Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002012

Physical Location & Seq

Genomic Coordinates Reverse (-)

7037383 .. 7041834

Gene Structure 4452 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46900

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGACACTCCAGGATGCAAAACTTAGACATCACTGTGCAGTTGAACTAGTAAAGCAAATTTGCATAGAACTTTCACGTTCGCATATGTCATGGCGTTTGAACTATGTTTTGAATTCAGAAATCCTGTACATAGCCACTCTTAATGGGATAACTGAAATCATTAGTACACTCCTTGGGTTTTTCCCTGATCTAATATGGGCTCAGCTCAGCAACAACCAGTATTTCTTACTTCCTTTTGCTATTGAGCTTCGACATGAAAATATTTTCCGTCTTGTGTGTGACCACACTGCACGCAGTAAAATAATGGCATCTACATTACTAGAATCTGGCACCATCTTGCATTTGGCAGCAAAGTTGGCACCTCCGGCCCAACTTACATCCGTATGTGGTGCAGCTCTACAAATGCAAAGAGAATTGCCGTGGTTCAAGAATGTAGTTCATCCTTATTATAAGCAGAGTAAGAATGGAGATGAAAAGACTGCTAAAGAACTATTAAAGTTGGCCGAGAAAGGGGAGAAGTGGCTGAATGATACTTCGAATGCATGCATGGTTGTTGCAACTCTAATTGCTACGGTGGTTTTTGCTGCTGCTTTTACAGTTCCTGGTGGTAGCGACGAAGCAGATGGAAACTCAAATTTCTTAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005886 GO:0006810 GO:0006887 GO:0006888 GO:0006996 GO:0007010 GO:0007163 GO:0008092 GO:0008093 GO:0008104 GO:0008150 GO:0009987 GO:0014731 GO:0016020 GO:0016043 GO:0016192 GO:0016323 GO:0019899 GO:0030011 GO:0030016 GO:0030017 GO:0030507 GO:0030674 GO:0031430 GO:0031672 GO:0032940 GO:0033036 GO:0034613 GO:0035088 GO:0035090 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043292 GO:0044422 GO:0044424 GO:0044425 GO:0044444 GO:0044449 GO:0044459 GO:0044464 GO:0045197 GO:0045199 GO:0046903 GO:0046907 GO:0048193 GO:0051117 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060090 GO:0061245 GO:0070727 GO:0071840 GO:0071944 GO:0072657 GO:0072659 GO:0098590 GO:0099080 GO:0099081 GO:0099512 GO:1990778

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 PGG

Protein Analysis

215

Amino Acids

24.02

Weight (kDa)

6.65

Isoelectric Point (pI)

43.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PGG	PF13962	172 - 209	2.5e-12	Domain of unknown function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002012)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06040
fragaria_vesca	FvH4_1g08600 FvH4_1g08600 FvH4_1g08610 FvH4_1g08610
malus_domestica	MD02G1090200.v1.1 MD02G1090300.v1.1 MD02G1090400.v1.1 MD15G1216800.v1.1 MD15G1217000.v1.1
prunus_persica	Prupe.7G199500_v2.0.a1 Prupe.7G199600_v2.0.a1 Prupe.7G199800_v2.0.a1 Prupe.7G199800_v2.0.a1
pyrus_communis	pycom02g07210 pycom02g07220 pycom02g07230 pycom15g19230 pycom15g19240
rosa_chinensis	RchiOBHm_Chr2g0093971 RchiOBHm_Chr2g0094821 RchiOBHm_Chr2g0094831 RchiOBHm_Chr5g0043671
rosa_laevigata	RLG00000016524
rosa_multiflora	Rmu_sc0003027.1_g000001 Rmu_sc0006422.1_g000027 Rmu_sc0018486.1_g000002
rosa_roxburghii	Rroxscaffold_1G00075090 Rroxscaffold_2G00146830 Rroxscaffold_2G00146840
rosa_rugosa	Rorug02G0047100 Rorug02G0047100 Rorug02G0054500 Rorug02G0054600 Rorug02G0054700
rosa_samantha	Rh2AG094700 Rh2AG094800 Rh2BG095300 Rh2BG095400 Rh2CG097100 Rh2CG097200 Rh2CG097300 Rh2DG094100 Rh2DG094200 Rh7BG370500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	450
AccB1I	GGYRCC	2 cut(s)	329, 358
AcoI	YGGCCR	1 cut(s)	501
AcsI	RAATTY	3 cut(s)	57, 112, 634
AfaI	GTAC	2 cut(s)	128, 166
AfiI	CCNNNNNNNGG	1 cut(s)	510
AgsI	TTSAA	4 cut(s)	44, 100, 112, 427
AhlI	ACTAGT	1 cut(s)	46
AjnI	CCWGG	2 cut(s)	9, 601
AluBI	AGCT	3 cut(s)	205, 247, 395
AluI	AGCT	3 cut(s)	205, 247, 395
AlwNI	CAGNNNCTG	1 cut(s)	602
AoxI	GGCC	2 cut(s)	366, 501
ApeKI	GCWGC	4 cut(s)	347, 392, 584, 587
ApoI	RAATTY	3 cut(s)	57, 112, 634
AspS9I	GGNCC	1 cut(s)	367
AsuII	TTCGAA	1 cut(s)	536
BanI	GGYRCC	2 cut(s)	329, 358
BanII	GRGCYC	1 cut(s)	202
BbvI	GCAGC	4 cut(s)	359, 404, 571, 574
BccI	CCATC	2 cut(s)	341, 617
BceAI	ACGGC	1 cut(s)	403
BciT130I	CCWGG	2 cut(s)	11, 603
BcuI	ACTAGT	1 cut(s)	46
BfaI	CTAG	2 cut(s)	47, 320
BisI	GCNGC	4 cut(s)	348, 393, 585, 588
BlpI	GCTNAGC	2 cut(s)	201, 206
BlsI	GCNGC	4 cut(s)	349, 394, 586, 589
Bme1390I	CCNGG	2 cut(s)	11, 603
BmgT120I	GGNCC	1 cut(s)	367
BmiI	GGNNCC	2 cut(s)	331, 360
BmrFI	CCNGG	2 cut(s)	11, 603
BmsI	GCATC	2 cut(s)	4, 317
Bpu1102I	GCTNAGC	2 cut(s)	201, 206
Bpu14I	TTCGAA	1 cut(s)	536
BsaJI	CCNNGG	2 cut(s)	172, 419
Bsc4I	CCNNNNNNNGG	1 cut(s)	510
Bse1I	ACTGG	1 cut(s)	217
BseBI	CCWGG	2 cut(s)	11, 603
BseDI	CCNNGG	2 cut(s)	172, 419
BseGI	GGATG	3 cut(s)	19, 377, 439
BseLI	CCNNNNNNNGG	1 cut(s)	510
BseMII	CTCAG	2 cut(s)	215, 220
BseNI	ACTGG	1 cut(s)	217
BseXI	GCAGC	4 cut(s)	359, 404, 571, 574
BsgI	GTGCAG	3 cut(s)	57, 273, 411
BshFI	GGCC	2 cut(s)	368, 503
BshNI	GGYRCC	2 cut(s)	329, 358
BsiSI	CCGG	1 cut(s)	365
BslI	CCNNNNNNNGG	1 cut(s)	510
BsmI	GAATGC	1 cut(s)	544
BsnI	GGCC	2 cut(s)	368, 503
Bsp119I	TTCGAA	1 cut(s)	536
Bsp1286I	GDGCHC	1 cut(s)	202
Bsp1407I	TGTACA	1 cut(s)	126
Bsp143I	GATC	1 cut(s)	187
Bsp1720I	GCTNAGC	2 cut(s)	201, 206
BspANI	GGCC	2 cut(s)	368, 503
BspCNI	CTCAG	2 cut(s)	214, 219
BspLI	GGNNCC	2 cut(s)	331, 360
BspT104I	TTCGAA	1 cut(s)	536
BspT107I	GGYRCC	2 cut(s)	329, 358
BsrGI	TGTACA	1 cut(s)	126
BsrI	ACTGG	1 cut(s)	217
BssECI	CCNNGG	2 cut(s)	172, 419
BssMI	GATC	1 cut(s)	187
BssT1I	CCWWGG	1 cut(s)	172
Bst2UI	CCWGG	2 cut(s)	11, 603
Bst4CI	ACNGT	3 cut(s)	35, 574, 598
BstAUI	TGTACA	1 cut(s)	126
BstBI	TTCGAA	1 cut(s)	536
BstC8I	GCNNGC	2 cut(s)	292, 544
BstDEI	CTNAG	3 cut(s)	23, 201, 206
BstDSI	CCRYGG	1 cut(s)	419
BstF5I	GGATG	3 cut(s)	19, 377, 439
BstKTI	GATC	1 cut(s)	190
BstMBI	GATC	1 cut(s)	187
BstMWI	GCNNNNNNNGC	2 cut(s)	356, 365
BstNI	CCWGG	2 cut(s)	11, 603
BstNSI	RCATGY	1 cut(s)	546
BstSCI	CCNGG	2 cut(s)	9, 601
BstV1I	GCAGC	4 cut(s)	359, 404, 571, 574
BsuRI	GGCC	2 cut(s)	368, 503
BtgI	CCRYGG	1 cut(s)	419
BtsCI	GGATG	3 cut(s)	19, 377, 439
BtsI	GCAGTG	1 cut(s)	285
BtsIMutI	CAGTG	2 cut(s)	31, 285
Cac8I	GCNNGC	2 cut(s)	292, 544
CaiI	CAGNNNCTG	1 cut(s)	602
Cfr13I	GGNCC	1 cut(s)	367
Csp6I	GTAC	2 cut(s)	127, 165
CviAII	CATG	4 cut(s)	90, 254, 543, 547
CviJI	RGCY	8 cut(s)	134, 200, 205, 247, 368, 395, 503, 523
CviKI_1	RGCY	8 cut(s)	134, 200, 205, 247, 368, 395, 503, 523
CviQI	GTAC	2 cut(s)	127, 165
DdeI	CTNAG	3 cut(s)	23, 201, 206
DpnI	GATC	1 cut(s)	189
DpnII	GATC	1 cut(s)	187
EaeI	YGGCCR	1 cut(s)	501
Eco130I	CCWWGG	1 cut(s)	172
Eco24I	GRGCYC	1 cut(s)	202
EcoRI	GAATTC	1 cut(s)	112
EcoRII	CCWGG	2 cut(s)	9, 601
EcoT14I	CCWWGG	1 cut(s)	172
EcoT22I	ATGCAT	2 cut(s)	544, 548
EcoT38I	GRGCYC	1 cut(s)	202
ErhI	CCWWGG	1 cut(s)	172
FaeI	CATG	4 cut(s)	93, 257, 546, 550
FatI	CATG	4 cut(s)	89, 253, 542, 546
FauNDI	CATATG	1 cut(s)	84
Fnu4HI	GCNGC	4 cut(s)	348, 393, 585, 588
FokI	GGATG	3 cut(s)	26, 364, 426
FriOI	GRGCYC	1 cut(s)	202
Fsp4HI	GCNGC	4 cut(s)	348, 393, 585, 588
FspBI	CTAG	2 cut(s)	47, 320
GluI	GCNGC	4 cut(s)	348, 393, 585, 588
HaeIII	GGCC	2 cut(s)	368, 503
HapII	CCGG	1 cut(s)	365
Hin1II	CATG	4 cut(s)	93, 257, 546, 550
HinfI	GANTC	1 cut(s)	323
HpaII	CCGG	1 cut(s)	365
Hpy166II	GTNNAC	1 cut(s)	167
Hpy188I	TCNGA	1 cut(s)	118
Hpy188III	TCNNGA	1 cut(s)	427
Hpy8I	GTNNAC	1 cut(s)	167
Hpy99I	CGWCG	1 cut(s)	617
HpyCH4III	ACNGT	3 cut(s)	35, 574, 598
HpyCH4IV	ACGT	1 cut(s)	76
HpyF10VI	GCNNNNNNNGC	2 cut(s)	356, 365
HpyF3I	CTNAG	3 cut(s)	23, 201, 206
HpySE526I	ACGT	1 cut(s)	76
Hsp92II	CATG	4 cut(s)	93, 257, 546, 550
Kzo9I	GATC	1 cut(s)	187
LpnPI	CCDG	8 cut(s)	23, 137, 198, 230, 312, 378, 588, 615
Lsp1109I	GCAGC	4 cut(s)	359, 404, 571, 574
LweI	GCATC	2 cut(s)	4, 317
MaeI	CTAG	2 cut(s)	47, 320
MaeII	ACGT	1 cut(s)	76
MaeIII	GTNAC	1 cut(s)	278
MalI	GATC	1 cut(s)	189
MboI	GATC	1 cut(s)	187
MhlI	GDGCHC	1 cut(s)	202
MluCI	AATT	5 cut(s)	57, 112, 413, 564, 634
MnlI	CCTC	1 cut(s)	372
Mph1103I	ATGCAT	2 cut(s)	544, 548
MseI	TTAA	3 cut(s)	141, 494, 641
MslI	CAYNNNNRTG	2 cut(s)	33, 382
MspI	CCGG	1 cut(s)	365
MspR9I	CCNGG	2 cut(s)	11, 603
Mva1269I	GAATGC	1 cut(s)	544
MvaI	CCWGG	2 cut(s)	11, 603
MwoI	GCNNNNNNNGC	2 cut(s)	356, 365
NdeI	CATATG	1 cut(s)	84
NdeII	GATC	1 cut(s)	187
NlaIII	CATG	4 cut(s)	93, 257, 546, 550
NlaIV	GGNNCC	2 cut(s)	331, 360
NmeAIII	GCCGAG	1 cut(s)	529
NmuCI	GTSAC	1 cut(s)	278
NsiI	ATGCAT	2 cut(s)	544, 548
NspI	RCATGY	1 cut(s)	546
NspV	TTCGAA	1 cut(s)	536
PaeI	GCATGC	1 cut(s)	546
PctI	GAATGC	1 cut(s)	544
PfeI	GAWTC	1 cut(s)	323
PfoI	TCCNGGA	1 cut(s)	9
PkrI	GCNGC	4 cut(s)	349, 394, 586, 589
PsiI	TTATAA	1 cut(s)	450
Psp6I	CCWGG	2 cut(s)	9, 601
PspGI	CCWGG	2 cut(s)	9, 601
PspN4I	GGNNCC	2 cut(s)	331, 360
PspPI	GGNCC	1 cut(s)	367
PstNI	CAGNNNCTG	1 cut(s)	602
RsaI	GTAC	2 cut(s)	128, 166
RsaNI	GTAC	2 cut(s)	127, 165
RseI	CAYNNNNRTG	2 cut(s)	33, 382
SaqAI	TTAA	3 cut(s)	141, 494, 641
SatI	GCNGC	4 cut(s)	348, 393, 585, 588
Sau3AI	GATC	1 cut(s)	187
Sau96I	GGNCC	1 cut(s)	367
ScrFI	CCNGG	2 cut(s)	11, 603
SduI	GDGCHC	1 cut(s)	202
SetI	ASST	5 cut(s)	79, 207, 249, 364, 397
SfaNI	GCATC	2 cut(s)	4, 317
SfuI	TTCGAA	1 cut(s)	536
SmiMI	CAYNNNNRTG	2 cut(s)	33, 382
SpeI	ACTAGT	1 cut(s)	46
SphI	GCATGC	1 cut(s)	546
Sse9I	AATT	5 cut(s)	57, 112, 413, 564, 634
SspI	AATATT	1 cut(s)	262
SspMI	CTAG	2 cut(s)	47, 320
StyD4I	CCNGG	2 cut(s)	9, 601
StyI	CCWWGG	1 cut(s)	172
TaaI	ACNGT	3 cut(s)	35, 574, 598
TaiI	ACGT	1 cut(s)	79
TaqI	TCGA	2 cut(s)	250, 536
TasI	AATT	5 cut(s)	57, 112, 413, 564, 634
TatI	WGTACW	2 cut(s)	126, 164
TfiI	GAWTC	1 cut(s)	323
Tru1I	TTAA	3 cut(s)	141, 494, 641
Tru9I	TTAA	3 cut(s)	141, 494, 641
TscAI	CASTG	2 cut(s)	38, 292
TseFI	GTSAC	1 cut(s)	278
TseI	GCWGC	4 cut(s)	347, 392, 584, 587
Tsp45I	GTSAC	1 cut(s)	278
TspDTI	ATGAA	3 cut(s)	270, 428, 486
TspGWI	ACGGA	2 cut(s)	257, 370
TspRI	CASTG	2 cut(s)	38, 292
XapI	RAATTY	3 cut(s)	57, 112, 634
XceI	RCATGY	1 cut(s)	546
XcmI	CCANNNNNNNNNTGG	1 cut(s)	340
XspI	CTAG	2 cut(s)	47, 320
Zsp2I	ATGCAT	2 cut(s)	544, 548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.