Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002012

Physical Location & Seq

Genomic Coordinates Reverse (-)

38710369 .. 38712155

Gene Structure 1787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32193

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGGTTCTGTTATTGATGATTGTGAATTCCTTTTCACACCAAAAATTGGACCCCCAGAGGAAGGTGAAATATTGTACTGTGAGTGAAAGGCCAACAACCAATGGTGCAGTAGTGAAAGGCCAAACACTGAAGTTGAAACGAAGATCCCCGGAGCATCAAGTTTATGAAAAGTTGAGGGCTGAGTGGCTGACCTTGATTTTTCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

68

Amino Acids

8.01

Weight (kDa)

10.29

Isoelectric Point (pI)

33.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002012)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06040
fragaria_vesca	FvH4_1g08600 FvH4_1g08600 FvH4_1g08610 FvH4_1g08610
malus_domestica	MD02G1090200.v1.1 MD02G1090300.v1.1 MD02G1090400.v1.1 MD15G1216800.v1.1 MD15G1217000.v1.1
prunus_persica	Prupe.7G199500_v2.0.a1 Prupe.7G199600_v2.0.a1 Prupe.7G199800_v2.0.a1 Prupe.7G199800_v2.0.a1
pyrus_communis	pycom02g07210 pycom02g07220 pycom02g07230 pycom15g19230 pycom15g19240
rosa_chinensis	RchiOBHm_Chr2g0093971 RchiOBHm_Chr2g0094821 RchiOBHm_Chr2g0094831 RchiOBHm_Chr5g0043671
rosa_laevigata	RLG00000016524
rosa_multiflora	Rmu_sc0003027.1_g000001 Rmu_sc0006422.1_g000027 Rmu_sc0018486.1_g000002
rosa_roxburghii	Rroxscaffold_1G00075090 Rroxscaffold_2G00146830 Rroxscaffold_2G00146840
rosa_rugosa	Rorug02G0047100 Rorug02G0047100 Rorug02G0054500 Rorug02G0054600 Rorug02G0054700
rosa_samantha	Rh2AG094700 Rh2AG094800 Rh2BG095300 Rh2BG095400 Rh2CG097100 Rh2CG097200 Rh2CG097300 Rh2DG094100 Rh2DG094200 Rh7BG370500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	46
AclWI	GGATC	1 cut(s)	138
AcsI	RAATTY	1 cut(s)	25
AcuI	CTGAAG	1 cut(s)	149
AfaI	GTAC	1 cut(s)	76
AfiI	CCNNNNNNNGG	2 cut(s)	46, 61
AgsI	TTSAA	1 cut(s)	136
AlwI	GGATC	1 cut(s)	138
AoxI	GGCC	2 cut(s)	89, 118
ApoI	RAATTY	1 cut(s)	25
AspS9I	GGNCC	1 cut(s)	49
AsuC2I	CCSGG	1 cut(s)	149
AsuHPI	GGTGA	1 cut(s)	76
AvaII	GGWCC	1 cut(s)	49
BcnI	CCSGG	1 cut(s)	149
Bme1390I	CCNGG	1 cut(s)	149
Bme18I	GGWCC	1 cut(s)	49
BmgT120I	GGNCC	1 cut(s)	49
BmiI	GGNNCC	1 cut(s)	51
BmrFI	CCNGG	1 cut(s)	149
BmsI	GCATC	1 cut(s)	163
BpuMI	CCSGG	1 cut(s)	149
BsaJI	CCNNGG	1 cut(s)	147
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 61
BseDI	CCNNGG	1 cut(s)	147
BseLI	CCNNNNNNNGG	2 cut(s)	46, 61
BseMII	CTCAG	1 cut(s)	171
BsgI	GTGCAG	1 cut(s)	126
BshFI	GGCC	2 cut(s)	91, 120
BsiSI	CCGG	1 cut(s)	149
BslI	CCNNNNNNNGG	2 cut(s)	46, 61
BsnI	GGCC	2 cut(s)	91, 120
Bsp143I	GATC	1 cut(s)	143
BspANI	GGCC	2 cut(s)	91, 120
BspCNI	CTCAG	1 cut(s)	172
BspLI	GGNNCC	1 cut(s)	51
BspPI	GGATC	1 cut(s)	138
BssECI	CCNNGG	1 cut(s)	147
BssMI	GATC	1 cut(s)	143
Bst4CI	ACNGT	1 cut(s)	79
BstDEI	CTNAG	1 cut(s)	180
BstKTI	GATC	1 cut(s)	146
BstMBI	GATC	1 cut(s)	143
BstSCI	CCNGG	1 cut(s)	147
BstX2I	RGATCY	1 cut(s)	143
BstYI	RGATCY	1 cut(s)	143
BsuRI	GGCC	2 cut(s)	91, 120
BtsIMutI	CAGTG	1 cut(s)	125
Cfr13I	GGNCC	1 cut(s)	49
Csp6I	GTAC	1 cut(s)	75
CviJI	RGCY	4 cut(s)	91, 120, 179, 187
CviKI_1	RGCY	4 cut(s)	91, 120, 179, 187
CviQI	GTAC	1 cut(s)	75
DdeI	CTNAG	1 cut(s)	180
DpnI	GATC	1 cut(s)	145
DpnII	GATC	1 cut(s)	143
Eco47I	GGWCC	1 cut(s)	49
Eco57I	CTGAAG	1 cut(s)	149
EcoRI	GAATTC	1 cut(s)	25
FaiI	YATR	1 cut(s)	165
HaeIII	GGCC	2 cut(s)	91, 120
HapII	CCGG	1 cut(s)	149
HpaII	CCGG	1 cut(s)	149
HphI	GGTGA	1 cut(s)	76
HpyAV	CCTTC	1 cut(s)	55
HpyCH4III	ACNGT	1 cut(s)	79
HpyCH4V	TGCA	1 cut(s)	107
HpyF3I	CTNAG	1 cut(s)	180
Kzo9I	GATC	1 cut(s)	143
LmnI	GCTCC	1 cut(s)	151
LpnPI	CCDG	2 cut(s)	68, 162
LweI	GCATC	1 cut(s)	163
MalI	GATC	1 cut(s)	145
MboI	GATC	1 cut(s)	143
MboII	GAAGA	1 cut(s)	153
MflI	RGATCY	1 cut(s)	143
MluCI	AATT	2 cut(s)	25, 44
MnlI	CCTC	2 cut(s)	51, 168
MspI	CCGG	1 cut(s)	149
MspR9I	CCNGG	1 cut(s)	149
NciI	CCSGG	1 cut(s)	149
NdeII	GATC	1 cut(s)	143
NlaIV	GGNNCC	1 cut(s)	51
PflMI	CCANNNNNTGG	1 cut(s)	46
PspN4I	GGNNCC	1 cut(s)	51
PspPI	GGNCC	1 cut(s)	49
PsuI	RGATCY	1 cut(s)	143
RsaI	GTAC	1 cut(s)	76
RsaNI	GTAC	1 cut(s)	75
Sau3AI	GATC	1 cut(s)	143
Sau96I	GGNCC	1 cut(s)	49
ScrFI	CCNGG	1 cut(s)	149
SetI	ASST	2 cut(s)	66, 194
SfaNI	GCATC	1 cut(s)	163
SgeI	CNNG	4 cut(s)	67, 160, 161, 170
SinI	GGWCC	1 cut(s)	49
Sse9I	AATT	2 cut(s)	25, 44
SspI	AATATT	1 cut(s)	71
StyD4I	CCNGG	1 cut(s)	147
TaaI	ACNGT	1 cut(s)	79
TasI	AATT	2 cut(s)	25, 44
TatI	WGTACW	1 cut(s)	74
TscAI	CASTG	1 cut(s)	132
TspDTI	ATGAA	1 cut(s)	180
TspRI	CASTG	1 cut(s)	132
Van91I	CCANNNNNTGG	1 cut(s)	46
VpaK11BI	GGWCC	1 cut(s)	49
XapI	RAATTY	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.