Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018486.1

Orthogroup ID

OG0002012

Physical Location & Seq

Genomic Coordinates Reverse (-)

9066 .. 10957

Gene Structure 1892 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018486.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

atggctgggcagacccagcatcactcaaccgagatcgctttgttgctcttcaagctcgctgcttctggtgcttgtaatcaaatcctgtacatagccactcttaatgggataactgaaatcattagtacactccttgggttcttccctgatctaatatgggctcagctcagcaacaacctgtatttcttagttccttttgctattgagcttcgacatgaaaatattttccgtcttgtgtgtgaccacactgcacgcagtaaaataatggcatctacattactagaatctggcaccatcttgcatctggcagcaaagttggcacctccggcccaacttacatccagtaagaatggacatgaaaagactgctaaagaactattaaacttggccgagaaaggggagaagtggctgaatgatacttcgaatgtatgcatggttgttgcaactctaattgctacggtggtttttgctgctgcttttacagttcctggtgaagatttcattgactcactgccaaagaggttgatcataggtttggcttctctattctgtgctatagctgccacaatggtggccttcggtgcaaccatttcgattgtgctcagcaagaggttcagttgggtttctattccgatcaccgtgcttgcctcttttccggtgactctatttgctctgctgcagcttcccttgtttattcaaaaaggagttgaacaaagaaaagatttgcccttctgttatgttgtggtttcattaattatgagtaattttgtgcagcgtttaaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005886 GO:0006810 GO:0006887 GO:0006888 GO:0006996 GO:0007010 GO:0007163 GO:0008092 GO:0008093 GO:0008104 GO:0008150 GO:0009987 GO:0014731 GO:0016020 GO:0016043 GO:0016192 GO:0016323 GO:0019899 GO:0030011 GO:0030016 GO:0030017 GO:0030507 GO:0030674 GO:0031430 GO:0031672 GO:0032940 GO:0033036 GO:0034613 GO:0035088 GO:0035090 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043292 GO:0044422 GO:0044424 GO:0044425 GO:0044444 GO:0044449 GO:0044459 GO:0044464 GO:0045197 GO:0045199 GO:0046903 GO:0046907 GO:0048193 GO:0051117 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060090 GO:0061245 GO:0070727 GO:0071840 GO:0071944 GO:0072657 GO:0072659 GO:0098590 GO:0099080 GO:0099081 GO:0099512 GO:1990778

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 PGG

Protein Analysis

261

Amino Acids

28.53

Weight (kDa)

8.28

Isoelectric Point (pI)

35.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002012)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06040
fragaria_vesca	FvH4_1g08600 FvH4_1g08600 FvH4_1g08610 FvH4_1g08610
malus_domestica	MD02G1090200.v1.1 MD02G1090300.v1.1 MD02G1090400.v1.1 MD15G1216800.v1.1 MD15G1217000.v1.1
prunus_persica	Prupe.7G199500_v2.0.a1 Prupe.7G199600_v2.0.a1 Prupe.7G199800_v2.0.a1 Prupe.7G199800_v2.0.a1
pyrus_communis	pycom02g07210 pycom02g07220 pycom02g07230 pycom15g19230 pycom15g19240
rosa_chinensis	RchiOBHm_Chr2g0093971 RchiOBHm_Chr2g0094821 RchiOBHm_Chr2g0094831 RchiOBHm_Chr5g0043671
rosa_laevigata	RLG00000016524
rosa_multiflora	Rmu_sc0003027.1_g000001 Rmu_sc0006422.1_g000027 Rmu_sc0018486.1_g000002
rosa_roxburghii	Rroxscaffold_1G00075090 Rroxscaffold_2G00146830 Rroxscaffold_2G00146840
rosa_rugosa	Rorug02G0047100 Rorug02G0047100 Rorug02G0054500 Rorug02G0054600 Rorug02G0054700
rosa_samantha	Rh2AG094700 Rh2AG094800 Rh2BG095300 Rh2BG095400 Rh2CG097100 Rh2CG097200 Rh2CG097300 Rh2DG094100 Rh2DG094200 Rh7BG370500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	290, 319
AcoI	YGGCCR	1 cut(s)	387
AfaI	GTAC	2 cut(s)	89, 127
AfiI	CCNNNNNNNGG	1 cut(s)	396
AgsI	TTSAA	3 cut(s)	52, 698, 710
AjnI	CCWGG	1 cut(s)	487
AleI	CACNNNNGTG	1 cut(s)	569
AluBI	AGCT	5 cut(s)	55, 166, 208, 560, 682
AluI	AGCT	5 cut(s)	55, 166, 208, 560, 682
Alw21I	GWGCWC	1 cut(s)	603
AlwNI	CAGNNNCTG	1 cut(s)	488
AoxI	GGCC	3 cut(s)	327, 387, 573
ApeKI	GCWGC	8 cut(s)	59, 308, 470, 473, 560, 676, 679, 772
AseI	ATTAAT	1 cut(s)	752
AspS9I	GGNCC	1 cut(s)	328
AsuHPI	GGTGA	3 cut(s)	503, 628, 670
AsuII	TTCGAA	1 cut(s)	422
BanI	GGYRCC	2 cut(s)	290, 319
BanII	GRGCYC	1 cut(s)	163
Bbv12I	GWGCWC	1 cut(s)	603
BbvI	GCAGC	7 cut(s)	46, 320, 457, 460, 547, 663, 691
BccI	CCATC	1 cut(s)	302
BcgI	CGANNNNNNTGC	4 cut(s)	573, 607, 622, 656
BciT130I	CCWGG	1 cut(s)	489
BclI	TGATCA	1 cut(s)	525
BfaI	CTAG	1 cut(s)	281
BfmI	CTRYAG	2 cut(s)	555, 677
BisI	GCNGC	8 cut(s)	60, 309, 471, 474, 561, 677, 680, 773
BlpI	GCTNAGC	3 cut(s)	162, 167, 602
BlsI	GCNGC	8 cut(s)	61, 310, 472, 475, 562, 678, 681, 774
Bme1390I	CCNGG	1 cut(s)	489
BmgT120I	GGNCC	1 cut(s)	328
BmiI	GGNNCC	2 cut(s)	292, 321
BmrFI	CCNGG	1 cut(s)	489
BmsI	GCATC	3 cut(s)	28, 278, 310
Bpu1102I	GCTNAGC	3 cut(s)	162, 167, 602
Bpu14I	TTCGAA	1 cut(s)	422
BsaJI	CCNNGG	1 cut(s)	133
BsaWI	WCCGGW	1 cut(s)	655
Bsc4I	CCNNNNNNNGG	1 cut(s)	396
Bse1I	ACTGG	1 cut(s)	342
BseBI	CCWGG	1 cut(s)	489
BseDI	CCNNGG	1 cut(s)	133
BseGI	GGATG	1 cut(s)	338
BseLI	CCNNNNNNNGG	1 cut(s)	396
BseMII	CTCAG	3 cut(s)	176, 181, 616
BseNI	ACTGG	1 cut(s)	342
BseXI	GCAGC	7 cut(s)	46, 320, 457, 460, 547, 663, 691
BseYI	CCCAGC	2 cut(s)	5, 15
BsgI	GTGCAG	1 cut(s)	234
BshFI	GGCC	3 cut(s)	329, 389, 575
BshNI	GGYRCC	2 cut(s)	290, 319
BsiHKAI	GWGCWC	1 cut(s)	603
BsiSI	CCGG	2 cut(s)	326, 656
BslI	CCNNNNNNNGG	1 cut(s)	396
BsnI	GGCC	3 cut(s)	329, 389, 575
Bsp119I	TTCGAA	1 cut(s)	422
Bsp1286I	GDGCHC	2 cut(s)	163, 603
Bsp1407I	TGTACA	1 cut(s)	87
Bsp143I	GATC	4 cut(s)	33, 148, 525, 633
Bsp1720I	GCTNAGC	3 cut(s)	162, 167, 602
BspANI	GGCC	3 cut(s)	329, 389, 575
BspCNI	CTCAG	3 cut(s)	175, 180, 615
BspLI	GGNNCC	2 cut(s)	292, 321
BspMAI	CTGCAG	1 cut(s)	681
BspQI	GCTCTTC	1 cut(s)	53
BspT104I	TTCGAA	1 cut(s)	422
BspT107I	GGYRCC	2 cut(s)	290, 319
BsrGI	TGTACA	1 cut(s)	87
BsrI	ACTGG	1 cut(s)	342
BssECI	CCNNGG	1 cut(s)	133
BssMI	GATC	4 cut(s)	33, 148, 525, 633
BssT1I	CCWWGG	1 cut(s)	133
Bst2UI	CCWGG	1 cut(s)	489
Bst4CI	ACNGT	3 cut(s)	460, 484, 640
Bst6I	CTCTTC	1 cut(s)	53
BstAUI	TGTACA	1 cut(s)	87
BstBI	TTCGAA	1 cut(s)	422
BstC8I	GCNNGC	3 cut(s)	57, 253, 645
BstDEI	CTNAG	4 cut(s)	162, 167, 187, 602
BstF5I	GGATG	1 cut(s)	338
BstKTI	GATC	4 cut(s)	36, 151, 528, 636
BstMBI	GATC	4 cut(s)	33, 148, 525, 633
BstMWI	GCNNNNNNNGC	7 cut(s)	16, 52, 68, 317, 326, 560, 581
BstNI	CCWGG	1 cut(s)	489
BstSCI	CCNGG	1 cut(s)	487
BstSFI	CTRYAG	2 cut(s)	555, 677
BstV1I	GCAGC	7 cut(s)	46, 320, 457, 460, 547, 663, 691
BstXI	CCANNNNNNTGG	1 cut(s)	571
BsuRI	GGCC	3 cut(s)	329, 389, 575
BtsCI	GGATG	1 cut(s)	338
BtsI	GCAGTG	2 cut(s)	246, 509
BtsIMutI	CAGTG	2 cut(s)	246, 509
Cac8I	GCNNGC	3 cut(s)	57, 253, 645
CaiI	CAGNNNCTG	1 cut(s)	488
Cfr13I	GGNCC	1 cut(s)	328
Csp6I	GTAC	2 cut(s)	88, 126
CviAII	CATG	3 cut(s)	215, 356, 433
CviQI	GTAC	2 cut(s)	88, 126
DdeI	CTNAG	4 cut(s)	162, 167, 187, 602
DpnI	GATC	4 cut(s)	35, 150, 527, 635
DpnII	GATC	4 cut(s)	33, 148, 525, 633
DraI	TTTAAA	1 cut(s)	780
EaeI	YGGCCR	1 cut(s)	387
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
Eco130I	CCWWGG	1 cut(s)	133
Eco24I	GRGCYC	1 cut(s)	163
EcoRII	CCWGG	1 cut(s)	487
EcoT14I	CCWWGG	1 cut(s)	133
EcoT22I	ATGCAT	1 cut(s)	434
EcoT38I	GRGCYC	1 cut(s)	163
ErhI	CCWWGG	1 cut(s)	133
FaeI	CATG	3 cut(s)	218, 359, 436
FatI	CATG	3 cut(s)	214, 355, 432
FbaI	TGATCA	1 cut(s)	525
Fnu4HI	GCNGC	8 cut(s)	60, 309, 471, 474, 561, 677, 680, 773
FokI	GGATG	1 cut(s)	325
FriOI	GRGCYC	1 cut(s)	163
Fsp4HI	GCNGC	8 cut(s)	60, 309, 471, 474, 561, 677, 680, 773
FspBI	CTAG	1 cut(s)	281
GluI	GCNGC	8 cut(s)	60, 309, 471, 474, 561, 677, 680, 773
GsaI	CCCAGC	2 cut(s)	9, 19
HaeIII	GGCC	3 cut(s)	329, 389, 575
HapII	CCGG	2 cut(s)	326, 656
Hin1II	CATG	3 cut(s)	218, 359, 436
HinfI	GANTC	3 cut(s)	284, 506, 661
HpaII	CCGG	2 cut(s)	326, 656
HphI	GGTGA	3 cut(s)	503, 628, 670
Hpy166II	GTNNAC	1 cut(s)	128
Hpy188I	TCNGA	1 cut(s)	633
Hpy8I	GTNNAC	1 cut(s)	128
HpyAV	CCTTC	2 cut(s)	586, 739
HpyCH4III	ACNGT	3 cut(s)	460, 484, 640
HpyCH4V	TGCA	7 cut(s)	251, 301, 432, 443, 584, 679, 772
HpyF10VI	GCNNNNNNNGC	7 cut(s)	16, 52, 68, 317, 326, 560, 581
HpyF3I	CTNAG	4 cut(s)	162, 167, 187, 602
Hsp92II	CATG	3 cut(s)	218, 359, 436
Ksp22I	TGATCA	1 cut(s)	525
Kzo9I	GATC	4 cut(s)	33, 148, 525, 633
LguI	GCTCTTC	1 cut(s)	53
Lsp1109I	GCAGC	7 cut(s)	46, 320, 457, 460, 547, 663, 691
LweI	GCATC	3 cut(s)	28, 278, 310
MaeI	CTAG	1 cut(s)	281
MaeIII	GTNAC	2 cut(s)	239, 658
MalI	GATC	4 cut(s)	35, 150, 527, 635
MboI	GATC	4 cut(s)	33, 148, 525, 633
MboII	GAAGA	3 cut(s)	40, 133, 506
MhlI	GDGCHC	2 cut(s)	163, 603
MluCI	AATT	4 cut(s)	450, 753, 763, 781
MlyI	GAGTC	2 cut(s)	500, 655
MnlI	CCTC	4 cut(s)	333, 513, 603, 658
Mph1103I	ATGCAT	1 cut(s)	434
MseI	TTAA	4 cut(s)	102, 380, 752, 779
MslI	CAYNNNNRTG	1 cut(s)	569
MspI	CCGG	2 cut(s)	326, 656
MspR9I	CCNGG	1 cut(s)	489
MvaI	CCWGG	1 cut(s)	489
MwoI	GCNNNNNNNGC	7 cut(s)	16, 52, 68, 317, 326, 560, 581
NdeII	GATC	4 cut(s)	33, 148, 525, 633
NlaIII	CATG	3 cut(s)	218, 359, 436
NlaIV	GGNNCC	2 cut(s)	292, 321
NmeAIII	GCCGAG	1 cut(s)	415
NmuCI	GTSAC	2 cut(s)	239, 658
NsiI	ATGCAT	1 cut(s)	434
NspV	TTCGAA	1 cut(s)	422
OliI	CACNNNNGTG	1 cut(s)	569
PciSI	GCTCTTC	1 cut(s)	53
PfeI	GAWTC	1 cut(s)	284
PkrI	GCNGC	8 cut(s)	61, 310, 472, 475, 562, 678, 681, 774
PleI	GAGTC	2 cut(s)	500, 655
PpsI	GAGTC	2 cut(s)	500, 655
PshBI	ATTAAT	1 cut(s)	752
Psp6I	CCWGG	1 cut(s)	487
PspFI	CCCAGC	2 cut(s)	5, 15
PspGI	CCWGG	1 cut(s)	487
PspN4I	GGNNCC	2 cut(s)	292, 321
PspPI	GGNCC	1 cut(s)	328
PstI	CTGCAG	1 cut(s)	681
PstNI	CAGNNNCTG	1 cut(s)	488
RsaI	GTAC	2 cut(s)	89, 127
RsaNI	GTAC	2 cut(s)	88, 126
RseI	CAYNNNNRTG	1 cut(s)	569
SapI	GCTCTTC	1 cut(s)	53
SaqAI	TTAA	4 cut(s)	102, 380, 752, 779
SatI	GCNGC	8 cut(s)	60, 309, 471, 474, 561, 677, 680, 773
Sau3AI	GATC	4 cut(s)	33, 148, 525, 633
Sau96I	GGNCC	1 cut(s)	328
SchI	GAGTC	2 cut(s)	500, 655
ScrFI	CCNGG	1 cut(s)	489
SduI	GDGCHC	2 cut(s)	163, 603
SfaNI	GCATC	3 cut(s)	28, 278, 310
SfcI	CTRYAG	2 cut(s)	555, 677
SfuI	TTCGAA	1 cut(s)	422
SmiMI	CAYNNNNRTG	1 cut(s)	569
Sse9I	AATT	4 cut(s)	450, 753, 763, 781
SspI	AATATT	1 cut(s)	223
SspMI	CTAG	1 cut(s)	281
StyD4I	CCNGG	1 cut(s)	487
StyI	CCWWGG	1 cut(s)	133
TaaI	ACNGT	3 cut(s)	460, 484, 640
TaqI	TCGA	3 cut(s)	211, 422, 593
TasI	AATT	4 cut(s)	450, 753, 763, 781
TatI	WGTACW	2 cut(s)	87, 125
TfiI	GAWTC	1 cut(s)	284
Tru1I	TTAA	4 cut(s)	102, 380, 752, 779
Tru9I	TTAA	4 cut(s)	102, 380, 752, 779
TscAI	CASTG	2 cut(s)	253, 516
TseFI	GTSAC	2 cut(s)	239, 658
TseI	GCWGC	8 cut(s)	59, 308, 470, 473, 560, 676, 679, 772
Tsp45I	GTSAC	2 cut(s)	239, 658
TspDTI	ATGAA	4 cut(s)	231, 372, 490, 738
TspGWI	ACGGA	1 cut(s)	218
TspRI	CASTG	2 cut(s)	253, 516
VspI	ATTAAT	1 cut(s)	752
XcmI	CCANNNNNNNNNTGG	1 cut(s)	301
XspI	CTAG	1 cut(s)	281
Zsp2I	ATGCAT	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.