Rorug02G0054600

Leucine-rich repeats, outliers

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0002012
Physical Location & Seq
Reverse (-)
4208718 .. 4209029
312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0054600.1

Sequence Viewer

Length: 312 bp
ATGCCAGTCTTGCCTGATGAATTGGGTTTGCCACAACGCTGTGAATTTTTGCACATTAGAGGTCAGAAAGCGTACCTTGTTGTCACCGAAATTGGGGTCCCTGATGAAGACGCTCCTGCTTATAATGAGCTTAGTACTCATAAGAGACACGGTGCAGTCATTCCATTTCAATTTGAAGTTGATATCACCAAGGTGGACAAGGACAAGAAAAATTGTTTAGCACTCCAATTCATGCCTCTTCGCAGCTTCGAATACCATACCAACCCATCCACTCATCCTGAACCTGAAACGGTTGGTTGCTTTCTGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

103

Amino Acids

11.72

Weight (kDa)

5.43

Isoelectric Point (pI)

54.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 123
AcsI RAATTY 1 cut(s) 44
AfaI GTAC 2 cut(s) 74, 136
AfiI CCNNNNNNNGG 1 cut(s) 93
AgsI TTSAA 2 cut(s) 170, 176
AleI CACNNNNGTG 1 cut(s) 191
AluBI AGCT 2 cut(s) 130, 246
AluI AGCT 2 cut(s) 130, 246
Alw26I GTCTC 1 cut(s) 139
ApeKI GCWGC 1 cut(s) 243
ApoI RAATTY 1 cut(s) 44
ArsI GACNNNNNNTTYG 2 cut(s) 81, 113
AspS9I GGNCC 1 cut(s) 97
AsuHPI GGTGA 2 cut(s) 76, 178
AsuII TTCGAA 1 cut(s) 249
AvaII GGWCC 1 cut(s) 97
BbsI GAAGAC 1 cut(s) 114
BbvI GCAGC 1 cut(s) 255
BccI CCATC 1 cut(s) 274
BcoDI GTCTC 1 cut(s) 139
BisI GCNGC 1 cut(s) 244
BlsI GCNGC 1 cut(s) 245
BmcAI AGTACT 1 cut(s) 136
Bme18I GGWCC 1 cut(s) 97
BmgT120I GGNCC 1 cut(s) 97
BmiI GGNNCC 2 cut(s) 98, 99
BpiI GAAGAC 1 cut(s) 114
Bpu14I TTCGAA 1 cut(s) 249
BsaJI CCNNGG 1 cut(s) 189
Bsc4I CCNNNNNNNGG 1 cut(s) 93
Bse1I ACTGG 1 cut(s) 5
BseDI CCNNGG 1 cut(s) 189
BseGI GGATG 2 cut(s) 266, 274
BseLI CCNNNNNNNGG 1 cut(s) 93
BseNI ACTGG 1 cut(s) 5
BseXI GCAGC 1 cut(s) 255
BsgI GTGCAG 1 cut(s) 174
BslFI GGGAC 1 cut(s) 83
BslI CCNNNNNNNGG 1 cut(s) 93
BsmAI GTCTC 1 cut(s) 139
BsmFI GGGAC 1 cut(s) 83
Bsp119I TTCGAA 1 cut(s) 249
BspLI GGNNCC 2 cut(s) 98, 99
BspT104I TTCGAA 1 cut(s) 249
BsrI ACTGG 1 cut(s) 5
BssECI CCNNGG 1 cut(s) 189
BssT1I CCWWGG 1 cut(s) 189
Bst4CI ACNGT 2 cut(s) 152, 292
Bst6I CTCTTC 1 cut(s) 243
BstBI TTCGAA 1 cut(s) 249
BstDEI CTNAG 1 cut(s) 131
BstF5I GGATG 2 cut(s) 266, 274
BstMAI GTCTC 1 cut(s) 139
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstV1I GCAGC 1 cut(s) 255
BstV2I GAAGAC 1 cut(s) 114
BtsCI GGATG 2 cut(s) 266, 274
Cfr13I GGNCC 1 cut(s) 97
CseI GACGC 1 cut(s) 119
Csp6I GTAC 2 cut(s) 73, 135
CviAII CATG 1 cut(s) 232
CviJI RGCY 2 cut(s) 130, 246
CviKI_1 RGCY 2 cut(s) 130, 246
CviQI GTAC 2 cut(s) 73, 135
DdeI CTNAG 1 cut(s) 131
Eam1104I CTCTTC 1 cut(s) 243
EarI CTCTTC 1 cut(s) 243
Eco130I CCWWGG 1 cut(s) 189
Eco32I GATATC 1 cut(s) 184
Eco47I GGWCC 1 cut(s) 97
EcoO109I RGGNCCY 1 cut(s) 97
EcoRV GATATC 1 cut(s) 184
EcoT14I CCWWGG 1 cut(s) 189
ErhI CCWWGG 1 cut(s) 189
FaeI CATG 1 cut(s) 235
FaiI YATR 4 cut(s) 123, 141, 233, 258
FalI AAGNNNNNCTT 2 cut(s) 60, 92
FaqI GGGAC 1 cut(s) 83
FatI CATG 1 cut(s) 231
Fnu4HI GCNGC 1 cut(s) 244
FokI GGATG 2 cut(s) 253, 261
Fsp4HI GCNGC 1 cut(s) 244
GluI GCNGC 1 cut(s) 244
HgaI GACGC 1 cut(s) 119
Hin1II CATG 1 cut(s) 235
HphI GGTGA 2 cut(s) 76, 178
Hpy166II GTNNAC 1 cut(s) 196
Hpy188I TCNGA 1 cut(s) 66
Hpy188III TCNNGA 1 cut(s) 278
Hpy8I GTNNAC 1 cut(s) 196
HpyCH4III ACNGT 2 cut(s) 152, 292
HpyCH4V TGCA 2 cut(s) 52, 155
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 1 cut(s) 131
Hsp92II CATG 1 cut(s) 235
KflI GGGWCCC 1 cut(s) 97
LmnI GCTCC 1 cut(s) 118
LpnPI CCDG 6 cut(s) 18, 27, 114, 129, 291, 297
Lsp1109I GCAGC 1 cut(s) 255
MaeIII GTNAC 1 cut(s) 82
MboII GAAGA 2 cut(s) 119, 230
MluCI AATT 6 cut(s) 20, 44, 90, 170, 211, 227
MnlI CCTC 2 cut(s) 53, 246
MslI CAYNNNNRTG 1 cut(s) 191
MwoI GCNNNNNNNGC 1 cut(s) 10
NlaIII CATG 1 cut(s) 235
NlaIV GGNNCC 2 cut(s) 98, 99
NmuCI GTSAC 1 cut(s) 82
NspV TTCGAA 1 cut(s) 249
OliI CACNNNNGTG 1 cut(s) 191
PkrI GCNGC 1 cut(s) 245
PpuMI RGGWCCY 1 cut(s) 97
PsiI TTATAA 1 cut(s) 123
Psp5II RGGWCCY 1 cut(s) 97
PspN4I GGNNCC 2 cut(s) 98, 99
PspPI GGNCC 1 cut(s) 97
PspPPI RGGWCCY 1 cut(s) 97
RsaI GTAC 2 cut(s) 74, 136
RsaNI GTAC 2 cut(s) 73, 135
RseI CAYNNNNRTG 1 cut(s) 191
SatI GCNGC 1 cut(s) 244
Sau96I GGNCC 1 cut(s) 97
ScaI AGTACT 1 cut(s) 136
SetI ASST 6 cut(s) 64, 78, 132, 195, 248, 286
SfuI TTCGAA 1 cut(s) 249
SinI GGWCC 1 cut(s) 97
SmiMI CAYNNNNRTG 1 cut(s) 191
Sse9I AATT 6 cut(s) 20, 44, 90, 170, 211, 227
StyI CCWWGG 1 cut(s) 189
TaaI ACNGT 2 cut(s) 152, 292
TaqI TCGA 1 cut(s) 249
TasI AATT 6 cut(s) 20, 44, 90, 170, 211, 227
TatI WGTACW 1 cut(s) 134
TseFI GTSAC 1 cut(s) 82
TseI GCWGC 1 cut(s) 243
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 3 cut(s) 33, 120, 220
VpaK11BI GGWCC 1 cut(s) 97
XapI RAATTY 1 cut(s) 44
ZrmI AGTACT 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.