Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002012

Physical Location & Seq

Genomic Coordinates Forward (+)

7513096 .. 7514883

Gene Structure 1788 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG095400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGCACTTCCAGACAAGGAAATCACACAATTAGCGTTGGATGTTGAGCAAAGTCCTAGTACTGTTGCTGCTCGTATCGCGTATCTCAGAACCGGTGGAAACCAATCTTCTGCAGCAAGAACTATGTCAACCCGGCATGAAAGTTCTGCTGAAGATTTGAACTTGGATTTCTACCTACCACTGTACCATGCTGCATTCCGAGGCAATTGGGAAGATGCTAGACGGTTTTTGGAGCATGATCCTAATGCAGTCAAAGCCAAGATCTCAAATTTGTCAATGACTGCATTACATGTTGCGGCTTGTGAAGGTCACTCGGAATTTGTGGAGAAGATAGTGAAACATATGCCTGCAGATGAACTGGCAGAGCATGATGAAATGGGGTTCACAGCCCTCCACTATGCTGCTATAGGTGGAAACTTGAGGTCTGCTAAGGCATTGCTCAAGGAAAATCCCAAGTTGGCACAAAGTGTAGATACCAAAGGAAGAACTCCACTTCACCTAGCCGCCAGTTTTTCTTCGGAGTGTAAGGAATTGGTTTGGTACCTTTTGTTGGTAACTACAGATGAGGAACCTGGTCATCCCTTCACTGGTCCCTGGGCCTCTAACCTCATGAATGTGCTAATTGCTTCTGGTTTCCATGATATTGCTCTATATCTCCTTCAACAATATCCTAACTTGGCCACTGCTACAGACCAAGAGGACTGCACTCCTTTATATGTCTTGGCAAAGAACCAATCAAACTTCCTTGGTGGCAGTAGGCTTGGATTTTGGGAAAGCTGCATTTACGCATTTATCCCTATTGACGTGGACTATAGACCACCAAAGTCGGTGAGAGCTTATGTAGGCAGTCACCATGAAAGCATCCAAAACCTTAACAGAATGCCATCACCAGTACAGAATGGAGCTCTATATTGGTTAAGAAGACTGCTTTGTGGAGCTCTTAAACAAATAGGTCACTACTTGAACCTCACCCTATGGTATTTACGACTACTCCTTGATGATTTCCCCTCATTTTACTTTACATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005886 GO:0006810 GO:0006887 GO:0006888 GO:0006996 GO:0007010 GO:0007163 GO:0008092 GO:0008093 GO:0008104 GO:0008150 GO:0009987 GO:0014731 GO:0016020 GO:0016043 GO:0016192 GO:0016323 GO:0019899 GO:0030011 GO:0030016 GO:0030017 GO:0030507 GO:0030674 GO:0031430 GO:0031672 GO:0032940 GO:0033036 GO:0034613 GO:0035088 GO:0035090 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043292 GO:0044422 GO:0044424 GO:0044425 GO:0044444 GO:0044449 GO:0044459 GO:0044464 GO:0045197 GO:0045199 GO:0046903 GO:0046907 GO:0048193 GO:0051117 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060090 GO:0061245 GO:0070727 GO:0071840 GO:0071944 GO:0072657 GO:0072659 GO:0098590 GO:0099080 GO:0099081 GO:0099512 GO:1990778

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 PGG

Protein Analysis

342

Amino Acids

38.36

Weight (kDa)

5.95

Isoelectric Point (pI)

50.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	123 - 183	3.2e-10	Ankyrin repeats (3 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002012)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06040
fragaria_vesca	FvH4_1g08600 FvH4_1g08600 FvH4_1g08610 FvH4_1g08610
malus_domestica	MD02G1090200.v1.1 MD02G1090300.v1.1 MD02G1090400.v1.1 MD15G1216800.v1.1 MD15G1217000.v1.1
prunus_persica	Prupe.7G199500_v2.0.a1 Prupe.7G199600_v2.0.a1 Prupe.7G199800_v2.0.a1 Prupe.7G199800_v2.0.a1
pyrus_communis	pycom02g07210 pycom02g07220 pycom02g07230 pycom15g19230 pycom15g19240
rosa_chinensis	RchiOBHm_Chr2g0093971 RchiOBHm_Chr2g0094821 RchiOBHm_Chr2g0094831 RchiOBHm_Chr5g0043671
rosa_laevigata	RLG00000016524
rosa_multiflora	Rmu_sc0003027.1_g000001 Rmu_sc0006422.1_g000027 Rmu_sc0018486.1_g000002
rosa_roxburghii	Rroxscaffold_1G00075090 Rroxscaffold_2G00146830 Rroxscaffold_2G00146840
rosa_rugosa	Rorug02G0047100 Rorug02G0047100 Rorug02G0054500 Rorug02G0054600 Rorug02G0054700
rosa_samantha	Rh2AG094700 Rh2AG094800 Rh2BG095300 Rh2BG095400 Rh2CG097100 Rh2CG097200 Rh2CG097300 Rh2DG094100 Rh2DG094200 Rh7BG370500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	540
AccB1I	GGYRCC	1 cut(s)	540
AccII	CGCG	1 cut(s)	80
AciI	CCGC	2 cut(s)	296, 504
AclWI	GGATC	1 cut(s)	233
AcoI	YGGCCR	1 cut(s)	678
AcsI	RAATTY	2 cut(s)	268, 317
AcuI	CTGAAG	1 cut(s)	171
AdeI	CACNNNGTG	1 cut(s)	467
AfaI	GTAC	4 cut(s)	61, 185, 542, 894
AfiI	CCNNNNNNNGG	2 cut(s)	550, 587
AflIII	ACRYGT	1 cut(s)	289
AgeI	ACCGGT	1 cut(s)	92
AgsI	TTSAA	3 cut(s)	160, 662, 964
AjiI	CACGTC	1 cut(s)	805
AjnI	CCWGG	2 cut(s)	571, 593
AluBI	AGCT	4 cut(s)	777, 836, 905, 938
AluI	AGCT	4 cut(s)	777, 836, 905, 938
Alw21I	GWGCWC	2 cut(s)	907, 940
AlwI	GGATC	1 cut(s)	233
AoxI	GGCC	2 cut(s)	597, 678
ApeKI	GCWGC	5 cut(s)	68, 113, 191, 401, 777
ApoI	RAATTY	2 cut(s)	268, 317
AsiGI	ACCGGT	1 cut(s)	92
Asp718I	GGTACC	1 cut(s)	540
AspS9I	GGNCC	2 cut(s)	590, 597
AsuC2I	CCSGG	1 cut(s)	133
AsuHPI	GGTGA	5 cut(s)	488, 841, 842, 879, 961
AvaII	GGWCC	1 cut(s)	590
BaeI	ACNNNNGTAYC	2 cut(s)	167, 200
BalI	TGGCCA	1 cut(s)	680
BanI	GGYRCC	1 cut(s)	540
BanII	GRGCYC	2 cut(s)	907, 940
BbsI	GAAGAC	1 cut(s)	928
Bbv12I	GWGCWC	2 cut(s)	907, 940
BbvI	GCAGC	5 cut(s)	55, 125, 178, 388, 764
BccI	CCATC	1 cut(s)	892
BciT130I	CCWGG	2 cut(s)	573, 595
BcnI	CCSGG	1 cut(s)	133
BfaI	CTAG	3 cut(s)	57, 219, 500
BfmI	CTRYAG	6 cut(s)	111, 348, 405, 558, 687, 811
BglII	AGATCT	1 cut(s)	261
BisI	GCNGC	7 cut(s)	69, 114, 192, 297, 402, 504, 778
BlsI	GCNGC	7 cut(s)	70, 115, 193, 298, 403, 505, 779
BmcAI	AGTACT	1 cut(s)	61
Bme1390I	CCNGG	3 cut(s)	133, 573, 595
Bme18I	GGWCC	1 cut(s)	590
BmgBI	CACGTC	1 cut(s)	805
BmgT120I	GGNCC	2 cut(s)	590, 597
BmiI	GGNNCC	3 cut(s)	542, 570, 592
BmrFI	CCNGG	3 cut(s)	133, 573, 595
BmsI	GCATC	2 cut(s)	205, 870
BpiI	GAAGAC	1 cut(s)	928
Bpu10I	CCTNAGC	1 cut(s)	429
BpuEI	CTTGAG	2 cut(s)	425, 439
BpuMI	CCSGG	1 cut(s)	133
BsaJI	CCNNGG	4 cut(s)	199, 593, 594, 745
BsaWI	WCCGGW	1 cut(s)	92
BsaXI	ACNNNNNCTCC	2 cut(s)	975, 1005
Bsc4I	CCNNNNNNNGG	2 cut(s)	550, 587
Bse118I	RCCGGY	1 cut(s)	92
Bse1I	ACTGG	4 cut(s)	363, 507, 592, 890
Bse3DI	GCAATG	1 cut(s)	434
BseBI	CCWGG	2 cut(s)	573, 595
BseDI	CCNNGG	4 cut(s)	199, 593, 594, 745
BseGI	GGATG	3 cut(s)	46, 577, 861
BseLI	CCNNNNNNNGG	2 cut(s)	550, 587
BseMI	GCAATG	1 cut(s)	434
BseMII	CTCAG	1 cut(s)	100
BseNI	ACTGG	4 cut(s)	363, 507, 592, 890
BseXI	GCAGC	5 cut(s)	55, 125, 178, 388, 764
BsgI	GTGCAG	1 cut(s)	688
Bsh1236I	CGCG	1 cut(s)	80
BshFI	GGCC	2 cut(s)	599, 680
BshNI	GGYRCC	1 cut(s)	540
BshTI	ACCGGT	1 cut(s)	92
BsiHKAI	GWGCWC	2 cut(s)	907, 940
BsiSI	CCGG	2 cut(s)	93, 133
BslFI	GGGAC	1 cut(s)	576
BslI	CCNNNNNNNGG	2 cut(s)	550, 587
BsmFI	GGGAC	1 cut(s)	576
BsmI	GAATGC	2 cut(s)	194, 885
BsnI	GGCC	2 cut(s)	599, 680
Bsp1286I	GDGCHC	2 cut(s)	907, 940
Bsp143I	GATC	2 cut(s)	238, 261
BspACI	CCGC	2 cut(s)	296, 504
BspANI	GGCC	2 cut(s)	599, 680
BspCNI	CTCAG	1 cut(s)	99
BspFNI	CGCG	1 cut(s)	80
BspHI	TCATGA	1 cut(s)	609
BspLI	GGNNCC	3 cut(s)	542, 570, 592
BspMAI	CTGCAG	2 cut(s)	115, 352
BspPI	GGATC	1 cut(s)	233
BspT107I	GGYRCC	1 cut(s)	540
BsrDI	GCAATG	1 cut(s)	434
BsrFI	RCCGGY	1 cut(s)	92
BsrI	ACTGG	4 cut(s)	363, 507, 592, 890
BssAI	RCCGGY	1 cut(s)	92
BssECI	CCNNGG	4 cut(s)	199, 593, 594, 745
BssMI	GATC	2 cut(s)	238, 261
BssT1I	CCWWGG	1 cut(s)	745
Bst2UI	CCWGG	2 cut(s)	573, 595
Bst4CI	ACNGT	3 cut(s)	64, 183, 225
BstC8I	GCNNGC	1 cut(s)	348
BstDEI	CTNAG	2 cut(s)	86, 429
BstF5I	GGATG	3 cut(s)	46, 577, 861
BstFNI	CGCG	1 cut(s)	80
BstKTI	GATC	2 cut(s)	241, 264
BstMBI	GATC	2 cut(s)	238, 261
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 254
BstNI	CCWGG	2 cut(s)	573, 595
BstNSI	RCATGY	1 cut(s)	293
BstSCI	CCNGG	3 cut(s)	131, 571, 593
BstSFI	CTRYAG	6 cut(s)	111, 348, 405, 558, 687, 811
BstUI	CGCG	1 cut(s)	80
BstV1I	GCAGC	5 cut(s)	55, 125, 178, 388, 764
BstV2I	GAAGAC	1 cut(s)	928
BstX2I	RGATCY	1 cut(s)	261
BstYI	RGATCY	1 cut(s)	261
BsuRI	GGCC	2 cut(s)	599, 680
BtrI	CACGTC	1 cut(s)	805
BtsCI	GGATG	3 cut(s)	46, 577, 861
BtsI	GCAGTG	1 cut(s)	681
BtsIMutI	CAGTG	3 cut(s)	179, 585, 681
Cac8I	GCNNGC	1 cut(s)	348
CciI	TCATGA	1 cut(s)	609
Cfr10I	RCCGGY	1 cut(s)	92
Cfr13I	GGNCC	2 cut(s)	590, 597
CsiI	ACCWGGT	1 cut(s)	571
Csp6I	GTAC	4 cut(s)	60, 184, 541, 893
CspAI	ACCGGT	1 cut(s)	92
CviAII	CATG	8 cut(s)	137, 188, 236, 290, 368, 610, 638, 854
CviQI	GTAC	4 cut(s)	60, 184, 541, 893
DdeI	CTNAG	2 cut(s)	86, 429
DpnI	GATC	2 cut(s)	240, 263
DpnII	GATC	2 cut(s)	238, 261
DraIII	CACNNNGTG	1 cut(s)	467
EaeI	YGGCCR	1 cut(s)	678
Ecl136II	GAGCTC	2 cut(s)	905, 938
Eco130I	CCWWGG	1 cut(s)	745
Eco24I	GRGCYC	2 cut(s)	907, 940
Eco47I	GGWCC	1 cut(s)	590
Eco53kI	GAGCTC	2 cut(s)	905, 938
Eco57I	CTGAAG	1 cut(s)	171
EcoICRI	GAGCTC	2 cut(s)	905, 938
EcoRII	CCWGG	2 cut(s)	571, 593
EcoT14I	CCWWGG	1 cut(s)	745
EcoT38I	GRGCYC	2 cut(s)	907, 940
ErhI	CCWWGG	1 cut(s)	745
FaeI	CATG	8 cut(s)	140, 191, 239, 293, 371, 613, 641, 857
FaqI	GGGAC	1 cut(s)	576
FatI	CATG	8 cut(s)	136, 187, 235, 289, 367, 609, 637, 853
FauNDI	CATATG	1 cut(s)	342
Fnu4HI	GCNGC	7 cut(s)	69, 114, 192, 297, 402, 504, 778
FokI	GGATG	3 cut(s)	53, 564, 848
FriOI	GRGCYC	2 cut(s)	907, 940
Fsp4HI	GCNGC	7 cut(s)	69, 114, 192, 297, 402, 504, 778
FspBI	CTAG	3 cut(s)	57, 219, 500
GluI	GCNGC	7 cut(s)	69, 114, 192, 297, 402, 504, 778
HaeIII	GGCC	2 cut(s)	599, 680
HapII	CCGG	2 cut(s)	93, 133
Hin1II	CATG	8 cut(s)	140, 191, 239, 293, 371, 613, 641, 857
HincII	GTYRAC	1 cut(s)	129
HindII	GTYRAC	1 cut(s)	129
HpaII	CCGG	2 cut(s)	93, 133
HphI	GGTGA	5 cut(s)	488, 841, 842, 879, 961
Hpy166II	GTNNAC	3 cut(s)	129, 384, 808
Hpy188I	TCNGA	4 cut(s)	89, 200, 316, 520
Hpy188III	TCNNGA	2 cut(s)	11, 610
Hpy8I	GTNNAC	3 cut(s)	129, 384, 808
HpyAV	CCTTC	3 cut(s)	299, 592, 668
HpyCH4III	ACNGT	3 cut(s)	64, 183, 225
HpyCH4IV	ACGT	1 cut(s)	804
HpyCH4V	TGCA	7 cut(s)	113, 194, 248, 284, 350, 705, 780
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 254
HpyF3I	CTNAG	2 cut(s)	86, 429
HpySE526I	ACGT	1 cut(s)	804
Hsp92II	CATG	8 cut(s)	140, 191, 239, 293, 371, 613, 641, 857
KpnI	GGTACC	1 cut(s)	544
Kzo9I	GATC	2 cut(s)	238, 261
LmnI	GCTCC	3 cut(s)	232, 902, 935
Lsp1109I	GCAGC	5 cut(s)	55, 125, 178, 388, 764
LweI	GCATC	2 cut(s)	205, 870
MabI	ACCWGGT	1 cut(s)	571
MaeI	CTAG	3 cut(s)	57, 219, 500
MaeII	ACGT	1 cut(s)	804
MaeIII	GTNAC	4 cut(s)	308, 553, 848, 953
MalI	GATC	2 cut(s)	240, 263
MboI	GATC	2 cut(s)	238, 261
MboII	GAAGA	7 cut(s)	99, 164, 224, 340, 495, 507, 933
MfeI	CAATTG	1 cut(s)	205
MflI	RGATCY	1 cut(s)	261
MhlI	GDGCHC	2 cut(s)	907, 940
MlsI	TGGCCA	1 cut(s)	680
MluCI	AATT	6 cut(s)	29, 205, 268, 317, 530, 621
MluNI	TGGCCA	1 cut(s)	680
MmeI	TCCRAC	1 cut(s)	18
MnlI	CCTC	9 cut(s)	194, 401, 414, 559, 610, 617, 691, 977, 1018
Mox20I	TGGCCA	1 cut(s)	680
MscI	TGGCCA	1 cut(s)	680
MseI	TTAA	3 cut(s)	873, 917, 942
MslI	CAYNNNNRTG	1 cut(s)	614
Msp20I	TGGCCA	1 cut(s)	680
MspI	CCGG	2 cut(s)	93, 133
MspR9I	CCNGG	3 cut(s)	133, 573, 595
MunI	CAATTG	1 cut(s)	205
Mva1269I	GAATGC	2 cut(s)	194, 885
MvaI	CCWGG	2 cut(s)	573, 595
MvnI	CGCG	1 cut(s)	80
MwoI	GCNNNNNNNGC	2 cut(s)	77, 254
NciI	CCSGG	1 cut(s)	133
NdeI	CATATG	1 cut(s)	342
NdeII	GATC	2 cut(s)	238, 261
NlaIII	CATG	8 cut(s)	140, 191, 239, 293, 371, 613, 641, 857
NlaIV	GGNNCC	3 cut(s)	542, 570, 592
NmuCI	GTSAC	3 cut(s)	308, 848, 953
NspI	RCATGY	1 cut(s)	293
PagI	TCATGA	1 cut(s)	609
PasI	CCCWGGG	1 cut(s)	594
PciI	ACATGT	1 cut(s)	289
PctI	GAATGC	2 cut(s)	194, 885
PinAI	ACCGGT	1 cut(s)	92
PkrI	GCNGC	7 cut(s)	70, 115, 193, 298, 403, 505, 779
PscI	ACATGT	1 cut(s)	289
Psp124BI	GAGCTC	2 cut(s)	907, 940
Psp6I	CCWGG	2 cut(s)	571, 593
PspGI	CCWGG	2 cut(s)	571, 593
PspN4I	GGNNCC	3 cut(s)	542, 570, 592
PspPI	GGNCC	2 cut(s)	590, 597
PstI	CTGCAG	2 cut(s)	115, 352
PsuI	RGATCY	1 cut(s)	261
RsaI	GTAC	4 cut(s)	61, 185, 542, 894
RsaNI	GTAC	4 cut(s)	60, 184, 541, 893
RseI	CAYNNNNRTG	1 cut(s)	614
SacI	GAGCTC	2 cut(s)	907, 940
SaqAI	TTAA	3 cut(s)	873, 917, 942
SatI	GCNGC	7 cut(s)	69, 114, 192, 297, 402, 504, 778
Sau3AI	GATC	2 cut(s)	238, 261
Sau96I	GGNCC	2 cut(s)	590, 597
ScaI	AGTACT	1 cut(s)	61
ScrFI	CCNGG	3 cut(s)	133, 573, 595
SduI	GDGCHC	2 cut(s)	907, 940
SexAI	ACCWGGT	1 cut(s)	571
SfaNI	GCATC	2 cut(s)	205, 870
SfcI	CTRYAG	6 cut(s)	111, 348, 405, 558, 687, 811
SinI	GGWCC	1 cut(s)	590
SmiMI	CAYNNNNRTG	1 cut(s)	614
SmlI	CTYRAG	2 cut(s)	418, 440
SmoI	CTYRAG	2 cut(s)	418, 440
Sse9I	AATT	6 cut(s)	29, 205, 268, 317, 530, 621
SsiI	CCGC	2 cut(s)	296, 504
SspMI	CTAG	3 cut(s)	57, 219, 500
SstI	GAGCTC	2 cut(s)	907, 940
StyD4I	CCNGG	3 cut(s)	131, 571, 593
StyI	CCWWGG	1 cut(s)	745
TaaI	ACNGT	3 cut(s)	64, 183, 225
TaiI	ACGT	1 cut(s)	807
TasI	AATT	6 cut(s)	29, 205, 268, 317, 530, 621
TatI	WGTACW	2 cut(s)	59, 892
TauI	GCSGC	2 cut(s)	299, 506
Tru1I	TTAA	3 cut(s)	873, 917, 942
Tru9I	TTAA	3 cut(s)	873, 917, 942
TscAI	CASTG	3 cut(s)	186, 592, 688
TseFI	GTSAC	3 cut(s)	308, 848, 953
TseI	GCWGC	5 cut(s)	68, 113, 191, 401, 777
Tsp45I	GTSAC	3 cut(s)	308, 848, 953
TspDTI	ATGAA	5 cut(s)	153, 369, 387, 626, 870
TspRI	CASTG	3 cut(s)	186, 592, 688
VpaK11BI	GGWCC	1 cut(s)	590
XapI	RAATTY	2 cut(s)	268, 317
XceI	RCATGY	1 cut(s)	293
XspI	CTAG	3 cut(s)	57, 219, 500
ZrmI	AGTACT	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.