Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002012

Physical Location & Seq

Genomic Coordinates Reverse (-)

4198748 .. 4200518

Gene Structure 1771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0054500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGAAATATCCTACTTTGTATAAGGTTGCTCGTGACATTCTAGCTATTCCTGTATCTACTGTTGCCTCAGAGTCGACATTTAGTACTGGTGGAAGGATTGTGAGCCCGCATAGGAACCGACTTCACTCAAACACAGTGGAGGCTTTAATGTGTGCTCGTGATTGGATGTGGAGTGAGATACGAGATGCTCCTAGCACATTAGAGGATGATGTTAATGTTGATGAGGAGTCTTGCCATGATATTGATGATGATCTTACTCTACTTCAGAGGATGCAGGGCGACATTGATACACCCAGAGGAAGAGCACACTCTTCACCTTTATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005886 GO:0006810 GO:0006887 GO:0006888 GO:0006996 GO:0007010 GO:0007163 GO:0008092 GO:0008093 GO:0008104 GO:0008150 GO:0009987 GO:0014731 GO:0016020 GO:0016043 GO:0016192 GO:0016323 GO:0019899 GO:0030011 GO:0030016 GO:0030017 GO:0030507 GO:0030674 GO:0031430 GO:0031672 GO:0032940 GO:0033036 GO:0034613 GO:0035088 GO:0035090 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043292 GO:0044422 GO:0044424 GO:0044425 GO:0044444 GO:0044449 GO:0044459 GO:0044464 GO:0045197 GO:0045199 GO:0046903 GO:0046907 GO:0048193 GO:0051117 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060090 GO:0061245 GO:0070727 GO:0071840 GO:0071944 GO:0072657 GO:0072659 GO:0098590 GO:0099080 GO:0099081 GO:0099512 GO:1990778

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 PGG

Protein Analysis

108

Amino Acids

12.17

Weight (kDa)

4.87

Isoelectric Point (pI)

47.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimer_Tnp_hAT	PF05699	2 - 56	2.5e-23	hAT family C-terminal dimerisation region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002012)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06040
fragaria_vesca	FvH4_1g08600 FvH4_1g08600 FvH4_1g08610 FvH4_1g08610
malus_domestica	MD02G1090200.v1.1 MD02G1090300.v1.1 MD02G1090400.v1.1 MD15G1216800.v1.1 MD15G1217000.v1.1
prunus_persica	Prupe.7G199500_v2.0.a1 Prupe.7G199600_v2.0.a1 Prupe.7G199800_v2.0.a1 Prupe.7G199800_v2.0.a1
pyrus_communis	pycom02g07210 pycom02g07220 pycom02g07230 pycom15g19230 pycom15g19240
rosa_chinensis	RchiOBHm_Chr2g0093971 RchiOBHm_Chr2g0094821 RchiOBHm_Chr2g0094831 RchiOBHm_Chr5g0043671
rosa_laevigata	RLG00000016524
rosa_multiflora	Rmu_sc0003027.1_g000001 Rmu_sc0006422.1_g000027 Rmu_sc0018486.1_g000002
rosa_roxburghii	Rroxscaffold_1G00075090 Rroxscaffold_2G00146830 Rroxscaffold_2G00146840
rosa_rugosa	Rorug02G0047100 Rorug02G0047100 Rorug02G0054500 Rorug02G0054600 Rorug02G0054700
rosa_samantha	Rh2AG094700 Rh2AG094800 Rh2BG095300 Rh2BG095400 Rh2CG097100 Rh2CG097200 Rh2CG097300 Rh2DG094100 Rh2DG094200 Rh7BG370500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	74
AciI	CCGC	1 cut(s)	107
AcuI	CTGAAG	1 cut(s)	248
AfaI	GTAC	1 cut(s)	85
AluBI	AGCT	1 cut(s)	44
AluI	AGCT	1 cut(s)	44
Alw21I	GWGCWC	2 cut(s)	157, 307
AsuHPI	GGTGA	1 cut(s)	306
BanII	GRGCYC	1 cut(s)	107
BauI	CACGAG	2 cut(s)	30, 156
Bbv12I	GWGCWC	2 cut(s)	157, 307
BfaI	CTAG	2 cut(s)	41, 192
BmcAI	AGTACT	1 cut(s)	85
BmiI	GGNNCC	1 cut(s)	116
BmsI	GCATC	2 cut(s)	175, 261
BsaBI	GATNNNNATC	1 cut(s)	249
Bse1I	ACTGG	1 cut(s)	91
Bse8I	GATNNNNATC	1 cut(s)	249
BseGI	GGATG	3 cut(s)	171, 211, 276
BseJI	GATNNNNATC	1 cut(s)	249
BseMII	CTCAG	1 cut(s)	81
BseNI	ACTGG	1 cut(s)	91
BseRI	GAGGAG	1 cut(s)	239
BsiHKAI	GWGCWC	2 cut(s)	157, 307
Bsp1286I	GDGCHC	3 cut(s)	107, 157, 307
Bsp143I	GATC	1 cut(s)	250
BspACI	CCGC	1 cut(s)	107
BspCNI	CTCAG	1 cut(s)	80
BspLI	GGNNCC	1 cut(s)	116
BspQI	GCTCTTC	1 cut(s)	295
BsrI	ACTGG	1 cut(s)	91
BssMI	GATC	1 cut(s)	250
BssSI	CACGAG	2 cut(s)	30, 156
Bst2BI	CACGAG	2 cut(s)	30, 156
Bst4CI	ACNGT	2 cut(s)	61, 136
Bst6I	CTCTTC	2 cut(s)	295, 316
BstC8I	GCNNGC	1 cut(s)	107
BstDEI	CTNAG	1 cut(s)	67
BstF5I	GGATG	3 cut(s)	171, 211, 276
BstKTI	GATC	1 cut(s)	253
BstMBI	GATC	1 cut(s)	250
BtsCI	GGATG	3 cut(s)	171, 211, 276
BtsIMutI	CAGTG	1 cut(s)	141
Cac8I	GCNNGC	1 cut(s)	107
Csp6I	GTAC	1 cut(s)	84
CspCI	CAANNNNNGTGG	2 cut(s)	117, 152
CviAII	CATG	1 cut(s)	236
CviJI	RGCY	3 cut(s)	44, 105, 143
CviKI_1	RGCY	3 cut(s)	44, 105, 143
CviQI	GTAC	1 cut(s)	84
DdeI	CTNAG	1 cut(s)	67
DpnI	GATC	1 cut(s)	252
DpnII	GATC	1 cut(s)	250
Eam1104I	CTCTTC	2 cut(s)	295, 316
EarI	CTCTTC	2 cut(s)	295, 316
Eco24I	GRGCYC	1 cut(s)	107
Eco57I	CTGAAG	1 cut(s)	248
EcoT38I	GRGCYC	1 cut(s)	107
FaeI	CATG	1 cut(s)	239
FaiI	YATR	3 cut(s)	21, 111, 237
FatI	CATG	1 cut(s)	235
FauI	CCCGC	1 cut(s)	114
FblI	GTMKAC	1 cut(s)	74
FokI	GGATG	3 cut(s)	178, 218, 283
FriOI	GRGCYC	1 cut(s)	107
FspBI	CTAG	2 cut(s)	41, 192
Hin1II	CATG	1 cut(s)	239
HincII	GTYRAC	1 cut(s)	75
HindII	GTYRAC	1 cut(s)	75
HinfI	GANTC	2 cut(s)	71, 227
HphI	GGTGA	1 cut(s)	306
Hpy166II	GTNNAC	1 cut(s)	75
Hpy188I	TCNGA	2 cut(s)	70, 267
Hpy188III	TCNNGA	2 cut(s)	32, 158
Hpy8I	GTNNAC	1 cut(s)	75
HpyAV	CCTTC	1 cut(s)	87
HpyCH4III	ACNGT	2 cut(s)	61, 136
HpyCH4V	TGCA	1 cut(s)	274
HpyF3I	CTNAG	1 cut(s)	67
Hsp92II	CATG	1 cut(s)	239
Kzo9I	GATC	1 cut(s)	250
LguI	GCTCTTC	1 cut(s)	295
LmnI	GCTCC	1 cut(s)	193
LpnPI	CCDG	4 cut(s)	63, 72, 260, 307
LweI	GCATC	2 cut(s)	175, 261
MaeI	CTAG	2 cut(s)	41, 192
MaeIII	GTNAC	1 cut(s)	32
MalI	GATC	1 cut(s)	252
MboI	GATC	1 cut(s)	250
MboII	GAAGA	2 cut(s)	303, 312
MhlI	GDGCHC	3 cut(s)	107, 157, 307
MlyI	GAGTC	2 cut(s)	80, 236
MnlI	CCTC	6 cut(s)	76, 133, 196, 217, 261, 290
MseI	TTAA	2 cut(s)	146, 213
NdeII	GATC	1 cut(s)	250
NlaIII	CATG	1 cut(s)	239
NlaIV	GGNNCC	1 cut(s)	116
NmuCI	GTSAC	1 cut(s)	32
PciSI	GCTCTTC	1 cut(s)	295
PleI	GAGTC	2 cut(s)	79, 235
PpsI	GAGTC	2 cut(s)	79, 235
PspN4I	GGNNCC	1 cut(s)	116
RsaI	GTAC	1 cut(s)	85
RsaNI	GTAC	1 cut(s)	84
SalI	GTCGAC	1 cut(s)	73
SapI	GCTCTTC	1 cut(s)	295
SaqAI	TTAA	2 cut(s)	146, 213
Sau3AI	GATC	1 cut(s)	250
ScaI	AGTACT	1 cut(s)	85
SchI	GAGTC	2 cut(s)	80, 236
SduI	GDGCHC	3 cut(s)	107, 157, 307
SetI	ASST	3 cut(s)	27, 46, 319
SfaNI	GCATC	2 cut(s)	175, 261
SsiI	CCGC	1 cut(s)	107
SspMI	CTAG	2 cut(s)	41, 192
TaaI	ACNGT	2 cut(s)	61, 136
TaqI	TCGA	1 cut(s)	74
TatI	WGTACW	1 cut(s)	83
Tru1I	TTAA	2 cut(s)	146, 213
Tru9I	TTAA	2 cut(s)	146, 213
TscAI	CASTG	1 cut(s)	141
TseFI	GTSAC	1 cut(s)	32
Tsp45I	GTSAC	1 cut(s)	32
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	141
XmiI	GTMKAC	1 cut(s)	74
XspI	CTAG	2 cut(s)	41, 192
ZrmI	AGTACT	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.