Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002012

Physical Location & Seq

Genomic Coordinates Forward (+)

7401231 .. 7404290

Gene Structure 3060 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG094200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGCACTTCCAGACAGGGAAATCACACAATTAGCGTTGGATGTTGAGCAAAGTCCTAGTACTGTTGCTGCTCGTACCGTGTATCTCAGAACCGGTGGAAACCAATCTTCTGCAACAAGAACTATGTCAACCCGGCATGAAAGTTCTGCTGAAGATTTGAACTTGGATTACTACCTACCACTGTACCATGCTGCATTCCGAGGCAATTGGGAAGATGCTAGACGGTTTTTGGAGCATGATCCTAATGCAGTCAAAGCCAAGATCTCAAATTTGTCAATGACTGCATTACATGTTGCGGCTTGTGAAGGTCACTCGGAATTTGTGGAGAAGATAGTGAAACATATGCCCGCAGATGAACTGGCAGAGCATGATGAAATGGGGTTCACAGCCCTCCACTATGCTGCTATAGGTGGAAACTTGAGGTCTGCTAAGGCATTGCTCAAGGAAAATCCCAAGTTGGCACAAAGTGTAGATACCAAAGGAAGAACTCCACTTCACCTAGCCGCCAGTTTTTCTTCGGAGTGTAAGGAATTGGTTTGGTACCTTTTGTTGGTAACTACAGATGAGGAACCTGGTCATCCCTTCACTGGTCCCTGGGCCTCTAACCTTATGAATGTGTTAATTGCTTCTGGTTTCCATGATATTGCTCTATATCTCCTTCAACAATATCCTAACTTGGCCACTGCTACAGACCAAGAGGACTGCACTCCTTTATATGTCTTGGCAAAGAACCAATCAAACTTCCTTGGTGGCAGTAGGCTTGGATTTTGGGAAAGCTGCATTTACCCATTTATCCCTATTGACGTGGACTATAGACCACCAAACTCGGTGAGAGCTTATGTAGGCAGTCACCATGAAAGCATCCAAAACCTTAACAGAATGCCATCACCAGTACAGAATGGAGGTCAGAGTTCGATATTACAGATAAATTTACCTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005886 GO:0006810 GO:0006887 GO:0006888 GO:0006996 GO:0007010 GO:0007163 GO:0008092 GO:0008093 GO:0008104 GO:0008150 GO:0009987 GO:0014731 GO:0016020 GO:0016043 GO:0016192 GO:0016323 GO:0019899 GO:0030011 GO:0030016 GO:0030017 GO:0030507 GO:0030674 GO:0031430 GO:0031672 GO:0032940 GO:0033036 GO:0034613 GO:0035088 GO:0035090 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043292 GO:0044422 GO:0044424 GO:0044425 GO:0044444 GO:0044449 GO:0044459 GO:0044464 GO:0045197 GO:0045199 GO:0046903 GO:0046907 GO:0048193 GO:0051117 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060090 GO:0061245 GO:0070727 GO:0071840 GO:0071944 GO:0072657 GO:0072659 GO:0098590 GO:0099080 GO:0099081 GO:0099512 GO:1990778

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 PGG

Protein Analysis

313

Amino Acids

34.68

Weight (kDa)

5.59

Isoelectric Point (pI)

51.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	54 - 114	6.1e-06	Ankyrin repeats (3 copies)
Ank_2	PF12796	123 - 183	3.8e-10	Ankyrin repeats (3 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002012)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06040
fragaria_vesca	FvH4_1g08600 FvH4_1g08600 FvH4_1g08610 FvH4_1g08610
malus_domestica	MD02G1090200.v1.1 MD02G1090300.v1.1 MD02G1090400.v1.1 MD15G1216800.v1.1 MD15G1217000.v1.1
prunus_persica	Prupe.7G199500_v2.0.a1 Prupe.7G199600_v2.0.a1 Prupe.7G199800_v2.0.a1 Prupe.7G199800_v2.0.a1
pyrus_communis	pycom02g07210 pycom02g07220 pycom02g07230 pycom15g19230 pycom15g19240
rosa_chinensis	RchiOBHm_Chr2g0093971 RchiOBHm_Chr2g0094821 RchiOBHm_Chr2g0094831 RchiOBHm_Chr5g0043671
rosa_laevigata	RLG00000016524
rosa_multiflora	Rmu_sc0003027.1_g000001 Rmu_sc0006422.1_g000027 Rmu_sc0018486.1_g000002
rosa_roxburghii	Rroxscaffold_1G00075090 Rroxscaffold_2G00146830 Rroxscaffold_2G00146840
rosa_rugosa	Rorug02G0047100 Rorug02G0047100 Rorug02G0054500 Rorug02G0054600 Rorug02G0054700
rosa_samantha	Rh2AG094700 Rh2AG094800 Rh2BG095300 Rh2BG095400 Rh2CG097100 Rh2CG097200 Rh2CG097300 Rh2DG094100 Rh2DG094200 Rh7BG370500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	540
AccB1I	GGYRCC	1 cut(s)	540
AciI	CCGC	3 cut(s)	296, 348, 504
AclWI	GGATC	1 cut(s)	233
AcoI	YGGCCR	1 cut(s)	678
AcsI	RAATTY	3 cut(s)	268, 317, 928
AcuI	CTGAAG	1 cut(s)	171
AdeI	CACNNNGTG	1 cut(s)	467
AfaI	GTAC	5 cut(s)	61, 76, 185, 542, 894
AfiI	CCNNNNNNNGG	2 cut(s)	550, 587
AflIII	ACRYGT	1 cut(s)	289
AgeI	ACCGGT	1 cut(s)	92
AgsI	TTSAA	2 cut(s)	160, 662
AjiI	CACGTC	1 cut(s)	805
AjnI	CCWGG	2 cut(s)	571, 593
AluBI	AGCT	2 cut(s)	777, 836
AluI	AGCT	2 cut(s)	777, 836
AlwI	GGATC	1 cut(s)	233
AoxI	GGCC	2 cut(s)	597, 678
ApeKI	GCWGC	4 cut(s)	68, 191, 401, 777
ApoI	RAATTY	3 cut(s)	268, 317, 928
AsiGI	ACCGGT	1 cut(s)	92
Asp718I	GGTACC	1 cut(s)	540
AspS9I	GGNCC	2 cut(s)	590, 597
AsuC2I	CCSGG	1 cut(s)	133
AsuHPI	GGTGA	4 cut(s)	488, 841, 842, 879
AvaII	GGWCC	1 cut(s)	590
BaeI	ACNNNNGTAYC	2 cut(s)	167, 200
BalI	TGGCCA	1 cut(s)	680
BanI	GGYRCC	1 cut(s)	540
BbvI	GCAGC	4 cut(s)	55, 178, 388, 764
BccI	CCATC	1 cut(s)	892
BciT130I	CCWGG	2 cut(s)	573, 595
BcnI	CCSGG	1 cut(s)	133
BfaI	CTAG	3 cut(s)	57, 219, 500
BfmI	CTRYAG	4 cut(s)	405, 558, 687, 811
BglII	AGATCT	1 cut(s)	261
BisI	GCNGC	6 cut(s)	69, 192, 297, 402, 504, 778
BlsI	GCNGC	6 cut(s)	70, 193, 298, 403, 505, 779
BmcAI	AGTACT	1 cut(s)	61
Bme1390I	CCNGG	3 cut(s)	133, 573, 595
Bme18I	GGWCC	1 cut(s)	590
BmgBI	CACGTC	1 cut(s)	805
BmgT120I	GGNCC	2 cut(s)	590, 597
BmiI	GGNNCC	3 cut(s)	542, 570, 592
BmrFI	CCNGG	3 cut(s)	133, 573, 595
BmsI	GCATC	2 cut(s)	205, 870
Bpu10I	CCTNAGC	1 cut(s)	429
BpuEI	CTTGAG	2 cut(s)	425, 439
BpuMI	CCSGG	1 cut(s)	133
BsaJI	CCNNGG	4 cut(s)	199, 593, 594, 745
BsaWI	WCCGGW	1 cut(s)	92
Bsc4I	CCNNNNNNNGG	2 cut(s)	550, 587
Bse118I	RCCGGY	1 cut(s)	92
Bse1I	ACTGG	4 cut(s)	363, 507, 592, 890
Bse3DI	GCAATG	1 cut(s)	434
BseBI	CCWGG	2 cut(s)	573, 595
BseDI	CCNNGG	4 cut(s)	199, 593, 594, 745
BseGI	GGATG	3 cut(s)	46, 577, 861
BseLI	CCNNNNNNNGG	2 cut(s)	550, 587
BseMI	GCAATG	1 cut(s)	434
BseMII	CTCAG	1 cut(s)	100
BseNI	ACTGG	4 cut(s)	363, 507, 592, 890
BseXI	GCAGC	4 cut(s)	55, 178, 388, 764
BsgI	GTGCAG	1 cut(s)	688
BshFI	GGCC	2 cut(s)	599, 680
BshNI	GGYRCC	1 cut(s)	540
BshTI	ACCGGT	1 cut(s)	92
BsiSI	CCGG	2 cut(s)	93, 133
BslFI	GGGAC	1 cut(s)	576
BslI	CCNNNNNNNGG	2 cut(s)	550, 587
BsmFI	GGGAC	1 cut(s)	576
BsmI	GAATGC	2 cut(s)	194, 885
BsnI	GGCC	2 cut(s)	599, 680
Bsp143I	GATC	2 cut(s)	238, 261
BspACI	CCGC	3 cut(s)	296, 348, 504
BspANI	GGCC	2 cut(s)	599, 680
BspCNI	CTCAG	1 cut(s)	99
BspLI	GGNNCC	3 cut(s)	542, 570, 592
BspPI	GGATC	1 cut(s)	233
BspT107I	GGYRCC	1 cut(s)	540
BsrDI	GCAATG	1 cut(s)	434
BsrFI	RCCGGY	1 cut(s)	92
BsrI	ACTGG	4 cut(s)	363, 507, 592, 890
BssAI	RCCGGY	1 cut(s)	92
BssECI	CCNNGG	4 cut(s)	199, 593, 594, 745
BssMI	GATC	2 cut(s)	238, 261
BssT1I	CCWWGG	1 cut(s)	745
Bst2UI	CCWGG	2 cut(s)	573, 595
Bst4CI	ACNGT	4 cut(s)	64, 79, 183, 225
BstC8I	GCNNGC	1 cut(s)	348
BstDEI	CTNAG	2 cut(s)	86, 429
BstF5I	GGATG	3 cut(s)	46, 577, 861
BstKTI	GATC	2 cut(s)	241, 264
BstMBI	GATC	2 cut(s)	238, 261
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstNI	CCWGG	2 cut(s)	573, 595
BstNSI	RCATGY	1 cut(s)	293
BstSCI	CCNGG	3 cut(s)	131, 571, 593
BstSFI	CTRYAG	4 cut(s)	405, 558, 687, 811
BstV1I	GCAGC	4 cut(s)	55, 178, 388, 764
BstX2I	RGATCY	1 cut(s)	261
BstYI	RGATCY	1 cut(s)	261
BsuRI	GGCC	2 cut(s)	599, 680
BtrI	CACGTC	1 cut(s)	805
BtsCI	GGATG	3 cut(s)	46, 577, 861
BtsI	GCAGTG	1 cut(s)	681
BtsIMutI	CAGTG	3 cut(s)	179, 585, 681
Cac8I	GCNNGC	1 cut(s)	348
Cfr10I	RCCGGY	1 cut(s)	92
Cfr13I	GGNCC	2 cut(s)	590, 597
CsiI	ACCWGGT	1 cut(s)	571
Csp6I	GTAC	5 cut(s)	60, 75, 184, 541, 893
CspAI	ACCGGT	1 cut(s)	92
CviAII	CATG	7 cut(s)	137, 188, 236, 290, 368, 638, 854
CviJI	RGCY	9 cut(s)	257, 299, 389, 503, 599, 680, 760, 777, 836
CviKI_1	RGCY	9 cut(s)	257, 299, 389, 503, 599, 680, 760, 777, 836
CviQI	GTAC	5 cut(s)	60, 75, 184, 541, 893
DdeI	CTNAG	2 cut(s)	86, 429
DpnI	GATC	2 cut(s)	240, 263
DpnII	GATC	2 cut(s)	238, 261
DraIII	CACNNNGTG	1 cut(s)	467
EaeI	YGGCCR	1 cut(s)	678
Eco130I	CCWWGG	1 cut(s)	745
Eco47I	GGWCC	1 cut(s)	590
Eco57I	CTGAAG	1 cut(s)	171
EcoRII	CCWGG	2 cut(s)	571, 593
EcoT14I	CCWWGG	1 cut(s)	745
ErhI	CCWWGG	1 cut(s)	745
FaeI	CATG	7 cut(s)	140, 191, 239, 293, 371, 641, 857
FaqI	GGGAC	1 cut(s)	576
FatI	CATG	7 cut(s)	136, 187, 235, 289, 367, 637, 853
FauI	CCCGC	1 cut(s)	355
FauNDI	CATATG	1 cut(s)	342
Fnu4HI	GCNGC	6 cut(s)	69, 192, 297, 402, 504, 778
FokI	GGATG	3 cut(s)	53, 564, 848
Fsp4HI	GCNGC	6 cut(s)	69, 192, 297, 402, 504, 778
FspBI	CTAG	3 cut(s)	57, 219, 500
GluI	GCNGC	6 cut(s)	69, 192, 297, 402, 504, 778
HaeIII	GGCC	2 cut(s)	599, 680
HapII	CCGG	2 cut(s)	93, 133
Hin1II	CATG	7 cut(s)	140, 191, 239, 293, 371, 641, 857
HincII	GTYRAC	1 cut(s)	129
HindII	GTYRAC	1 cut(s)	129
HpaII	CCGG	2 cut(s)	93, 133
HphI	GGTGA	4 cut(s)	488, 841, 842, 879
Hpy166II	GTNNAC	3 cut(s)	129, 384, 808
Hpy188I	TCNGA	5 cut(s)	89, 200, 316, 520, 909
Hpy188III	TCNNGA	1 cut(s)	11
Hpy8I	GTNNAC	3 cut(s)	129, 384, 808
HpyAV	CCTTC	3 cut(s)	299, 592, 668
HpyCH4III	ACNGT	4 cut(s)	64, 79, 183, 225
HpyCH4IV	ACGT	1 cut(s)	804
HpyCH4V	TGCA	6 cut(s)	113, 194, 248, 284, 705, 780
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
HpyF3I	CTNAG	2 cut(s)	86, 429
HpySE526I	ACGT	1 cut(s)	804
Hsp92II	CATG	7 cut(s)	140, 191, 239, 293, 371, 641, 857
KpnI	GGTACC	1 cut(s)	544
Kzo9I	GATC	2 cut(s)	238, 261
LmnI	GCTCC	1 cut(s)	232
Lsp1109I	GCAGC	4 cut(s)	55, 178, 388, 764
LweI	GCATC	2 cut(s)	205, 870
MabI	ACCWGGT	1 cut(s)	571
MaeI	CTAG	3 cut(s)	57, 219, 500
MaeII	ACGT	1 cut(s)	804
MaeIII	GTNAC	3 cut(s)	308, 553, 848
MalI	GATC	2 cut(s)	240, 263
MboI	GATC	2 cut(s)	238, 261
MboII	GAAGA	6 cut(s)	99, 164, 224, 340, 495, 507
MfeI	CAATTG	1 cut(s)	205
MflI	RGATCY	1 cut(s)	261
MlsI	TGGCCA	1 cut(s)	680
MluCI	AATT	7 cut(s)	29, 205, 268, 317, 530, 621, 928
MluNI	TGGCCA	1 cut(s)	680
MmeI	TCCRAC	1 cut(s)	18
MnlI	CCTC	7 cut(s)	194, 401, 414, 559, 610, 691, 896
Mox20I	TGGCCA	1 cut(s)	680
MscI	TGGCCA	1 cut(s)	680
MseI	TTAA	2 cut(s)	620, 873
Msp20I	TGGCCA	1 cut(s)	680
MspI	CCGG	2 cut(s)	93, 133
MspR9I	CCNGG	3 cut(s)	133, 573, 595
MunI	CAATTG	1 cut(s)	205
Mva1269I	GAATGC	2 cut(s)	194, 885
MvaI	CCWGG	2 cut(s)	573, 595
MwoI	GCNNNNNNNGC	1 cut(s)	254
NciI	CCSGG	1 cut(s)	133
NdeI	CATATG	1 cut(s)	342
NdeII	GATC	2 cut(s)	238, 261
NlaIII	CATG	7 cut(s)	140, 191, 239, 293, 371, 641, 857
NlaIV	GGNNCC	3 cut(s)	542, 570, 592
NmuCI	GTSAC	2 cut(s)	308, 848
NspI	RCATGY	1 cut(s)	293
PasI	CCCWGGG	1 cut(s)	594
PciI	ACATGT	1 cut(s)	289
PctI	GAATGC	2 cut(s)	194, 885
PinAI	ACCGGT	1 cut(s)	92
PkrI	GCNGC	6 cut(s)	70, 193, 298, 403, 505, 779
PscI	ACATGT	1 cut(s)	289
Psp6I	CCWGG	2 cut(s)	571, 593
PspGI	CCWGG	2 cut(s)	571, 593
PspN4I	GGNNCC	3 cut(s)	542, 570, 592
PspPI	GGNCC	2 cut(s)	590, 597
PsrI	GAACNNNNNNTAC	2 cut(s)	152, 184
PsuI	RGATCY	1 cut(s)	261
RsaI	GTAC	5 cut(s)	61, 76, 185, 542, 894
RsaNI	GTAC	5 cut(s)	60, 75, 184, 541, 893
SaqAI	TTAA	2 cut(s)	620, 873
SatI	GCNGC	6 cut(s)	69, 192, 297, 402, 504, 778
Sau3AI	GATC	2 cut(s)	238, 261
Sau96I	GGNCC	2 cut(s)	590, 597
ScaI	AGTACT	1 cut(s)	61
ScrFI	CCNGG	3 cut(s)	133, 573, 595
SexAI	ACCWGGT	1 cut(s)	571
SfaNI	GCATC	2 cut(s)	205, 870
SfcI	CTRYAG	4 cut(s)	405, 558, 687, 811
SinI	GGWCC	1 cut(s)	590
SmlI	CTYRAG	2 cut(s)	418, 440
SmoI	CTYRAG	2 cut(s)	418, 440
Sse9I	AATT	7 cut(s)	29, 205, 268, 317, 530, 621, 928
SsiI	CCGC	3 cut(s)	296, 348, 504
SspMI	CTAG	3 cut(s)	57, 219, 500
StyD4I	CCNGG	3 cut(s)	131, 571, 593
StyI	CCWWGG	1 cut(s)	745
TaaI	ACNGT	4 cut(s)	64, 79, 183, 225
TaiI	ACGT	1 cut(s)	807
TaqI	TCGA	1 cut(s)	914
TasI	AATT	7 cut(s)	29, 205, 268, 317, 530, 621, 928
TatI	WGTACW	2 cut(s)	59, 892
TauI	GCSGC	2 cut(s)	299, 506
Tru1I	TTAA	2 cut(s)	620, 873
Tru9I	TTAA	2 cut(s)	620, 873
TscAI	CASTG	3 cut(s)	186, 592, 688
TseFI	GTSAC	2 cut(s)	308, 848
TseI	GCWGC	4 cut(s)	68, 191, 401, 777
Tsp45I	GTSAC	2 cut(s)	308, 848
TspDTI	ATGAA	5 cut(s)	153, 369, 387, 626, 870
TspRI	CASTG	3 cut(s)	186, 592, 688
VpaK11BI	GGWCC	1 cut(s)	590
XapI	RAATTY	3 cut(s)	268, 317, 928
XceI	RCATGY	1 cut(s)	293
XspI	CTAG	3 cut(s)	57, 219, 500
ZrmI	AGTACT	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.