Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002012

Physical Location & Seq

Genomic Coordinates Reverse (-)

84722204 .. 84726642

Gene Structure 4439 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00146840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1392 bp

ATGAGTTCCGGTGAGAATGGTGTAAATGAGGGCAGAAGGAAGTACAGCAGACAAGAAAAAGGGAAGGAGAAGTTGGTTGGAGGAGCTTTGTTACCGAATGATGATGACAAAGTGGAATTGGGTTTGGGATTACAAGTGTTGAGTTCATTGCACAATGTGGTTCCTAGTCCTACTCAGATAAGGGAGAATGAAGCATTGCAAGATGAAATGCAGGCTAGGAACAGTAATAGAAGAGAGAATGGAAGAGACAGGAATCAATACATGGAACGGTTTCGGGACATAGCCAGGCAAAATGCTTCTCGTTTTGCTCATTTTGATCCTCGAGATGAAGAGGAGAATGATATGCCTCCTCAGGTTGATGTGGAACAAGATGTCAAAGATTGGCCTGGTCCCTTTTCTACTGCTATTAGGATTATGAGAGATGGAGCAGAAAAGAATATGCAAGAGCAGAGGGCCTATACAGGCAAGACAAAACCTGCATTGGTGAACTGGGTTCCCAAGTGTCAGGAACAGGATCGTGCAATATCAAAGAATTTGATCCCCTCATTGCAAGAGTTGTGTTTGTCTGTTCTTGCTAAGAATGCCGATGCAATAGTTTCACTTGAGAGTGTACCAGATGCTTTGAGGCACCAACTCAGTCATCTACTCTGTGATTCTAGAAGAATGAATACTCATATTTTCGAACTTCTTGTTCAAGGATCGCCAACAGAGGTTCGCTTAAGGGATTGCTCATGGTTGACAGAGGAAGAGTTCACAAAATCTTTTCAGCAGTGCGACATCAGCAACTTAACAGTACTACAGCTTGACCAATGTGGGCGCTGTCTGCCAGATTATATATTGAATTCTACCTTAGCTCGGTCATCCAATTGCTTGCCCGTTTTAACTTCTTTGTCCCTCAGTGGTGCATGTCGTCTTTCGGATGTTGGGTTAGGTGCACTTGTTTCTTCTGCCTCTGCACTAAGATCTCTGAATCTCAGCCAGTGCTCGCTTCTCACTTCCTCAAGTATCGACACTTTAGCTAATTCATTGGGATCAGTGCTGAGGGAACTATATTTAAATGATTGCGAAAGCATTAATGCTATGCTGATATTACCAGCCTTAGAGAAGTTTGAGCATTTGGAGGTGTTGTGGCTGCCCGGCATTGAAAATGTTTGTGATGATTTTATTAAGAAGTTTATTACTGCTCGTGGCCACAATTTGAAGGAGCTTATTTTGACTAATTGCGTAAATTTAACAGATTCTTCTGTGAAAGTCATAGCTGAAACTTGTTCTGGGTTATGTGCACTTGACCTAGTTGACTTGCATAAGCTGACAGATTCTACTTTAGGATATCTTGCAAATGGTTGCCGAGCAATTCAAACATTAAAATTTCGTCAAAATTCATTCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_6

Protein Analysis

463

Amino Acids

51.63

Weight (kDa)

5.39

Isoelectric Point (pI)

46.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002012)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06040
fragaria_vesca	FvH4_1g08600 FvH4_1g08600 FvH4_1g08610 FvH4_1g08610
malus_domestica	MD02G1090200.v1.1 MD02G1090300.v1.1 MD02G1090400.v1.1 MD15G1216800.v1.1 MD15G1217000.v1.1
prunus_persica	Prupe.7G199500_v2.0.a1 Prupe.7G199600_v2.0.a1 Prupe.7G199800_v2.0.a1 Prupe.7G199800_v2.0.a1
pyrus_communis	pycom02g07210 pycom02g07220 pycom02g07230 pycom15g19230 pycom15g19240
rosa_chinensis	RchiOBHm_Chr2g0093971 RchiOBHm_Chr2g0094821 RchiOBHm_Chr2g0094831 RchiOBHm_Chr5g0043671
rosa_laevigata	RLG00000016524
rosa_multiflora	Rmu_sc0003027.1_g000001 Rmu_sc0006422.1_g000027 Rmu_sc0018486.1_g000002
rosa_roxburghii	Rroxscaffold_1G00075090 Rroxscaffold_2G00146830 Rroxscaffold_2G00146840
rosa_rugosa	Rorug02G0047100 Rorug02G0047100 Rorug02G0054500 Rorug02G0054600 Rorug02G0054700
rosa_samantha	Rh2AG094700 Rh2AG094800 Rh2BG095300 Rh2BG095400 Rh2CG097100 Rh2CG097200 Rh2CG097300 Rh2DG094100 Rh2DG094200 Rh7BG370500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	484
AccB1I	GGYRCC	1 cut(s)	627
AclWI	GGATC	5 cut(s)	311, 522, 532, 706, 1039
AcoI	YGGCCR	1 cut(s)	1189
AcsI	RAATTY	5 cut(s)	532, 841, 1228, 1367, 1378
AdeI	CACNNNGTG	1 cut(s)	157
AfaI	GTAC	3 cut(s)	44, 612, 795
AfiI	CCNNNNNNNGG	1 cut(s)	855
AflII	CTTAAG	1 cut(s)	718
AgsI	TTSAA	5 cut(s)	695, 841, 1145, 1201, 1358
AjnI	CCWGG	2 cut(s)	284, 385
AjuI	GAANNNNNNNTTGG	2 cut(s)	56, 88
AluBI	AGCT	7 cut(s)	86, 802, 854, 1019, 1207, 1259, 1309
AluI	AGCT	7 cut(s)	86, 802, 854, 1019, 1207, 1259, 1309
Alw21I	GWGCWC	3 cut(s)	937, 986, 1285
Alw26I	GTCTC	1 cut(s)	240
Alw44I	GTGCAC	2 cut(s)	933, 1281
AlwI	GGATC	5 cut(s)	311, 522, 532, 706, 1039
Ama87I	CYCGRG	1 cut(s)	321
AoxI	GGCC	3 cut(s)	383, 453, 1189
ApaLI	GTGCAC	2 cut(s)	933, 1281
ApeKI	GCWGC	1 cut(s)	1132
ApoI	RAATTY	5 cut(s)	532, 841, 1228, 1367, 1378
AseI	ATTAAT	1 cut(s)	1074
Asp700I	GAANNNNTTC	1 cut(s)	270
AspLEI	GCGC	1 cut(s)	819
AspS9I	GGNCC	2 cut(s)	389, 453
AsuC2I	CCSGG	1 cut(s)	1137
AsuHPI	GGTGA	2 cut(s)	23, 496
AsuII	TTCGAA	1 cut(s)	681
AvaI	CYCGRG	1 cut(s)	321
AvaII	GGWCC	1 cut(s)	389
AxyI	CCTNAGG	1 cut(s)	351
BaeGI	GKGCMC	2 cut(s)	937, 1285
BalI	TGGCCA	1 cut(s)	1191
BanI	GGYRCC	1 cut(s)	627
BarI	GAAGNNNNNNTAC	2 cut(s)	652, 684
BauI	CACGAG	1 cut(s)	1185
Bbv12I	GWGCWC	3 cut(s)	937, 986, 1285
BbvCI	CCTCAGC	1 cut(s)	1040
BbvI	GCAGC	1 cut(s)	1119
BccI	CCATC	1 cut(s)	416
BciT130I	CCWGG	2 cut(s)	286, 387
BcnI	CCSGG	1 cut(s)	1137
BcoDI	GTCTC	1 cut(s)	240
BfaI	CTAG	4 cut(s)	165, 216, 657, 1292
BfmI	CTRYAG	1 cut(s)	797
BfoI	RGCGCY	1 cut(s)	820
BfrI	CTTAAG	1 cut(s)	718
BfuAI	ACCTGC	1 cut(s)	484
BglII	AGATCT	1 cut(s)	962
BisI	GCNGC	1 cut(s)	1133
BlsI	GCNGC	1 cut(s)	1134
BmcAI	AGTACT	1 cut(s)	795
Bme1390I	CCNGG	3 cut(s)	286, 387, 1137
Bme18I	GGWCC	1 cut(s)	389
BmeT110I	CYCGRG	1 cut(s)	321
BmgT120I	GGNCC	2 cut(s)	389, 453
BmiI	GGNNCC	4 cut(s)	162, 391, 495, 629
BmrFI	CCNGG	3 cut(s)	286, 387, 1137
BmrI	ACTGGG	1 cut(s)	499
BmsI	GCATC	2 cut(s)	577, 607
BmuI	ACTGGG	1 cut(s)	499
Bpu10I	CCTNAGC	2 cut(s)	850, 1040
Bpu14I	TTCGAA	1 cut(s)	681
BpuEI	CTTGAG	2 cut(s)	623, 985
BpuMI	CCSGG	1 cut(s)	1137
BsaWI	WCCGGW	1 cut(s)	8
BsaXI	ACNNNNNCTCC	2 cut(s)	1112, 1142
Bsc4I	CCNNNNNNNGG	1 cut(s)	855
Bse1I	ACTGG	2 cut(s)	494, 979
Bse21I	CCTNAGG	1 cut(s)	351
Bse3DI	GCAATG	3 cut(s)	146, 194, 545
BseBI	CCWGG	2 cut(s)	286, 387
BseGI	GGATG	2 cut(s)	860, 925
BseLI	CCNNNNNNNGG	1 cut(s)	855
BseMI	GCAATG	3 cut(s)	146, 194, 545
BseMII	CTCAG	6 cut(s)	188, 365, 649, 910, 988, 1031
BseNI	ACTGG	2 cut(s)	494, 979
BseRI	GAGGAG	3 cut(s)	96, 339, 347
BseSI	GKGCMC	2 cut(s)	937, 1285
BseXI	GCAGC	1 cut(s)	1119
BsgI	GTGCAG	1 cut(s)	939
BshFI	GGCC	3 cut(s)	385, 455, 1191
BshNI	GGYRCC	1 cut(s)	627
BsiHKAI	GWGCWC	3 cut(s)	937, 986, 1285
BsiHKCI	CYCGRG	1 cut(s)	321
BsiSI	CCGG	2 cut(s)	9, 1137
BslFI	GGGAC	3 cut(s)	290, 375, 877
BslI	CCNNNNNNNGG	1 cut(s)	855
BsmAI	GTCTC	1 cut(s)	240
BsmFI	GGGAC	3 cut(s)	290, 375, 877
BsmI	GAATGC	1 cut(s)	586
BsnI	GGCC	3 cut(s)	385, 455, 1191
BsoBI	CYCGRG	1 cut(s)	321
Bsp119I	TTCGAA	1 cut(s)	681
Bsp1286I	GDGCHC	3 cut(s)	937, 986, 1285
Bsp143I	GATC	6 cut(s)	316, 514, 537, 698, 962, 1031
BspANI	GGCC	3 cut(s)	385, 455, 1191
BspCNI	CTCAG	6 cut(s)	187, 364, 648, 909, 987, 1032
BspLI	GGNNCC	4 cut(s)	162, 391, 495, 629
BspMI	ACCTGC	1 cut(s)	484
BspPI	GGATC	5 cut(s)	311, 522, 532, 706, 1039
BspT104I	TTCGAA	1 cut(s)	681
BspT107I	GGYRCC	1 cut(s)	627
BspTI	CTTAAG	1 cut(s)	718
BsrDI	GCAATG	3 cut(s)	146, 194, 545
BsrI	ACTGG	2 cut(s)	494, 979
BssMI	GATC	6 cut(s)	316, 514, 537, 698, 962, 1031
BssSI	CACGAG	1 cut(s)	1185
Bst2BI	CACGAG	1 cut(s)	1185
Bst2UI	CCWGG	2 cut(s)	286, 387
Bst4CI	ACNGT	3 cut(s)	224, 270, 793
Bst6I	CTCTTC	4 cut(s)	226, 238, 324, 741
BstAFI	CTTAAG	1 cut(s)	718
BstBI	TTCGAA	1 cut(s)	681
BstC8I	GCNNGC	3 cut(s)	213, 872, 986
BstF5I	GGATG	2 cut(s)	860, 925
BstH2I	RGCGCY	1 cut(s)	820
BstHHI	GCGC	1 cut(s)	819
BstKTI	GATC	6 cut(s)	319, 517, 540, 701, 965, 1034
BstMAI	GTCTC	1 cut(s)	240
BstMBI	GATC	6 cut(s)	316, 514, 537, 698, 962, 1031
BstMWI	GCNNNNNNNGC	3 cut(s)	581, 780, 823
BstNI	CCWGG	2 cut(s)	286, 387
BstNSI	RCATGY	1 cut(s)	909
BstSCI	CCNGG	3 cut(s)	284, 385, 1135
BstSFI	CTRYAG	1 cut(s)	797
BstSLI	GKGCMC	2 cut(s)	937, 1285
BstV1I	GCAGC	1 cut(s)	1119
BstX2I	RGATCY	1 cut(s)	962
BstYI	RGATCY	1 cut(s)	962
Bsu36I	CCTNAGG	1 cut(s)	351
BsuRI	GGCC	3 cut(s)	385, 455, 1191
BtsCI	GGATG	2 cut(s)	860, 925
BtsI	GCAGTG	1 cut(s)	776
BtsIMutI	CAGTG	4 cut(s)	776, 904, 986, 1041
BveI	ACCTGC	1 cut(s)	484
Cac8I	GCNNGC	3 cut(s)	213, 872, 986
CfoI	GCGC	1 cut(s)	819
Cfr13I	GGNCC	2 cut(s)	389, 453
Csp6I	GTAC	3 cut(s)	43, 611, 794
CviAII	CATG	3 cut(s)	262, 732, 906
CviQI	GTAC	3 cut(s)	43, 611, 794
DpnI	GATC	6 cut(s)	318, 516, 539, 700, 964, 1033
DpnII	GATC	6 cut(s)	316, 514, 537, 698, 962, 1031
DraI	TTTAAA	1 cut(s)	1056
DraIII	CACNNNGTG	1 cut(s)	157
EaeI	YGGCCR	1 cut(s)	1189
Eam1104I	CTCTTC	4 cut(s)	226, 238, 324, 741
EarI	CTCTTC	4 cut(s)	226, 238, 324, 741
Eco32I	GATATC	1 cut(s)	1331
Eco47I	GGWCC	1 cut(s)	389
Eco81I	CCTNAGG	1 cut(s)	351
Eco88I	CYCGRG	1 cut(s)	321
EcoO109I	RGGNCCY	1 cut(s)	453
EcoRI	GAATTC	1 cut(s)	841
EcoRII	CCWGG	2 cut(s)	284, 385
EcoRV	GATATC	1 cut(s)	1331
FaeI	CATG	3 cut(s)	265, 735, 909
FaqI	GGGAC	3 cut(s)	290, 375, 877
FatI	CATG	3 cut(s)	261, 731, 905
Fnu4HI	GCNGC	1 cut(s)	1133
FokI	GGATG	2 cut(s)	847, 932
Fsp4HI	GCNGC	1 cut(s)	1133
FspBI	CTAG	4 cut(s)	165, 216, 657, 1292
GlaI	GCGC	1 cut(s)	818
GluI	GCNGC	1 cut(s)	1133
HaeII	RGCGCY	1 cut(s)	820
HaeIII	GGCC	3 cut(s)	385, 455, 1191
HapII	CCGG	2 cut(s)	9, 1137
HhaI	GCGC	1 cut(s)	819
Hin1II	CATG	3 cut(s)	265, 735, 909
Hin6I	GCGC	1 cut(s)	817
HinP1I	GCGC	1 cut(s)	817
HincII	GTYRAC	2 cut(s)	738, 1297
HindII	GTYRAC	2 cut(s)	738, 1297
HinfI	GANTC	5 cut(s)	253, 653, 970, 1238, 1316
HpaII	CCGG	2 cut(s)	9, 1137
HphI	GGTGA	2 cut(s)	23, 496
Hpy166II	GTNNAC	7 cut(s)	487, 611, 738, 753, 935, 1283, 1297
Hpy188I	TCNGA	3 cut(s)	177, 919, 969
Hpy188III	TCNNGA	4 cut(s)	275, 323, 506, 657
Hpy8I	GTNNAC	7 cut(s)	487, 611, 738, 753, 935, 1283, 1297
HpyAV	CCTTC	3 cut(s)	30, 58, 1195
HpyCH4III	ACNGT	3 cut(s)	224, 270, 793
HpyF10VI	GCNNNNNNNGC	3 cut(s)	581, 780, 823
Hsp92II	CATG	3 cut(s)	265, 735, 909
HspAI	GCGC	1 cut(s)	817
Kzo9I	GATC	6 cut(s)	316, 514, 537, 698, 962, 1031
LmnI	GCTCC	3 cut(s)	83, 425, 1204
Lsp1109I	GCAGC	1 cut(s)	1119
LweI	GCATC	2 cut(s)	577, 607
MaeI	CTAG	4 cut(s)	165, 216, 657, 1292
MaeIII	GTNAC	1 cut(s)	90
MalI	GATC	6 cut(s)	318, 516, 539, 700, 964, 1033
MboI	GATC	6 cut(s)	316, 514, 537, 698, 962, 1031
MboII	GAAGA	7 cut(s)	243, 255, 341, 672, 758, 936, 1233
MfeI	CAATTG	1 cut(s)	865
MflI	RGATCY	1 cut(s)	962
MhlI	GDGCHC	3 cut(s)	937, 986, 1285
MlsI	TGGCCA	1 cut(s)	1191
MluNI	TGGCCA	1 cut(s)	1191
MmeI	TCCRAC	1 cut(s)	58
Mox20I	TGGCCA	1 cut(s)	1191
MroXI	GAANNNNTTC	1 cut(s)	270
MscI	TGGCCA	1 cut(s)	1191
MseI	TTAA	8 cut(s)	719, 788, 881, 1055, 1074, 1167, 1232, 1364
Msp20I	TGGCCA	1 cut(s)	1191
MspCI	CTTAAG	1 cut(s)	718
MspI	CCGG	2 cut(s)	9, 1137
MspR9I	CCNGG	3 cut(s)	286, 387, 1137
MunI	CAATTG	1 cut(s)	865
Mva1269I	GAATGC	1 cut(s)	586
MvaI	CCWGG	2 cut(s)	286, 387
MwoI	GCNNNNNNNGC	3 cut(s)	581, 780, 823
NciI	CCSGG	1 cut(s)	1137
NdeII	GATC	6 cut(s)	316, 514, 537, 698, 962, 1031
NlaIII	CATG	3 cut(s)	265, 735, 909
NlaIV	GGNNCC	4 cut(s)	162, 391, 495, 629
NmeAIII	GCCGAG	1 cut(s)	1373
NspI	RCATGY	1 cut(s)	909
NspV	TTCGAA	1 cut(s)	681
PaeR7I	CTCGAG	1 cut(s)	321
PctI	GAATGC	1 cut(s)	586
PdmI	GAANNNNTTC	1 cut(s)	270
PfeI	GAWTC	5 cut(s)	253, 653, 970, 1238, 1316
PkrI	GCNGC	1 cut(s)	1134
PshBI	ATTAAT	1 cut(s)	1074
Psp6I	CCWGG	2 cut(s)	284, 385
PspGI	CCWGG	2 cut(s)	284, 385
PspN4I	GGNNCC	4 cut(s)	162, 391, 495, 629
PspPI	GGNCC	2 cut(s)	389, 453
PsuI	RGATCY	1 cut(s)	962
RsaI	GTAC	3 cut(s)	44, 612, 795
RsaNI	GTAC	3 cut(s)	43, 611, 794
SaqAI	TTAA	8 cut(s)	719, 788, 881, 1055, 1074, 1167, 1232, 1364
SatI	GCNGC	1 cut(s)	1133
Sau3AI	GATC	6 cut(s)	316, 514, 537, 698, 962, 1031
Sau96I	GGNCC	2 cut(s)	389, 453
ScaI	AGTACT	1 cut(s)	795
ScrFI	CCNGG	3 cut(s)	286, 387, 1137
SduI	GDGCHC	3 cut(s)	937, 986, 1285
SfaNI	GCATC	2 cut(s)	577, 607
SfcI	CTRYAG	1 cut(s)	797
Sfr274I	CTCGAG	1 cut(s)	321
SfuI	TTCGAA	1 cut(s)	681
SinI	GGWCC	1 cut(s)	389
SlaI	CTCGAG	1 cut(s)	321
SmiI	ATTTAAAT	1 cut(s)	1056
SmlI	CTYRAG	4 cut(s)	321, 602, 718, 1000
SmoI	CTYRAG	4 cut(s)	321, 602, 718, 1000
SspMI	CTAG	4 cut(s)	165, 216, 657, 1292
StyD4I	CCNGG	3 cut(s)	284, 385, 1135
SwaI	ATTTAAAT	1 cut(s)	1056
TaaI	ACNGT	3 cut(s)	224, 270, 793
TaqI	TCGA	3 cut(s)	322, 681, 1008
TaqII	GACCGA	1 cut(s)	846
TatI	WGTACW	2 cut(s)	42, 793
TfiI	GAWTC	5 cut(s)	253, 653, 970, 1238, 1316
Tru1I	TTAA	8 cut(s)	719, 788, 881, 1055, 1074, 1167, 1232, 1364
Tru9I	TTAA	8 cut(s)	719, 788, 881, 1055, 1074, 1167, 1232, 1364
TscAI	CASTG	4 cut(s)	776, 904, 986, 1041
TseI	GCWGC	1 cut(s)	1132
TspDTI	ATGAA	7 cut(s)	135, 204, 219, 342, 680, 1014, 1371
TspRI	CASTG	4 cut(s)	776, 904, 986, 1041
Vha464I	CTTAAG	1 cut(s)	718
VneI	GTGCAC	2 cut(s)	933, 1281
VpaK11BI	GGWCC	1 cut(s)	389
VspI	ATTAAT	1 cut(s)	1074
XapI	RAATTY	5 cut(s)	532, 841, 1228, 1367, 1378
XbaI	TCTAGA	1 cut(s)	656
XceI	RCATGY	1 cut(s)	909
XhoI	CTCGAG	1 cut(s)	321
XmnI	GAANNNNTTC	1 cut(s)	270
XspI	CTAG	4 cut(s)	165, 216, 657, 1292
ZrmI	AGTACT	1 cut(s)	795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.