Rmu_sc0003410.1_g000003

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003410.1
OG0005205
Physical Location & Seq
Reverse (-)
16316 .. 16636
321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003410.1_g000003.1.cds

Sequence Viewer

Length: 321 bp
atgggaggccgggctaagtatattgatcgtgcttcatcagttgagcatgtagagttattagtggggtttgaggctttagattttgcacgttctttgggtctgcaggcactgagatttgggacggattgctctaagttggctgtttctattgatctaccttcagactccgatcctagtgttcggtcgctgtacctggacctaaagcttcttcttgtcaatctagctggctgttactttaagcacatttatacagaaaataatggagtagctcactatttggctggttgggcgcttcattccaaggatttttcttctttttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3

Protein Analysis

106

Amino Acids

11.68

Weight (kDa)

6.02

Isoelectric Point (pI)

33.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 164
AcuI CTGAAG 1 cut(s) 144
AfaI GTAC 1 cut(s) 191
AjnI CCWGG 1 cut(s) 192
AluBI AGCT 3 cut(s) 205, 224, 269
AluI AGCT 3 cut(s) 205, 224, 269
AlwI GGATC 1 cut(s) 164
AlwNI CAGNNNCTG 1 cut(s) 109
AoxI GGCC 1 cut(s) 7
AspLEI GCGC 1 cut(s) 292
AspS9I GGNCC 1 cut(s) 196
AsuC2I CCSGG 1 cut(s) 11
AvaII GGWCC 1 cut(s) 196
BciT130I CCWGG 1 cut(s) 194
BcnI CCSGG 1 cut(s) 11
BfaI CTAG 2 cut(s) 174, 221
BfmI CTRYAG 1 cut(s) 101
BfoI RGCGCY 1 cut(s) 293
Bme1390I CCNGG 2 cut(s) 11, 194
Bme18I GGWCC 1 cut(s) 196
BmgT120I GGNCC 1 cut(s) 196
BmrFI CCNGG 2 cut(s) 11, 194
BpuMI CCSGG 1 cut(s) 11
BsaJI CCNNGG 1 cut(s) 300
BseBI CCWGG 1 cut(s) 194
BseDI CCNNGG 1 cut(s) 300
BseMII CTCAG 1 cut(s) 101
Bsh1285I CGRYCG 1 cut(s) 185
BshFI GGCC 1 cut(s) 9
BsiEI CGRYCG 1 cut(s) 185
BsiSI CCGG 1 cut(s) 10
BslFI GGGAC 1 cut(s) 133
BsmFI GGGAC 1 cut(s) 133
BsnI GGCC 1 cut(s) 9
Bsp143I GATC 3 cut(s) 25, 151, 169
BspANI GGCC 1 cut(s) 9
BspCNI CTCAG 1 cut(s) 102
BspMAI CTGCAG 1 cut(s) 105
BspPI GGATC 1 cut(s) 164
BssECI CCNNGG 1 cut(s) 300
BssMI GATC 3 cut(s) 25, 151, 169
BssT1I CCWWGG 1 cut(s) 300
Bst2UI CCWGG 1 cut(s) 194
BstC8I GCNNGC 2 cut(s) 105, 226
BstDEI CTNAG 3 cut(s) 15, 110, 132
BstH2I RGCGCY 1 cut(s) 293
BstHHI GCGC 1 cut(s) 292
BstKTI GATC 3 cut(s) 28, 154, 172
BstMBI GATC 3 cut(s) 25, 151, 169
BstMCI CGRYCG 1 cut(s) 185
BstMWI GCNNNNNNNGC 1 cut(s) 287
BstNI CCWGG 1 cut(s) 194
BstNSI RCATGY 1 cut(s) 50
BstSCI CCNGG 2 cut(s) 9, 192
BstSFI CTRYAG 1 cut(s) 101
BsuRI GGCC 1 cut(s) 9
BtsIMutI CAGTG 1 cut(s) 107
Cac8I GCNNGC 2 cut(s) 105, 226
CaiI CAGNNNCTG 1 cut(s) 109
CfoI GCGC 1 cut(s) 292
Cfr13I GGNCC 1 cut(s) 196
Csp6I GTAC 1 cut(s) 190
CviAII CATG 1 cut(s) 47
CviJI RGCY 9 cut(s) 9, 14, 74, 140, 205, 224, 228, 269, 281
CviKI_1 RGCY 9 cut(s) 9, 14, 74, 140, 205, 224, 228, 269, 281
CviQI GTAC 1 cut(s) 190
DdeI CTNAG 3 cut(s) 15, 110, 132
DpnI GATC 3 cut(s) 27, 153, 171
DpnII GATC 3 cut(s) 25, 151, 169
Eco130I CCWWGG 1 cut(s) 300
Eco47I GGWCC 1 cut(s) 196
Eco57I CTGAAG 1 cut(s) 144
EcoRII CCWGG 1 cut(s) 192
EcoT14I CCWWGG 1 cut(s) 300
ErhI CCWWGG 1 cut(s) 300
FaeI CATG 1 cut(s) 50
FaiI YATR 3 cut(s) 21, 48, 249
FaqI GGGAC 1 cut(s) 133
FatI CATG 1 cut(s) 46
FspBI CTAG 2 cut(s) 174, 221
GlaI GCGC 1 cut(s) 291
HaeII RGCGCY 1 cut(s) 293
HaeIII GGCC 1 cut(s) 9
HapII CCGG 1 cut(s) 10
HhaI GCGC 1 cut(s) 292
Hin1II CATG 1 cut(s) 50
Hin6I GCGC 1 cut(s) 290
HinP1I GCGC 1 cut(s) 290
HindIII AAGCTT 1 cut(s) 203
HinfI GANTC 1 cut(s) 164
HpaII CCGG 1 cut(s) 10
Hpy188I TCNGA 2 cut(s) 163, 169
HpyAV CCTTC 1 cut(s) 168
HpyCH4IV ACGT 1 cut(s) 88
HpyCH4V TGCA 2 cut(s) 86, 103
HpyF10VI GCNNNNNNNGC 1 cut(s) 287
HpyF3I CTNAG 3 cut(s) 15, 110, 132
HpySE526I ACGT 1 cut(s) 88
Hsp92II CATG 1 cut(s) 50
HspAI GCGC 1 cut(s) 290
Kzo9I GATC 3 cut(s) 25, 151, 169
LpnPI CCDG 6 cut(s) 23, 89, 179, 206, 210, 267
MaeI CTAG 2 cut(s) 174, 221
MaeII ACGT 1 cut(s) 88
MaeIII GTNAC 1 cut(s) 230
MalI GATC 3 cut(s) 27, 153, 171
MboI GATC 3 cut(s) 25, 151, 169
MboII GAAGA 2 cut(s) 200, 303
MlyI GAGTC 1 cut(s) 158
MnlI CCTC 1 cut(s) 64
MseI TTAA 2 cut(s) 237, 319
MspI CCGG 1 cut(s) 10
MspR9I CCNGG 2 cut(s) 11, 194
MvaI CCWGG 1 cut(s) 194
MwoI GCNNNNNNNGC 1 cut(s) 287
NciI CCSGG 1 cut(s) 11
NdeII GATC 3 cut(s) 25, 151, 169
NlaIII CATG 1 cut(s) 50
NspI RCATGY 1 cut(s) 50
PleI GAGTC 1 cut(s) 158
PpsI GAGTC 1 cut(s) 158
Psp6I CCWGG 1 cut(s) 192
PspGI CCWGG 1 cut(s) 192
PspPI GGNCC 1 cut(s) 196
PstI CTGCAG 1 cut(s) 105
PstNI CAGNNNCTG 1 cut(s) 109
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
SaqAI TTAA 2 cut(s) 237, 319
Sau3AI GATC 3 cut(s) 25, 151, 169
Sau96I GGNCC 1 cut(s) 196
SchI GAGTC 1 cut(s) 158
ScrFI CCNGG 2 cut(s) 11, 194
SetI ASST 7 cut(s) 91, 160, 195, 201, 207, 226, 271
SfcI CTRYAG 1 cut(s) 101
SinI GGWCC 1 cut(s) 196
SspMI CTAG 2 cut(s) 174, 221
StyD4I CCNGG 2 cut(s) 9, 192
StyI CCWWGG 1 cut(s) 300
TaiI ACGT 1 cut(s) 91
TaqII GACCGA 1 cut(s) 171
Tru1I TTAA 2 cut(s) 237, 319
Tru9I TTAA 2 cut(s) 237, 319
TscAI CASTG 1 cut(s) 114
TspDTI ATGAA 2 cut(s) 24, 284
TspGWI ACGGA 1 cut(s) 137
TspRI CASTG 1 cut(s) 114
VpaK11BI GGWCC 1 cut(s) 196
XceI RCATGY 1 cut(s) 50
XspI CTAG 2 cut(s) 174, 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.