Rroxscaffold_1G00075090

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0002012
Physical Location & Seq
Reverse (-)
95855226 .. 95857426
2201 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00075090.1

Sequence Viewer

Length: 252 bp
ATGAAACAGAAGAGCAATTGGGAAATTGAACAAGGAAACAGACCGGGGGTCATGACCGAAACAGAAACAGGAAGACTTGAAAAATACAAAGATTTGGAATTTATATATGGGGATCAAACCAGTCCAATGGCCAGCAGTGACTTAAGGAAGGTGAAATATTGTACTGTGAGTGAAAGGCCAACAGCCAATGGTGCAGTAGTGAAAGGCCAAACACCGAAGTTGAAACGAAGATCCCCGGAGCATCAAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

9.47

Weight (kDa)

9.37

Isoelectric Point (pI)

58.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 120, 225
AcoI YGGCCR 1 cut(s) 129
AcsI RAATTY 1 cut(s) 98
AfaI GTAC 1 cut(s) 163
AflII CTTAAG 1 cut(s) 142
AgsI TTSAA 3 cut(s) 29, 80, 223
AhdI GACNNNNNGTC 1 cut(s) 47
AlwI GGATC 2 cut(s) 120, 225
AoxI GGCC 3 cut(s) 129, 176, 205
ApoI RAATTY 1 cut(s) 98
AsuC2I CCSGG 2 cut(s) 45, 236
AsuHPI GGTGA 1 cut(s) 163
BalI TGGCCA 1 cut(s) 131
BbsI GAAGAC 1 cut(s) 79
BcnI CCSGG 2 cut(s) 45, 236
BfrI CTTAAG 1 cut(s) 142
Bme1390I CCNGG 2 cut(s) 45, 236
BmeRI GACNNNNNGTC 1 cut(s) 47
BmrFI CCNGG 2 cut(s) 45, 236
BpiI GAAGAC 1 cut(s) 79
BpuMI CCSGG 2 cut(s) 45, 236
BsaJI CCNNGG 2 cut(s) 44, 234
Bse1I ACTGG 1 cut(s) 120
BseDI CCNNGG 2 cut(s) 44, 234
BseNI ACTGG 1 cut(s) 120
BsgI GTGCAG 1 cut(s) 213
BshFI GGCC 3 cut(s) 131, 178, 207
BsiSI CCGG 2 cut(s) 44, 236
BsnI GGCC 3 cut(s) 131, 178, 207
Bsp143I GATC 2 cut(s) 112, 230
BspANI GGCC 3 cut(s) 131, 178, 207
BspHI TCATGA 1 cut(s) 51
BspPI GGATC 2 cut(s) 120, 225
BspQI GCTCTTC 1 cut(s) 5
BspTI CTTAAG 1 cut(s) 142
BsrI ACTGG 1 cut(s) 120
BssECI CCNNGG 2 cut(s) 44, 234
BssMI GATC 2 cut(s) 112, 230
Bst4CI ACNGT 1 cut(s) 166
Bst6I CTCTTC 1 cut(s) 5
BstAFI CTTAAG 1 cut(s) 142
BstC8I GCNNGC 1 cut(s) 133
BstKTI GATC 2 cut(s) 115, 233
BstMBI GATC 2 cut(s) 112, 230
BstMWI GCNNNNNNNGC 1 cut(s) 191
BstSCI CCNGG 2 cut(s) 43, 234
BstV2I GAAGAC 1 cut(s) 79
BstX2I RGATCY 1 cut(s) 230
BstXI CCANNNNNNTGG 1 cut(s) 127
BstYI RGATCY 1 cut(s) 230
BsuRI GGCC 3 cut(s) 131, 178, 207
BtsI GCAGTG 1 cut(s) 142
BtsIMutI CAGTG 1 cut(s) 142
Cac8I GCNNGC 1 cut(s) 133
CciI TCATGA 1 cut(s) 51
Csp6I GTAC 1 cut(s) 162
CviAII CATG 1 cut(s) 52
CviJI RGCY 4 cut(s) 131, 178, 185, 207
CviKI_1 RGCY 4 cut(s) 131, 178, 185, 207
CviQI GTAC 1 cut(s) 162
DpnI GATC 2 cut(s) 114, 232
DpnII GATC 2 cut(s) 112, 230
DriI GACNNNNNGTC 1 cut(s) 47
EaeI YGGCCR 1 cut(s) 129
Eam1104I CTCTTC 1 cut(s) 5
Eam1105I GACNNNNNGTC 1 cut(s) 47
EarI CTCTTC 1 cut(s) 5
FaeI CATG 1 cut(s) 55
FaiI YATR 4 cut(s) 53, 104, 106, 108
FatI CATG 1 cut(s) 51
HaeIII GGCC 3 cut(s) 131, 178, 207
HapII CCGG 2 cut(s) 44, 236
Hin1II CATG 1 cut(s) 55
HpaII CCGG 2 cut(s) 44, 236
HphI GGTGA 1 cut(s) 163
Hpy188III TCNNGA 1 cut(s) 52
HpyAV CCTTC 1 cut(s) 142
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4V TGCA 1 cut(s) 194
HpyF10VI GCNNNNNNNGC 1 cut(s) 191
Hsp92II CATG 1 cut(s) 55
Kzo9I GATC 2 cut(s) 112, 230
LguI GCTCTTC 1 cut(s) 5
LmnI GCTCC 1 cut(s) 238
LpnPI CCDG 4 cut(s) 54, 57, 133, 145
MaeIII GTNAC 1 cut(s) 137
MalI GATC 2 cut(s) 114, 232
MboI GATC 2 cut(s) 112, 230
MboII GAAGA 3 cut(s) 22, 84, 240
MfeI CAATTG 1 cut(s) 16
MflI RGATCY 1 cut(s) 230
MlsI TGGCCA 1 cut(s) 131
MluCI AATT 3 cut(s) 16, 24, 98
MluNI TGGCCA 1 cut(s) 131
Mox20I TGGCCA 1 cut(s) 131
MscI TGGCCA 1 cut(s) 131
MseI TTAA 2 cut(s) 143, 250
Msp20I TGGCCA 1 cut(s) 131
MspCI CTTAAG 1 cut(s) 142
MspI CCGG 2 cut(s) 44, 236
MspR9I CCNGG 2 cut(s) 45, 236
MunI CAATTG 1 cut(s) 16
MwoI GCNNNNNNNGC 1 cut(s) 191
NciI CCSGG 2 cut(s) 45, 236
NdeII GATC 2 cut(s) 112, 230
NlaIII CATG 1 cut(s) 55
NmuCI GTSAC 1 cut(s) 137
PagI TCATGA 1 cut(s) 51
PciSI GCTCTTC 1 cut(s) 5
PsuI RGATCY 1 cut(s) 230
RsaI GTAC 1 cut(s) 163
RsaNI GTAC 1 cut(s) 162
SapI GCTCTTC 1 cut(s) 5
SaqAI TTAA 2 cut(s) 143, 250
Sau3AI GATC 2 cut(s) 112, 230
ScrFI CCNGG 2 cut(s) 45, 236
SetI ASST 1 cut(s) 153
SmlI CTYRAG 1 cut(s) 142
SmoI CTYRAG 1 cut(s) 142
Sse9I AATT 3 cut(s) 16, 24, 98
SspI AATATT 1 cut(s) 158
StyD4I CCNGG 2 cut(s) 43, 234
TaaI ACNGT 1 cut(s) 166
TaqII GACCGA 1 cut(s) 71
TasI AATT 3 cut(s) 16, 24, 98
TatI WGTACW 1 cut(s) 161
Tru1I TTAA 2 cut(s) 143, 250
Tru9I TTAA 2 cut(s) 143, 250
TscAI CASTG 1 cut(s) 142
TseFI GTSAC 1 cut(s) 137
Tsp45I GTSAC 1 cut(s) 137
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 142
Vha464I CTTAAG 1 cut(s) 142
XapI RAATTY 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.