Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002012

Physical Location & Seq

Genomic Coordinates Forward (+)

8079622 .. 8080056

Gene Structure 435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG097300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGACACTCCAGGATGCAAAACTTAGACATCACTGTGCAGTTGAATTAGTAAAGCAAATTTGCATAGAACTTTCGCGTTCGCATATGTCATGGCGTTTGAACTATCTTTTGAATTCAGAAATCCTGTATATAGCCACTCTTAATGGGATAACTGAAATCATTAGTACACTCCTTGAGTTTTTCCCTGATCTAATATGGGCTCGGCTCAGAAACAACCAGTATTTGTTACTTCCTTTTGCTATTGAGCTTCGACATGAAAAGGTTTTCCGTCTTGTGTGTGACCACACTGCACGCAGTAAATTAATGGCATCTACATTACTTGAATCTGGCACCATCTTGCATCTGGCAGCAAAGTTGGCACCTCCGGCCCAACTCACATCCGTATGTGGTGCAGCTCTACAAATGCAAAGAGAATTGCAGTGGTTCAAGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005886 GO:0006810 GO:0006887 GO:0006888 GO:0006996 GO:0007010 GO:0007163 GO:0008092 GO:0008093 GO:0008104 GO:0008150 GO:0009987 GO:0014731 GO:0016020 GO:0016043 GO:0016192 GO:0016323 GO:0019899 GO:0030011 GO:0030016 GO:0030017 GO:0030507 GO:0030674 GO:0031430 GO:0031672 GO:0032940 GO:0033036 GO:0034613 GO:0035088 GO:0035090 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043292 GO:0044422 GO:0044424 GO:0044425 GO:0044444 GO:0044449 GO:0044459 GO:0044464 GO:0045197 GO:0045199 GO:0046903 GO:0046907 GO:0048193 GO:0051117 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060090 GO:0061245 GO:0070727 GO:0071840 GO:0071944 GO:0072657 GO:0072659 GO:0098590 GO:0099080 GO:0099081 GO:0099512 GO:1990778

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 PGG

Protein Analysis

144

Amino Acids

16.57

Weight (kDa)

8.78

Isoelectric Point (pI)

52.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002012)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06040
fragaria_vesca	FvH4_1g08600 FvH4_1g08600 FvH4_1g08610 FvH4_1g08610
malus_domestica	MD02G1090200.v1.1 MD02G1090300.v1.1 MD02G1090400.v1.1 MD15G1216800.v1.1 MD15G1217000.v1.1
prunus_persica	Prupe.7G199500_v2.0.a1 Prupe.7G199600_v2.0.a1 Prupe.7G199800_v2.0.a1 Prupe.7G199800_v2.0.a1
pyrus_communis	pycom02g07210 pycom02g07220 pycom02g07230 pycom15g19230 pycom15g19240
rosa_chinensis	RchiOBHm_Chr2g0093971 RchiOBHm_Chr2g0094821 RchiOBHm_Chr2g0094831 RchiOBHm_Chr5g0043671
rosa_laevigata	RLG00000016524
rosa_multiflora	Rmu_sc0003027.1_g000001 Rmu_sc0006422.1_g000027 Rmu_sc0018486.1_g000002
rosa_roxburghii	Rroxscaffold_1G00075090 Rroxscaffold_2G00146830 Rroxscaffold_2G00146840
rosa_rugosa	Rorug02G0047100 Rorug02G0047100 Rorug02G0054500 Rorug02G0054600 Rorug02G0054700
rosa_samantha	Rh2AG094700 Rh2AG094800 Rh2BG095300 Rh2BG095400 Rh2CG097100 Rh2CG097200 Rh2CG097300 Rh2DG094100 Rh2DG094200 Rh7BG370500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	329, 358
AccII	CGCG	1 cut(s)	76
AcsI	RAATTY	2 cut(s)	57, 112
AfaI	GTAC	1 cut(s)	166
AgsI	TTSAA	5 cut(s)	44, 100, 112, 323, 427
AjnI	CCWGG	1 cut(s)	9
AluBI	AGCT	2 cut(s)	247, 395
AluI	AGCT	2 cut(s)	247, 395
AoxI	GGCC	1 cut(s)	366
ApeKI	GCWGC	2 cut(s)	347, 392
ApoI	RAATTY	2 cut(s)	57, 112
AseI	ATTAAT	1 cut(s)	302
AspS9I	GGNCC	1 cut(s)	367
BanI	GGYRCC	2 cut(s)	329, 358
BanII	GRGCYC	1 cut(s)	202
BbvI	GCAGC	2 cut(s)	359, 404
BccI	CCATC	1 cut(s)	341
BciT130I	CCWGG	1 cut(s)	11
BisI	GCNGC	2 cut(s)	348, 393
BlsI	GCNGC	2 cut(s)	349, 394
Bme1390I	CCNGG	1 cut(s)	11
BmgT120I	GGNCC	1 cut(s)	367
BmiI	GGNNCC	2 cut(s)	331, 360
BmrFI	CCNGG	1 cut(s)	11
BmsI	GCATC	3 cut(s)	4, 317, 349
BpuEI	CTTGAG	1 cut(s)	194
Bse1I	ACTGG	1 cut(s)	217
BseBI	CCWGG	1 cut(s)	11
BseGI	GGATG	2 cut(s)	19, 377
BseMII	CTCAG	1 cut(s)	220
BseNI	ACTGG	1 cut(s)	217
BseXI	GCAGC	2 cut(s)	359, 404
BsgI	GTGCAG	3 cut(s)	57, 273, 411
Bsh1236I	CGCG	1 cut(s)	76
BshFI	GGCC	1 cut(s)	368
BshNI	GGYRCC	2 cut(s)	329, 358
BsiSI	CCGG	1 cut(s)	365
BsnI	GGCC	1 cut(s)	368
Bsp1286I	GDGCHC	1 cut(s)	202
Bsp143I	GATC	1 cut(s)	187
BspANI	GGCC	1 cut(s)	368
BspCNI	CTCAG	1 cut(s)	219
BspFNI	CGCG	1 cut(s)	76
BspLI	GGNNCC	2 cut(s)	331, 360
BspT107I	GGYRCC	2 cut(s)	329, 358
BsrI	ACTGG	1 cut(s)	217
BssMI	GATC	1 cut(s)	187
Bst2UI	CCWGG	1 cut(s)	11
Bst4CI	ACNGT	1 cut(s)	35
BstC8I	GCNNGC	1 cut(s)	292
BstDEI	CTNAG	2 cut(s)	23, 206
BstF5I	GGATG	2 cut(s)	19, 377
BstFNI	CGCG	1 cut(s)	76
BstKTI	GATC	1 cut(s)	190
BstMBI	GATC	1 cut(s)	187
BstMWI	GCNNNNNNNGC	2 cut(s)	356, 365
BstNI	CCWGG	1 cut(s)	11
BstSCI	CCNGG	1 cut(s)	9
BstUI	CGCG	1 cut(s)	76
BstV1I	GCAGC	2 cut(s)	359, 404
BsuRI	GGCC	1 cut(s)	368
BtsCI	GGATG	2 cut(s)	19, 377
BtsI	GCAGTG	2 cut(s)	285, 425
BtsIMutI	CAGTG	3 cut(s)	31, 285, 425
Cac8I	GCNNGC	1 cut(s)	292
Cfr13I	GGNCC	1 cut(s)	367
Csp6I	GTAC	1 cut(s)	165
CviAII	CATG	2 cut(s)	90, 254
CviJI	RGCY	6 cut(s)	134, 200, 205, 247, 368, 395
CviKI_1	RGCY	6 cut(s)	134, 200, 205, 247, 368, 395
CviQI	GTAC	1 cut(s)	165
DdeI	CTNAG	2 cut(s)	23, 206
DpnI	GATC	1 cut(s)	189
DpnII	GATC	1 cut(s)	187
Eco24I	GRGCYC	1 cut(s)	202
EcoRI	GAATTC	1 cut(s)	112
EcoRII	CCWGG	1 cut(s)	9
EcoT38I	GRGCYC	1 cut(s)	202
FaeI	CATG	2 cut(s)	93, 257
FaiI	YATR	9 cut(s)	65, 84, 86, 91, 129, 131, 196, 255, 385
FatI	CATG	2 cut(s)	89, 253
FauNDI	CATATG	1 cut(s)	84
Fnu4HI	GCNGC	2 cut(s)	348, 393
FokI	GGATG	2 cut(s)	26, 364
FriOI	GRGCYC	1 cut(s)	202
Fsp4HI	GCNGC	2 cut(s)	348, 393
GluI	GCNGC	2 cut(s)	348, 393
HaeIII	GGCC	1 cut(s)	368
HapII	CCGG	1 cut(s)	365
Hin1II	CATG	2 cut(s)	93, 257
HinfI	GANTC	1 cut(s)	323
HpaII	CCGG	1 cut(s)	365
Hpy166II	GTNNAC	1 cut(s)	167
Hpy188I	TCNGA	2 cut(s)	118, 209
Hpy8I	GTNNAC	1 cut(s)	167
HpyCH4III	ACNGT	1 cut(s)	35
HpyCH4V	TGCA	8 cut(s)	17, 38, 63, 290, 340, 392, 406, 418
HpyF10VI	GCNNNNNNNGC	2 cut(s)	356, 365
HpyF3I	CTNAG	2 cut(s)	23, 206
Hsp92II	CATG	2 cut(s)	93, 257
Kzo9I	GATC	1 cut(s)	187
LpnPI	CCDG	7 cut(s)	23, 137, 198, 230, 312, 329, 378
Lsp1109I	GCAGC	2 cut(s)	359, 404
LweI	GCATC	3 cut(s)	4, 317, 349
MaeIII	GTNAC	2 cut(s)	225, 278
MalI	GATC	1 cut(s)	189
MboI	GATC	1 cut(s)	187
MhlI	GDGCHC	1 cut(s)	202
MluCI	AATT	5 cut(s)	44, 57, 112, 299, 413
MnlI	CCTC	1 cut(s)	372
MseI	TTAA	2 cut(s)	141, 302
MslI	CAYNNNNRTG	2 cut(s)	33, 382
MspI	CCGG	1 cut(s)	365
MspR9I	CCNGG	1 cut(s)	11
MvaI	CCWGG	1 cut(s)	11
MvnI	CGCG	1 cut(s)	76
MwoI	GCNNNNNNNGC	2 cut(s)	356, 365
NdeI	CATATG	1 cut(s)	84
NdeII	GATC	1 cut(s)	187
NlaIII	CATG	2 cut(s)	93, 257
NlaIV	GGNNCC	2 cut(s)	331, 360
NmeAIII	GCCGAG	1 cut(s)	181
NmuCI	GTSAC	1 cut(s)	278
PfeI	GAWTC	1 cut(s)	323
PfoI	TCCNGGA	1 cut(s)	9
PkrI	GCNGC	2 cut(s)	349, 394
PshBI	ATTAAT	1 cut(s)	302
Psp6I	CCWGG	1 cut(s)	9
PspGI	CCWGG	1 cut(s)	9
PspN4I	GGNNCC	2 cut(s)	331, 360
PspPI	GGNCC	1 cut(s)	367
RsaI	GTAC	1 cut(s)	166
RsaNI	GTAC	1 cut(s)	165
RseI	CAYNNNNRTG	2 cut(s)	33, 382
SaqAI	TTAA	2 cut(s)	141, 302
SatI	GCNGC	2 cut(s)	348, 393
Sau3AI	GATC	1 cut(s)	187
Sau96I	GGNCC	1 cut(s)	367
ScrFI	CCNGG	1 cut(s)	11
SduI	GDGCHC	1 cut(s)	202
SetI	ASST	5 cut(s)	249, 264, 364, 397, 432
SfaNI	GCATC	3 cut(s)	4, 317, 349
SmiMI	CAYNNNNRTG	2 cut(s)	33, 382
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
Sse9I	AATT	5 cut(s)	44, 57, 112, 299, 413
StyD4I	CCNGG	1 cut(s)	9
TaaI	ACNGT	1 cut(s)	35
TaqI	TCGA	1 cut(s)	250
TasI	AATT	5 cut(s)	44, 57, 112, 299, 413
TatI	WGTACW	1 cut(s)	164
TfiI	GAWTC	1 cut(s)	323
Tru1I	TTAA	2 cut(s)	141, 302
Tru9I	TTAA	2 cut(s)	141, 302
TscAI	CASTG	3 cut(s)	38, 292, 425
TseFI	GTSAC	1 cut(s)	278
TseI	GCWGC	2 cut(s)	347, 392
Tsp45I	GTSAC	1 cut(s)	278
TspDTI	ATGAA	1 cut(s)	270
TspGWI	ACGGA	2 cut(s)	257, 370
TspRI	CASTG	3 cut(s)	38, 292, 425
VspI	ATTAAT	1 cut(s)	302
XapI	RAATTY	2 cut(s)	57, 112
XcmI	CCANNNNNNNNNTGG	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.