Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002012

Physical Location & Seq

Genomic Coordinates Forward (+)

7985938 .. 7989018

Gene Structure 3081 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG094800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGTTGAAGTGAACTTGGATTACTACCTACCACTGTACCATGCTGCATTCCGAGGCAATTGGGAAGATGCTAGACGGTTTTTGGAGCATGATCCTAATGCAGTCAAAGCCAAGATCTCAAATTTGTCAATGACTGCATTACATGTTGCGGCTTGTGAAGGTCACTCGGAATTTGTGGAGAAGATAGTGAAACATATGCCCGCAGATGAACTGGCAGAGCATGATGAAATGGGGTTCACAGCCCTCCACTATGCTGCTATAGGTGGAAACTTGAGGTCTGCTAAGGCATTGCTCAAGGAAAATCCCAAGTTGGCACAAAGTGTAGATACCAAAGGAAGAACTCCACTTCACCTAGCCGCCAGTTTTGCTTCGGAGTGTAAGGAATTGGTTTGGTACCTTTTGTTGGTAACTACAGATGAGGAACCTGGTCATCCCTTCACTGGTCCCTGGGCCTCTAACCTTATGAATGTGCTAATTGCTTCTGGTTTCCATGATATTGCTCTATATCTCCTTCAACAATATCCTAACTTGGCCACTGCTACAGACCAAGAGGACTGCACTCCTTTATATGTCTTGGCAAAGAACCAATCAAACTTCCTTAGTGGCAGTAGGCTTGGATTTTGGGAAAGCTGCATTTACCCATTTATCCCTATTGACGTGGACTATAGACCACCAAACTCAGTGAGAGCTTATGTAGGCAGTCACCATGAAAGCATCCAAAACCTTAACAGAATGCCATCACCAGTACAGAATGGAGCTCTATATTGGTTAAGAAGACTGCTTTGTGGAGCTCTTAAACAAATAGGTCAGTACTTGAACCTCACCCTATGGTGGTGGAGAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005886 GO:0006810 GO:0006887 GO:0006888 GO:0006996 GO:0007010 GO:0007163 GO:0008092 GO:0008093 GO:0008104 GO:0008150 GO:0009987 GO:0014731 GO:0016020 GO:0016043 GO:0016192 GO:0016323 GO:0019899 GO:0030011 GO:0030016 GO:0030017 GO:0030507 GO:0030674 GO:0031430 GO:0031672 GO:0032940 GO:0033036 GO:0034613 GO:0035088 GO:0035090 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043292 GO:0044422 GO:0044424 GO:0044425 GO:0044444 GO:0044449 GO:0044459 GO:0044464 GO:0045197 GO:0045199 GO:0046903 GO:0046907 GO:0048193 GO:0051117 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060090 GO:0061245 GO:0070727 GO:0071840 GO:0071944 GO:0072657 GO:0072659 GO:0098590 GO:0099080 GO:0099081 GO:0099512 GO:1990778

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 PGG

Protein Analysis

281

Amino Acids

31.8

Weight (kDa)

6.04

Isoelectric Point (pI)

40.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	73 - 134	2.4e-10	Ankyrin repeats (3 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002012)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06040
fragaria_vesca	FvH4_1g08600 FvH4_1g08600 FvH4_1g08610 FvH4_1g08610
malus_domestica	MD02G1090200.v1.1 MD02G1090300.v1.1 MD02G1090400.v1.1 MD15G1216800.v1.1 MD15G1217000.v1.1
prunus_persica	Prupe.7G199500_v2.0.a1 Prupe.7G199600_v2.0.a1 Prupe.7G199800_v2.0.a1 Prupe.7G199800_v2.0.a1
pyrus_communis	pycom02g07210 pycom02g07220 pycom02g07230 pycom15g19230 pycom15g19240
rosa_chinensis	RchiOBHm_Chr2g0093971 RchiOBHm_Chr2g0094821 RchiOBHm_Chr2g0094831 RchiOBHm_Chr5g0043671
rosa_laevigata	RLG00000016524
rosa_multiflora	Rmu_sc0003027.1_g000001 Rmu_sc0006422.1_g000027 Rmu_sc0018486.1_g000002
rosa_roxburghii	Rroxscaffold_1G00075090 Rroxscaffold_2G00146830 Rroxscaffold_2G00146840
rosa_rugosa	Rorug02G0047100 Rorug02G0047100 Rorug02G0054500 Rorug02G0054600 Rorug02G0054700
rosa_samantha	Rh2AG094700 Rh2AG094800 Rh2BG095300 Rh2BG095400 Rh2CG097100 Rh2CG097200 Rh2CG097300 Rh2DG094100 Rh2DG094200 Rh7BG370500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	393
AccB1I	GGYRCC	1 cut(s)	393
AciI	CCGC	3 cut(s)	149, 201, 357
AclWI	GGATC	1 cut(s)	86
AcoI	YGGCCR	1 cut(s)	531
AcsI	RAATTY	2 cut(s)	121, 170
AdeI	CACNNNGTG	1 cut(s)	320
AfaI	GTAC	4 cut(s)	38, 395, 747, 812
AfiI	CCNNNNNNNGG	3 cut(s)	403, 440, 831
AflIII	ACRYGT	1 cut(s)	142
AgsI	TTSAA	3 cut(s)	8, 515, 817
AjiI	CACGTC	1 cut(s)	658
AjnI	CCWGG	2 cut(s)	424, 446
AluBI	AGCT	4 cut(s)	630, 689, 758, 791
AluI	AGCT	4 cut(s)	630, 689, 758, 791
Alw21I	GWGCWC	2 cut(s)	760, 793
AlwI	GGATC	1 cut(s)	86
AoxI	GGCC	2 cut(s)	450, 531
ApeKI	GCWGC	3 cut(s)	44, 254, 630
ApoI	RAATTY	2 cut(s)	121, 170
Asp718I	GGTACC	1 cut(s)	393
AspS9I	GGNCC	2 cut(s)	443, 450
AsuHPI	GGTGA	4 cut(s)	341, 695, 732, 814
AvaII	GGWCC	1 cut(s)	443
BaeI	ACNNNNGTAYC	2 cut(s)	20, 53
BalI	TGGCCA	1 cut(s)	533
BanI	GGYRCC	1 cut(s)	393
BanII	GRGCYC	2 cut(s)	760, 793
BbsI	GAAGAC	1 cut(s)	781
Bbv12I	GWGCWC	2 cut(s)	760, 793
BbvI	GCAGC	3 cut(s)	31, 241, 617
BccI	CCATC	1 cut(s)	745
BciT130I	CCWGG	2 cut(s)	426, 448
BfaI	CTAG	3 cut(s)	72, 353, 844
BfmI	CTRYAG	4 cut(s)	258, 411, 540, 664
BglII	AGATCT	1 cut(s)	114
BisI	GCNGC	5 cut(s)	45, 150, 255, 357, 631
BlsI	GCNGC	5 cut(s)	46, 151, 256, 358, 632
BmcAI	AGTACT	1 cut(s)	812
Bme1390I	CCNGG	2 cut(s)	426, 448
Bme18I	GGWCC	1 cut(s)	443
BmgBI	CACGTC	1 cut(s)	658
BmgT120I	GGNCC	2 cut(s)	443, 450
BmiI	GGNNCC	3 cut(s)	395, 423, 445
BmrFI	CCNGG	2 cut(s)	426, 448
BmsI	GCATC	2 cut(s)	58, 723
BpiI	GAAGAC	1 cut(s)	781
Bpu10I	CCTNAGC	1 cut(s)	282
BpuEI	CTTGAG	2 cut(s)	278, 292
BsaJI	CCNNGG	3 cut(s)	52, 446, 447
Bsc4I	CCNNNNNNNGG	3 cut(s)	403, 440, 831
Bse1I	ACTGG	4 cut(s)	216, 360, 445, 743
Bse3DI	GCAATG	1 cut(s)	287
BseBI	CCWGG	2 cut(s)	426, 448
BseDI	CCNNGG	3 cut(s)	52, 446, 447
BseGI	GGATG	2 cut(s)	430, 714
BseLI	CCNNNNNNNGG	3 cut(s)	403, 440, 831
BseMI	GCAATG	1 cut(s)	287
BseMII	CTCAG	1 cut(s)	693
BseNI	ACTGG	4 cut(s)	216, 360, 445, 743
BseXI	GCAGC	3 cut(s)	31, 241, 617
BsgI	GTGCAG	1 cut(s)	541
BshFI	GGCC	2 cut(s)	452, 533
BshNI	GGYRCC	1 cut(s)	393
BsiHKAI	GWGCWC	2 cut(s)	760, 793
BslFI	GGGAC	1 cut(s)	429
BslI	CCNNNNNNNGG	3 cut(s)	403, 440, 831
BsmFI	GGGAC	1 cut(s)	429
BsmI	GAATGC	2 cut(s)	47, 738
BsnI	GGCC	2 cut(s)	452, 533
Bsp1286I	GDGCHC	2 cut(s)	760, 793
Bsp143I	GATC	2 cut(s)	91, 114
BspACI	CCGC	3 cut(s)	149, 201, 357
BspANI	GGCC	2 cut(s)	452, 533
BspCNI	CTCAG	1 cut(s)	692
BspLI	GGNNCC	3 cut(s)	395, 423, 445
BspPI	GGATC	1 cut(s)	86
BspT107I	GGYRCC	1 cut(s)	393
BsrDI	GCAATG	1 cut(s)	287
BsrI	ACTGG	4 cut(s)	216, 360, 445, 743
BssECI	CCNNGG	3 cut(s)	52, 446, 447
BssMI	GATC	2 cut(s)	91, 114
Bst2UI	CCWGG	2 cut(s)	426, 448
Bst4CI	ACNGT	2 cut(s)	36, 78
BstC8I	GCNNGC	1 cut(s)	201
BstDEI	CTNAG	3 cut(s)	282, 599, 679
BstF5I	GGATG	2 cut(s)	430, 714
BstKTI	GATC	2 cut(s)	94, 117
BstMBI	GATC	2 cut(s)	91, 114
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 365
BstNI	CCWGG	2 cut(s)	426, 448
BstNSI	RCATGY	1 cut(s)	146
BstSCI	CCNGG	2 cut(s)	424, 446
BstSFI	CTRYAG	4 cut(s)	258, 411, 540, 664
BstV1I	GCAGC	3 cut(s)	31, 241, 617
BstV2I	GAAGAC	1 cut(s)	781
BstX2I	RGATCY	1 cut(s)	114
BstYI	RGATCY	1 cut(s)	114
BsuRI	GGCC	2 cut(s)	452, 533
BtrI	CACGTC	1 cut(s)	658
BtsCI	GGATG	2 cut(s)	430, 714
BtsI	GCAGTG	1 cut(s)	534
BtsIMutI	CAGTG	4 cut(s)	32, 438, 534, 687
Cac8I	GCNNGC	1 cut(s)	201
Cfr13I	GGNCC	2 cut(s)	443, 450
CsiI	ACCWGGT	1 cut(s)	424
Csp6I	GTAC	4 cut(s)	37, 394, 746, 811
CviAII	CATG	6 cut(s)	41, 89, 143, 221, 491, 707
CviQI	GTAC	4 cut(s)	37, 394, 746, 811
DdeI	CTNAG	3 cut(s)	282, 599, 679
DpnI	GATC	2 cut(s)	93, 116
DpnII	GATC	2 cut(s)	91, 114
DraIII	CACNNNGTG	1 cut(s)	320
EaeI	YGGCCR	1 cut(s)	531
Ecl136II	GAGCTC	2 cut(s)	758, 791
Eco24I	GRGCYC	2 cut(s)	760, 793
Eco47I	GGWCC	1 cut(s)	443
Eco53kI	GAGCTC	2 cut(s)	758, 791
EcoICRI	GAGCTC	2 cut(s)	758, 791
EcoRII	CCWGG	2 cut(s)	424, 446
EcoT38I	GRGCYC	2 cut(s)	760, 793
FaeI	CATG	6 cut(s)	44, 92, 146, 224, 494, 710
FaqI	GGGAC	1 cut(s)	429
FatI	CATG	6 cut(s)	40, 88, 142, 220, 490, 706
FauI	CCCGC	1 cut(s)	208
FauNDI	CATATG	1 cut(s)	195
Fnu4HI	GCNGC	5 cut(s)	45, 150, 255, 357, 631
FokI	GGATG	2 cut(s)	417, 701
FriOI	GRGCYC	2 cut(s)	760, 793
Fsp4HI	GCNGC	5 cut(s)	45, 150, 255, 357, 631
FspBI	CTAG	3 cut(s)	72, 353, 844
GluI	GCNGC	5 cut(s)	45, 150, 255, 357, 631
HaeIII	GGCC	2 cut(s)	452, 533
Hin1II	CATG	6 cut(s)	44, 92, 146, 224, 494, 710
HinfI	GANTC	1 cut(s)	840
HphI	GGTGA	4 cut(s)	341, 695, 732, 814
Hpy166II	GTNNAC	3 cut(s)	13, 237, 661
Hpy188I	TCNGA	3 cut(s)	53, 169, 373
Hpy8I	GTNNAC	3 cut(s)	13, 237, 661
HpyAV	CCTTC	3 cut(s)	152, 445, 521
HpyCH4III	ACNGT	2 cut(s)	36, 78
HpyCH4IV	ACGT	1 cut(s)	657
HpyCH4V	TGCA	5 cut(s)	47, 101, 137, 558, 633
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 365
HpyF3I	CTNAG	3 cut(s)	282, 599, 679
HpySE526I	ACGT	1 cut(s)	657
Hsp92II	CATG	6 cut(s)	44, 92, 146, 224, 494, 710
KpnI	GGTACC	1 cut(s)	397
Kzo9I	GATC	2 cut(s)	91, 114
LmnI	GCTCC	3 cut(s)	85, 755, 788
LpnPI	CCDG	9 cut(s)	197, 373, 411, 426, 433, 438, 460, 468, 756
Lsp1109I	GCAGC	3 cut(s)	31, 241, 617
LweI	GCATC	2 cut(s)	58, 723
MabI	ACCWGGT	1 cut(s)	424
MaeI	CTAG	3 cut(s)	72, 353, 844
MaeII	ACGT	1 cut(s)	657
MaeIII	GTNAC	3 cut(s)	161, 406, 701
MalI	GATC	2 cut(s)	93, 116
MboI	GATC	2 cut(s)	91, 114
MboII	GAAGA	4 cut(s)	77, 193, 348, 786
MfeI	CAATTG	1 cut(s)	58
MflI	RGATCY	1 cut(s)	114
MhlI	GDGCHC	2 cut(s)	760, 793
MlsI	TGGCCA	1 cut(s)	533
MluCI	AATT	5 cut(s)	58, 121, 170, 383, 474
MluNI	TGGCCA	1 cut(s)	533
MnlI	CCTC	7 cut(s)	47, 254, 267, 412, 463, 544, 830
Mox20I	TGGCCA	1 cut(s)	533
MscI	TGGCCA	1 cut(s)	533
MseI	TTAA	3 cut(s)	726, 770, 795
Msp20I	TGGCCA	1 cut(s)	533
MspR9I	CCNGG	2 cut(s)	426, 448
MunI	CAATTG	1 cut(s)	58
Mva1269I	GAATGC	2 cut(s)	47, 738
MvaI	CCWGG	2 cut(s)	426, 448
MwoI	GCNNNNNNNGC	2 cut(s)	107, 365
NdeI	CATATG	1 cut(s)	195
NdeII	GATC	2 cut(s)	91, 114
NlaIII	CATG	6 cut(s)	44, 92, 146, 224, 494, 710
NlaIV	GGNNCC	3 cut(s)	395, 423, 445
NmuCI	GTSAC	2 cut(s)	161, 701
NspI	RCATGY	1 cut(s)	146
PasI	CCCWGGG	1 cut(s)	447
PciI	ACATGT	1 cut(s)	142
PctI	GAATGC	2 cut(s)	47, 738
PfeI	GAWTC	1 cut(s)	840
PkrI	GCNGC	5 cut(s)	46, 151, 256, 358, 632
PscI	ACATGT	1 cut(s)	142
Psp124BI	GAGCTC	2 cut(s)	760, 793
Psp6I	CCWGG	2 cut(s)	424, 446
PspGI	CCWGG	2 cut(s)	424, 446
PspN4I	GGNNCC	3 cut(s)	395, 423, 445
PspPI	GGNCC	2 cut(s)	443, 450
PsrI	GAACNNNNNNTAC	1 cut(s)	37
PsuI	RGATCY	1 cut(s)	114
RsaI	GTAC	4 cut(s)	38, 395, 747, 812
RsaNI	GTAC	4 cut(s)	37, 394, 746, 811
SacI	GAGCTC	2 cut(s)	760, 793
SaqAI	TTAA	3 cut(s)	726, 770, 795
SatI	GCNGC	5 cut(s)	45, 150, 255, 357, 631
Sau3AI	GATC	2 cut(s)	91, 114
Sau96I	GGNCC	2 cut(s)	443, 450
ScaI	AGTACT	1 cut(s)	812
ScrFI	CCNGG	2 cut(s)	426, 448
SduI	GDGCHC	2 cut(s)	760, 793
SexAI	ACCWGGT	1 cut(s)	424
SfaNI	GCATC	2 cut(s)	58, 723
SfcI	CTRYAG	4 cut(s)	258, 411, 540, 664
SinI	GGWCC	1 cut(s)	443
SmlI	CTYRAG	2 cut(s)	271, 293
SmoI	CTYRAG	2 cut(s)	271, 293
Sse9I	AATT	5 cut(s)	58, 121, 170, 383, 474
SsiI	CCGC	3 cut(s)	149, 201, 357
SspMI	CTAG	3 cut(s)	72, 353, 844
SstI	GAGCTC	2 cut(s)	760, 793
StyD4I	CCNGG	2 cut(s)	424, 446
TaaI	ACNGT	2 cut(s)	36, 78
TaiI	ACGT	1 cut(s)	660
TasI	AATT	5 cut(s)	58, 121, 170, 383, 474
TatI	WGTACW	2 cut(s)	745, 810
TauI	GCSGC	2 cut(s)	152, 359
TfiI	GAWTC	1 cut(s)	840
Tru1I	TTAA	3 cut(s)	726, 770, 795
Tru9I	TTAA	3 cut(s)	726, 770, 795
TscAI	CASTG	4 cut(s)	39, 445, 541, 687
TseFI	GTSAC	2 cut(s)	161, 701
TseI	GCWGC	3 cut(s)	44, 254, 630
Tsp45I	GTSAC	2 cut(s)	161, 701
TspDTI	ATGAA	4 cut(s)	222, 240, 479, 723
TspRI	CASTG	4 cut(s)	39, 445, 541, 687
VpaK11BI	GGWCC	1 cut(s)	443
XapI	RAATTY	2 cut(s)	121, 170
XceI	RCATGY	1 cut(s)	146
XspI	CTAG	3 cut(s)	72, 353, 844
ZrmI	AGTACT	1 cut(s)	812

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.