MD07G1185800.v1.1

ribosome localization

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0005205
Physical Location & Seq
Forward (+)
26673103 .. 26676772
3670 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1185800.v1.1.491

Sequence Viewer

Length: 636 bp
ATGATAATAAATAGGCAGCCGCAGAATCAGCCAAGCCATATAAAAGTAGGCTCCCTGCCCACCTCCATACTTAAATCGCCGCCTTCGTCTACGTCTGTCTCTCTCACTCAGCTGCGACTTTTAGATTCTCTCTCTATCGCCACTCGCCGCCTCGAAGCCGCAATGGCTTTGTCGAACCAACAGACTGTTGATTATCCAAGCTTCAAGCTCGTCATCGTCGGCGATGGAGGCACTGGTGTTACGTGTGTGCTTCATCTTTATCATGTGTTTTGTATGTGCTTCACATGTGTTTTAGGCATCTCACTGGTGAATTCGAGAAGAAATATGAGCATAAGAGACTTTTCTGACATTTCCGTCCATTGCGCCGTGTTCCACCATTGGTGTGGAGGTTCATCCACTGGACTTCTTCACAAATTGTGGAAGGATCCGCTTTTACTTCTGGGACACTGCTGGGCAAGAGAAGTTTGGCGCTCTTCGAGATGGTCGCTACATTCATGGGCAATGTGCAACTACAACTTAGAAACCCTCCTCTACTTGGCAAGGAAGCTTGCAGGGCATGAAGCTGAGCTTGCGGCAACAGCTGCCCAACCTCTTCCTGATGACGATGACGAGGCATTTGAATGGACGGGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000054 GO:0000055 GO:0000056 GO:0000060 GO:0000070 GO:0000166 GO:0000226 GO:0000278 GO:0000280 GO:0000287 GO:0000819 GO:0001654 GO:0001673 GO:0001882 GO:0001883 GO:0002177 GO:0003006 GO:0003407 GO:0003674 GO:0003676 GO:0003682 GO:0003712 GO:0003713 GO:0003723 GO:0003824 GO:0003924 GO:0005049 GO:0005102 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005730 GO:0005737 GO:0005768 GO:0005814 GO:0005815 GO:0005829 GO:0005856 GO:0005929 GO:0006139 GO:0006163 GO:0006259 GO:0006355 GO:0006403 GO:0006404 GO:0006405 GO:0006409 GO:0006606 GO:0006611 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0007059 GO:0007154 GO:0007165 GO:0007275 GO:0007276 GO:0007281 GO:0007283 GO:0007286 GO:0007399 GO:0007417 GO:0007420 GO:0007423 GO:0008104 GO:0008134 GO:0008150 GO:0008152 GO:0009116 GO:0009117 GO:0009119 GO:0009141 GO:0009144 GO:0009150 GO:0009199 GO:0009205 GO:0009259 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010586 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0012505 GO:0014070 GO:0015031 GO:0015630 GO:0015833 GO:0015931 GO:0016032 GO:0016043 GO:0016070 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017038 GO:0017076 GO:0017111 GO:0019001 GO:0019003 GO:0019058 GO:0019216 GO:0019218 GO:0019219 GO:0019222 GO:0019637 GO:0019693 GO:0019904 GO:0019953 GO:0021537 GO:0021543 GO:0021761 GO:0021766 GO:0022402 GO:0022412 GO:0022414 GO:0022613 GO:0023052 GO:0030029 GO:0030036 GO:0030154 GO:0030496 GO:0030518 GO:0030521 GO:0030522 GO:0030900 GO:0031047 GO:0031074 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031410 GO:0031503 GO:0031514 GO:0031960 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0031982 GO:0032092 GO:0032386 GO:0032388 GO:0032501 GO:0032502 GO:0032504 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032870 GO:0032879 GO:0032880 GO:0032991 GO:0033036 GO:0033157 GO:0033365 GO:0033750 GO:0033993 GO:0034504 GO:0034613 GO:0034629 GO:0034641 GO:0034660 GO:0035068 GO:0035194 GO:0035195 GO:0035257 GO:0035258 GO:0035281 GO:0035639 GO:0036094 GO:0036126 GO:0040029 GO:0042221 GO:0042254 GO:0042272 GO:0042278 GO:0042565 GO:0042886 GO:0042995 GO:0043010 GO:0043073 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043393 GO:0043401 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044281 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044450 GO:0044451 GO:0044464 GO:0044703 GO:0044766 GO:0044877 GO:0045184 GO:0045505 GO:0045540 GO:0045893 GO:0045935 GO:0046039 GO:0046128 GO:0046483 GO:0046794 GO:0046822 GO:0046824 GO:0046825 GO:0046827 GO:0046872 GO:0046890 GO:0046907 GO:0046982 GO:0046983 GO:0048232 GO:0048285 GO:0048468 GO:0048513 GO:0048515 GO:0048518 GO:0048519 GO:0048522 GO:0048545 GO:0048609 GO:0048731 GO:0048856 GO:0048869 GO:0050657 GO:0050658 GO:0050681 GO:0050789 GO:0050794 GO:0050810 GO:0050896 GO:0051030 GO:0051031 GO:0051049 GO:0051050 GO:0051098 GO:0051099 GO:0051168 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051236 GO:0051252 GO:0051254 GO:0051276 GO:0051385 GO:0051427 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0051704 GO:0051716 GO:0055037 GO:0055086 GO:0060041 GO:0060255 GO:0060322 GO:0060341 GO:0061015 GO:0061676 GO:0062012 GO:0065007 GO:0065009 GO:0070013 GO:0070201 GO:0070727 GO:0070883 GO:0070887 GO:0071166 GO:0071310 GO:0071383 GO:0071384 GO:0071389 GO:0071396 GO:0071407 GO:0071426 GO:0071428 GO:0071431 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072521 GO:0072594 GO:0075733 GO:0080090 GO:0090087 GO:0090181 GO:0090304 GO:0090316 GO:0097064 GO:0097159 GO:0097223 GO:0097367 GO:0097708 GO:0097729 GO:0098813 GO:0106118 GO:0120025 GO:0140014 GO:0140104 GO:0140110 GO:0140142 GO:1901068 GO:1901135 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901657 GO:1902570 GO:1902579 GO:1902680 GO:1902850 GO:1902930 GO:1903047 GO:1903506 GO:1903508 GO:1903827 GO:1903829 GO:1904951 GO:1990904 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03008 ko03013 ko05166 ko05169 map03008 map03013 map05166 map05169
Pfam Domains
Protein Families
Ras

Protein Analysis

212

Amino Acids

23.53

Weight (kDa)

7.66

Isoelectric Point (pI)

40.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 353
AccI GTMKAC 1 cut(s) 89
AciI CCGC 6 cut(s) 20, 80, 148, 159, 428, 572
AclWI GGATC 2 cut(s) 419, 432
AcsI RAATTY 1 cut(s) 310
AfiI CCNNNNNNNGG 1 cut(s) 535
AflIII ACRYGT 2 cut(s) 242, 284
AgsI TTSAA 2 cut(s) 205, 620
AluBI AGCT 7 cut(s) 112, 201, 208, 547, 563, 568, 581
AluI AGCT 7 cut(s) 112, 201, 208, 547, 563, 568, 581
Alw26I GTCTC 2 cut(s) 103, 330
AlwI GGATC 2 cut(s) 419, 432
ApeKI GCWGC 3 cut(s) 16, 112, 581
ApoI RAATTY 1 cut(s) 310
ArsI GACNNNNNNTTYG 2 cut(s) 599, 631
AspLEI GCGC 2 cut(s) 365, 471
AsuHPI GGTGA 1 cut(s) 319
BamHI GGATCC 1 cut(s) 424
BbvI GCAGC 3 cut(s) 28, 99, 568
BccI CCATC 2 cut(s) 218, 474
BceAI ACGGC 1 cut(s) 350
BcoDI GTCTC 2 cut(s) 103, 330
BfoI RGCGCY 1 cut(s) 472
BglI GCCNNNNNGGC 1 cut(s) 164
BisI GCNGC 8 cut(s) 17, 20, 80, 113, 148, 159, 573, 582
BlpI GCTNAGC 1 cut(s) 564
BlsI GCNGC 8 cut(s) 18, 21, 81, 114, 149, 160, 574, 583
BmiI GGNNCC 2 cut(s) 52, 426
BmsI GCATC 1 cut(s) 306
Bpu1102I GCTNAGC 1 cut(s) 564
BsaAI YACGTR 1 cut(s) 243
Bsc4I CCNNNNNNNGG 1 cut(s) 535
Bse1I ACTGG 3 cut(s) 238, 309, 403
Bse3DI GCAATG 3 cut(s) 168, 358, 507
BseGI GGATG 1 cut(s) 392
BseLI CCNNNNNNNGG 1 cut(s) 535
BseMI GCAATG 3 cut(s) 168, 358, 507
BseMII CTCAG 2 cut(s) 122, 555
BseNI ACTGG 3 cut(s) 238, 309, 403
BseRI GAGGAG 1 cut(s) 518
BseXI GCAGC 3 cut(s) 28, 99, 568
BseYI CCCAGC 1 cut(s) 450
BslFI GGGAC 1 cut(s) 456
BslI CCNNNNNNNGG 1 cut(s) 535
BsmAI GTCTC 2 cut(s) 103, 330
BsmFI GGGAC 1 cut(s) 456
Bsp143I GATC 1 cut(s) 424
Bsp1720I GCTNAGC 1 cut(s) 564
BspACI CCGC 6 cut(s) 20, 80, 148, 159, 428, 572
BspCNI CTCAG 2 cut(s) 121, 556
BspLI GGNNCC 2 cut(s) 52, 426
BspPI GGATC 2 cut(s) 419, 432
BspQI GCTCTTC 1 cut(s) 478
BsrDI GCAATG 3 cut(s) 168, 358, 507
BsrI ACTGG 3 cut(s) 238, 309, 403
BssMI GATC 1 cut(s) 424
Bst4CI ACNGT 1 cut(s) 187
Bst6I CTCTTC 2 cut(s) 478, 597
BstAPI GCANNNNNTGC 1 cut(s) 581
BstBAI YACGTR 1 cut(s) 243
BstC8I GCNNGC 2 cut(s) 549, 570
BstDEI CTNAG 3 cut(s) 108, 517, 564
BstF5I GGATG 1 cut(s) 392
BstH2I RGCGCY 1 cut(s) 472
BstHHI GCGC 2 cut(s) 365, 471
BstKTI GATC 1 cut(s) 427
BstMAI GTCTC 2 cut(s) 103, 330
BstMBI GATC 1 cut(s) 424
BstMWI GCNNNNNNNGC 7 cut(s) 28, 164, 228, 553, 569, 578, 581
BstNSI RCATGY 1 cut(s) 288
BstV1I GCAGC 3 cut(s) 28, 99, 568
BstX2I RGATCY 1 cut(s) 424
BstXI CCANNNNNNTGG 1 cut(s) 383
BstYI RGATCY 1 cut(s) 424
BtgZI GCGATG 1 cut(s) 237
BtsCI GGATG 1 cut(s) 392
BtsI GCAGTG 1 cut(s) 445
BtsIMutI CAGTG 4 cut(s) 231, 302, 396, 445
Cac8I GCNNGC 2 cut(s) 549, 570
CfoI GCGC 2 cut(s) 365, 471
CviAII CATG 4 cut(s) 263, 285, 495, 557
DdeI CTNAG 3 cut(s) 108, 517, 564
DpnI GATC 1 cut(s) 426
DpnII GATC 1 cut(s) 424
DrdI GACNNNNNNGTC 1 cut(s) 353
DseDI GACNNNNNNGTC 1 cut(s) 353
Eam1104I CTCTTC 2 cut(s) 478, 597
EarI CTCTTC 2 cut(s) 478, 597
EcoRI GAATTC 1 cut(s) 310
FaeI CATG 4 cut(s) 266, 288, 498, 560
FalI AAGNNNNNCTT 2 cut(s) 552, 584
FaqI GGGAC 1 cut(s) 456
FatI CATG 4 cut(s) 262, 284, 494, 556
FblI GTMKAC 1 cut(s) 89
Fnu4HI GCNGC 8 cut(s) 17, 20, 80, 113, 148, 159, 573, 582
FokI GGATG 1 cut(s) 379
Fsp4HI GCNGC 8 cut(s) 17, 20, 80, 113, 148, 159, 573, 582
GlaI GCGC 2 cut(s) 364, 470
GluI GCNGC 8 cut(s) 17, 20, 80, 113, 148, 159, 573, 582
GsaI CCCAGC 1 cut(s) 454
HaeII RGCGCY 1 cut(s) 472
HhaI GCGC 2 cut(s) 365, 471
Hin1II CATG 4 cut(s) 266, 288, 498, 560
Hin6I GCGC 2 cut(s) 363, 469
HinP1I GCGC 2 cut(s) 363, 469
HindIII AAGCTT 2 cut(s) 199, 545
HinfI GANTC 2 cut(s) 25, 125
HphI GGTGA 1 cut(s) 319
Hpy166II GTNNAC 1 cut(s) 90
Hpy188I TCNGA 1 cut(s) 346
Hpy188III TCNNGA 3 cut(s) 315, 477, 596
Hpy8I GTNNAC 1 cut(s) 90
Hpy99I CGWCG 1 cut(s) 221
HpyAV CCTTC 2 cut(s) 93, 415
HpyCH4III ACNGT 1 cut(s) 187
HpyCH4IV ACGT 2 cut(s) 92, 242
HpyCH4V TGCA 2 cut(s) 507, 551
HpyF10VI GCNNNNNNNGC 7 cut(s) 28, 164, 228, 553, 569, 578, 581
HpyF3I CTNAG 3 cut(s) 108, 517, 564
HpySE526I ACGT 2 cut(s) 92, 242
Hsp92II CATG 4 cut(s) 266, 288, 498, 560
HspAI GCGC 2 cut(s) 363, 469
Kzo9I GATC 1 cut(s) 424
LguI GCTCTTC 1 cut(s) 478
LmnI GCTCC 1 cut(s) 56
LpnPI CCDG 8 cut(s) 68, 219, 290, 384, 425, 436, 537, 609
Lsp1109I GCAGC 3 cut(s) 28, 99, 568
LweI GCATC 1 cut(s) 306
MaeII ACGT 2 cut(s) 92, 242
MaeIII GTNAC 1 cut(s) 238
MalI GATC 1 cut(s) 426
MboI GATC 1 cut(s) 424
MboII GAAGA 4 cut(s) 330, 398, 465, 584
MflI RGATCY 1 cut(s) 424
MluCI AATT 2 cut(s) 310, 413
MnlI CCTC 8 cut(s) 73, 161, 221, 380, 536, 539, 600, 604
MseI TTAA 1 cut(s) 72
MslI CAYNNNNRTG 2 cut(s) 381, 619
MspA1I CMGCKG 2 cut(s) 112, 581
MwoI GCNNNNNNNGC 7 cut(s) 28, 164, 228, 553, 569, 578, 581
NdeII GATC 1 cut(s) 424
NlaIII CATG 4 cut(s) 266, 288, 498, 560
NlaIV GGNNCC 2 cut(s) 52, 426
NspI RCATGY 1 cut(s) 288
PciI ACATGT 1 cut(s) 284
PciSI GCTCTTC 1 cut(s) 478
PcsI WCGNNNNNNNCGW 1 cut(s) 83
PfeI GAWTC 2 cut(s) 25, 125
PkrI GCNGC 8 cut(s) 18, 21, 81, 114, 149, 160, 574, 583
Ppu21I YACGTR 1 cut(s) 243
PscI ACATGT 1 cut(s) 284
PspFI CCCAGC 1 cut(s) 450
PspN4I GGNNCC 2 cut(s) 52, 426
PsuI RGATCY 1 cut(s) 424
PvuII CAGCTG 2 cut(s) 112, 581
RseI CAYNNNNRTG 2 cut(s) 381, 619
SapI GCTCTTC 1 cut(s) 478
SaqAI TTAA 1 cut(s) 72
SatI GCNGC 8 cut(s) 17, 20, 80, 113, 148, 159, 573, 582
Sau3AI GATC 1 cut(s) 424
SfaNI GCATC 1 cut(s) 306
SmiMI CAYNNNNRTG 2 cut(s) 381, 619
Sse9I AATT 2 cut(s) 310, 413
SsiI CCGC 6 cut(s) 20, 80, 148, 159, 428, 572
TaaI ACNGT 1 cut(s) 187
TaiI ACGT 2 cut(s) 95, 245
TaqI TCGA 4 cut(s) 153, 173, 314, 476
TasI AATT 2 cut(s) 310, 413
TauI GCSGC 5 cut(s) 22, 82, 150, 161, 575
TfiI GAWTC 2 cut(s) 25, 125
Tru1I TTAA 1 cut(s) 72
Tru9I TTAA 1 cut(s) 72
TscAI CASTG 4 cut(s) 238, 309, 403, 452
TseI GCWGC 3 cut(s) 16, 112, 581
TspDTI ATGAA 4 cut(s) 242, 381, 483, 573
TspGWI ACGGA 1 cut(s) 343
TspRI CASTG 4 cut(s) 238, 309, 403, 452
XapI RAATTY 1 cut(s) 310
XceI RCATGY 1 cut(s) 288
XcmI CCANNNNNNNNNTGG 1 cut(s) 380
XmiI GTMKAC 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.