 611
AcyI GRCGYC 1 cut(s) 531
AfaI GTAC 2 cut(s) 102, 332
AfiI CCNNNNNNNGG 2 cut(s) 392, 631
AgsI TTSAA 1 cut(s) 242
AhdI GACNNNNNGTC 1 cut(s) 201
AluBI AGCT 3 cut(s) 177, 268, 316
AluI AGCT 3 cut(s) 177, 268, 316
Alw26I GTCTC 2 cut(s) 550, 568
AlwI GGATC 3 cut(s) 58, 124, 148
AoxI GGCC 3 cut(s) 95, 355, 583
AspS9I GGNCC 3 cut(s) 203, 584, 622
AsuC2I CCSGG 2 cut(s) 114, 578
AsuHPI GGTGA 1 cut(s) 148
AvaII GGWCC 2 cut(s) 203, 622
BanI GGYRCC 1 cut(s) 482
BccI CCATC 4 cut(s) 22, 301, 366, 546
BceAI ACGGC 1 cut(s) 94
BcnI CCSGG 2 cut(s) 114, 578
BcoDI GTCTC 2 cut(s) 550, 568
BfmI CTRYAG 2 cut(s) 343, 662
BglI GCCNNNNNGGC 1 cut(s) 582
BglII AGATCT 1 cut(s) 489
BisI GCNGC 1 cut(s) 163
BlsI GCNGC 1 cut(s) 164
Bme1390I CCNGG 2 cut(s) 114, 578
Bme18I GGWCC 2 cut(s) 203, 622
BmeRI GACNNNNNGTC 1 cut(s) 201
BmgT120I GGNCC 3 cut(s) 203, 584, 622
BmiI GGNNCC 1 cut(s) 484
BmrFI CCNGG 2 cut(s) 114, 578
BmsI GCATC 2 cut(s) 114, 262
BpuMI CCSGG 2 cut(s) 114, 578
BsaHI GRCGYC 1 cut(s) 531
BsaI GGTCTC 1 cut(s) 568
BsaJI CCNNGG 2 cut(s) 112, 577
Bsc4I CCNNNNNNNGG 2 cut(s) 392, 631
Bse118I RCCGGY 3 cut(s) 97, 158, 479
Bse1I ACTGG 1 cut(s) 564
BseDI CCNNGG 2 cut(s) 112, 577
BseGI GGATG 2 cut(s) 358, 538
BseLI CCNNNNNNNGG 2 cut(s) 392, 631
BseMII CTCAG 1 cut(s) 225
BseNI ACTGG 1 cut(s) 564
BseYI CCCAGC 2 cut(s) 173, 414
Bsh1236I CGCG 1 cut(s) 72
BshFI GGCC 3 cut(s) 97, 357, 585
BshNI GGYRCC 1 cut(s) 482
BsiSI CCGG 5 cut(s) 98, 114, 159, 480, 577
BslFI GGGAC 2 cut(s) 73, 647
BslI CCNNNNNNNGG 2 cut(s) 392, 631
BsmAI GTCTC 2 cut(s) 550, 568
BsmFI GGGAC 2 cut(s) 73, 647
BsnI GGCC 3 cut(s) 97, 357, 585
Bso31I GGTCTC 1 cut(s) 568
Bsp143I GATC 5 cut(s) 63, 116, 140, 258, 489
BspACI CCGC 6 cut(s) 9, 46, 70, 129, 162, 320
BspANI GGCC 3 cut(s) 97, 357, 585
BspCNI CTCAG 1 cut(s) 224
BspFNI CGCG 1 cut(s) 72
BspHI TCATGA 1 cut(s) 668
BspLI GGNNCC 1 cut(s) 484
BspPI GGATC 3 cut(s) 58, 124, 148
BspT107I GGYRCC 1 cut(s) 482
BspTNI GGTCTC 1 cut(s) 568
BsrFI RCCGGY 3 cut(s) 97, 158, 479
BsrI ACTGG 1 cut(s) 564
BssAI RCCGGY 3 cut(s) 97, 158, 479
BssECI CCNNGG 2 cut(s) 112, 577
BssMI GATC 5 cut(s) 63, 116, 140, 258, 489
BssNI GRCGYC 1 cut(s) 531
Bst4CI ACNGT 3 cut(s) 23, 330, 666
BstACI GRCGYC 1 cut(s) 531
BstC8I GCNNGC 3 cut(s) 318, 322, 481
BstDEI CTNAG 1 cut(s) 211
BstENI CCTNNNNNAGG 1 cut(s) 390
BstF5I GGATG 2 cut(s) 358, 538
BstFNI CGCG 1 cut(s) 72
BstKTI GATC 5 cut(s) 66, 119, 143, 261, 492
BstMAI GTCTC 2 cut(s) 550, 568
BstMBI GATC 5 cut(s) 63, 116, 140, 258, 489
BstMWI GCNNNNNNNGC 3 cut(s) 78, 94, 582
BstNSI RCATGY 1 cut(s) 458
BstSCI CCNGG 2 cut(s) 112, 576
BstSFI CTRYAG 2 cut(s) 343, 662
BstUI CGCG 1 cut(s) 72
BstX2I RGATCY 3 cut(s) 116, 140, 489
BstYI RGATCY 3 cut(s) 116, 140, 489
BsuRI GGCC 3 cut(s) 97, 357, 585
BtsCI GGATG 2 cut(s) 358, 538
Cac8I GCNNGC 3 cut(s) 318, 322, 481
CciI TCATGA 1 cut(s) 668
Cfr10I RCCGGY 3 cut(s) 97, 158, 479
Cfr13I GGNCC 3 cut(s) 203, 584, 622
Csp6I GTAC 2 cut(s) 101, 331
CviAII CATG 4 cut(s) 455, 503, 619, 669
CviQI GTAC 2 cut(s) 101, 331
DdeI CTNAG 1 cut(s) 211
DpnI GATC 5 cut(s) 65, 118, 142, 260, 491
DpnII GATC 5 cut(s) 63, 116, 140, 258, 489
DriI GACNNNNNGTC 1 cut(s) 201
EaeI YGGCCR 1 cut(s) 355
Eam1105I GACNNNNNGTC 1 cut(s) 201
Eco31I GGTCTC 1 cut(s) 568
Eco47I GGWCC 2 cut(s) 203, 622
Eco57I CTGAAG 2 cut(s) 175, 611
EcoNI CCTNNNNNAGG 1 cut(s) 390
EcoO109I RGGNCCY 1 cut(s) 203
FaeI CATG 4 cut(s) 458, 506, 622, 672
FaqI GGGAC 2 cut(s) 73, 647
FatI CATG 4 cut(s) 454, 502, 618, 668
FauI CCCGC 1 cut(s) 313
Fnu4HI GCNGC 1 cut(s) 163
FokI GGATG 2 cut(s) 345, 525
Fsp4HI GCNGC 1 cut(s) 163
GluI GCNGC 1 cut(s) 163
GsaI CCCAGC 2 cut(s) 177, 418
HaeIII GGCC 3 cut(s) 97, 357, 585
HapII CCGG 5 cut(s) 98, 114, 159, 480, 577
Hin1I GRCGYC 1 cut(s) 531
Hin1II CATG 4 cut(s) 458, 506, 622, 672
HindIII AAGCTT 1 cut(s) 266
HinfI GANTC 1 cut(s) 209
HpaII CCGG 5 cut(s) 98, 114, 159, 480, 577
HphI GGTGA 1 cut(s) 148
Hpy188I TCNGA 2 cut(s) 27, 263
Hpy188III TCNNGA 4 cut(s) 193, 206, 542, 669
Hpy99I CGWCG 1 cut(s) 536
HpyAV CCTTC 2 cut(s) 398, 635
HpyCH4III ACNGT 3 cut(s) 23, 330, 666
HpyCH4IV ACGT 1 cut(s) 531
HpyCH4V TGCA 2 cut(s) 298, 611
HpyF10VI GCNNNNNNNGC 3 cut(s) 78, 94, 582
HpyF3I CTNAG 1 cut(s) 211
HpySE526I ACGT 1 cut(s) 531
Hsp92I GRCGYC 1 cut(s) 531
Hsp92II CATG 4 cut(s) 458, 506, 622, 672
KroI GCCGGC 1 cut(s) 479
KroNI GCCGGC 1 cut(s) 481
Kzo9I GATC 5 cut(s) 63, 116, 140, 258, 489
LmnI GCTCC 2 cut(s) 182, 313
LweI GCATC 2 cut(s) 114, 262
MaeII ACGT 1 cut(s) 531
MaeIII GTNAC 1 cut(s) 166
MalI GATC 5 cut(s) 65, 118, 142, 260, 491
MboI GATC 5 cut(s) 63, 116, 140, 258, 489
MboII GAAGA 2 cut(s) 32, 518
MflI RGATCY 3 cut(s) 116, 140, 489
MluCI AATT 2 cut(s) 147, 277
MlyI GAGTC 1 cut(s) 203
MmeI TCCRAC 1 cut(s) 5
MnlI CCTC 7 cut(s) 87, 281, 367, 372, 376, 429, 508
MroNI GCCGGC 1 cut(s) 479
MslI CAYNNNNRTG 2 cut(s) 225, 252
MspI CCGG 5 cut(s) 98, 114, 159, 480, 577
MspR9I CCNGG 2 cut(s) 114, 578
MvnI CGCG 1 cut(s) 72
MwoI GCNNNNNNNGC 3 cut(s) 78, 94, 582
NaeI GCCGGC 1 cut(s) 481
NciI CCSGG 2 cut(s) 114, 578
NdeII GATC 5 cut(s) 63, 116, 140, 258, 489
NgoMIV GCCGGC 1 cut(s) 479
NlaIII CATG 4 cut(s) 458, 506, 622, 672
NlaIV GGNNCC 1 cut(s) 484
NmuCI GTSAC 1 cut(s) 166
NspI RCATGY 1 cut(s) 458
PagI TCATGA 1 cut(s) 668
PdiI GCCGGC 1 cut(s) 481
PkrI GCNGC 1 cut(s) 164
PleI GAGTC 1 cut(s) 203
PpsI GAGTC 1 cut(s) 203
PpuMI RGGWCCY 1 cut(s) 203
Psp5II RGGWCCY 1 cut(s) 203
PspFI CCCAGC 2 cut(s) 173, 414
PspN4I GGNNCC 1 cut(s) 484
PspPI GGNCC 3 cut(s) 203, 584, 622
PspPPI RGGWCCY 1 cut(s) 203
PsuI RGATCY 3 cut(s) 116, 140, 489
RsaI GTAC 2 cut(s) 102, 332
RsaNI GTAC 2 cut(s) 101, 331
RseI CAYNNNNRTG 2 cut(s) 225, 252
SatI GCNGC 1 cut(s) 163
Sau3AI GATC 5 cut(s) 63, 116, 140, 258, 489
Sau96I GGNCC 3 cut(s) 203, 584, 622
SchI GAGTC 1 cut(s) 203
ScrFI CCNGG 2 cut(s) 114, 578
SetI ASST 9 cut(s) 179, 205, 270, 304, 318, 378, 409, 534, 627
SfaNI GCATC 2 cut(s) 114, 262
SfcI CTRYAG 2 cut(s) 343, 662
SgrAI CRCCGGYG 1 cut(s) 158
SinI GGWCC 2 cut(s) 203, 622
SmiMI CAYNNNNRTG 2 cut(s) 225, 252
Sse9I AATT 2 cut(s) 147, 277
SsiI CCGC 6 cut(s) 9, 46, 70, 129, 162, 320
StyD4I CCNGG 2 cut(s) 112, 576
TaaI ACNGT 3 cut(s) 23, 330, 666
TaiI ACGT 1 cut(s) 534
TasI AATT 2 cut(s) 147, 277
TauI GCSGC 1 cut(s) 165
TseFI GTSAC 1 cut(s) 166
Tsp45I GTSAC 1 cut(s) 166
TspDTI ATGAA 2 cut(s) 465, 519
VpaK11BI GGWCC 2 cut(s) 203, 622
XagI CCTNNNNNAGG 1 cut(s) 390
XceI RCATGY 1 cut(s) 458
XcmI CCANNNNNNNNNTGG 1 cut(s) 549
ZraI GACGTC 1 cut(s) 532
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.