Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011124.1

Orthogroup ID

OG0005205

Physical Location & Seq

Genomic Coordinates Reverse (-)

451 .. 1476

Gene Structure 1026 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011124.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

atggagattctatcatggaatatcaggggtaccaaagaccctaagaaattcagggctttggcgtcgattattcagcagagacgtcctagtattgtgttcttgatcaagacaaagtgtagagacaagcaagcattcgaacggttccgcaacgatttgggtttccgtcatggcataatgcaagagtgttctgatacgggtggaggaggtttgatgctattgtggggggatgaaattgatcttcatctccggtcgcactcaccgcatcacattgatgtagatgttgtgctgccggaatctgaaggagggagatggcgactcacaggtttttatgggcatccagaagctcatctccgctctgcgtcctgggatttgttgcgtctgcttgccttcatgccaggttctcctaactggttggtggttggtgatctaaatgaaatcatcagctcgagggagaaatcaggaggaggtcttcgtccctcaaggcaaatggatgcgttccaaacagcattggatgactgtactcttacagatttagggtttgagggcagtctattcacatggcataattcagagactcaatgtagattagaccgtgcagttgccacgcagggttggtgtcaagtgtatggactgaatagggtgctccaccttccgccctcttgttctgatcatgtcccgattcttgttgaagcacatattcaggctccaattcagtttccatcacgcagaaccagatttcggtttgaagagatgtggacgaaggatgattcttgtgaagaagtgatccgggagaagtggcagacggatagggagggtttcgagcagtttcggttgcaaggaaacctttatagcacgaggttgggtttactcaattggaagaggcaggtttttggtgcccacattttttgtcccttccctttgccgcgtctgaccttcctgaaagacgattgctacaagagagatttgatactttgctggagttggaggacactttttggaagcaaaggtcgaaaactacttggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

341

Amino Acids

39.47

Weight (kDa)

8.68

Isoelectric Point (pI)

56.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005205)

Species	Orthologous Gene IDs
malus_domestica	MD07G1185800.v1.1
rosa_chinensis	RchiOBHm_Chr1g0327941
rosa_laevigata	RLG00000018282
rosa_multiflora	Rmu_co8368975.1_g000001 Rmu_sc0002900.1_g000003 Rmu_sc0003410.1_g000003 Rmu_sc0009365.1_g000011 Rmu_sc0011124.1_g000001 Rmu_sc0011806.1_g000003 Rmu_sc0014304.1_g000001 Rmu_sc0026800.1_g000001 Rmu_ssc0000026.1_g000005
rosa_roxburghii	Rroxscaffold_1G00047290 Rroxscaffold_5G00349170 Rroxscaffold_7G00169450
rosa_rugosa	Rorug02G0307300
rosa_samantha	Rh1CG170200 Rh2BG294200 Rh2BG331900 Rh2CG478300 Rh2CG514100 Rh3DG332200 Rh4BG389200 Rh4CG173800 Rh5CG378500 Rh7AG370300 Rh7AG371300 Rh7BG367300 Rh7CG389100 Rh7CG389900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	85
Acc36I	ACCTGC	1 cut(s)	874
Acc65I	GGTACC	1 cut(s)	29
AccB1I	GGYRCC	2 cut(s)	29, 893
AccBSI	CCGCTC	1 cut(s)	354
AccII	CGCG	1 cut(s)	925
AciI	CCGC	5 cut(s)	145, 260, 352, 653, 923
AclWI	GGATC	1 cut(s)	778
AcsI	RAATTY	1 cut(s)	47
AcuI	CTGAAG	1 cut(s)	318
AcyI	GRCGYC	2 cut(s)	62, 82
AfaI	GTAC	2 cut(s)	31, 520
AfiI	CCNNNNNNNGG	1 cut(s)	738
AgsI	TTSAA	2 cut(s)	689, 746
AjnI	CCWGG	2 cut(s)	362, 394
AluBI	AGCT	2 cut(s)	344, 444
AluI	AGCT	2 cut(s)	344, 444
Alw21I	GWGCWC	1 cut(s)	645
Alw26I	GTCTC	3 cut(s)	73, 114, 566
AlwI	GGATC	1 cut(s)	778
Ama87I	CYCGRG	1 cut(s)	445
ApeKI	GCWGC	1 cut(s)	286
ApoI	RAATTY	1 cut(s)	47
Asp718I	GGTACC	1 cut(s)	29
AsuC2I	CCSGG	1 cut(s)	788
AsuHPI	GGTGA	2 cut(s)	249, 434
AsuII	TTCGAA	1 cut(s)	135
AvaI	CYCGRG	1 cut(s)	445
BaeGI	GKGCMC	1 cut(s)	898
BanI	GGYRCC	2 cut(s)	29, 893
BauI	CACGAG	1 cut(s)	853
BbsI	GAAGAC	1 cut(s)	461
Bbv12I	GWGCWC	1 cut(s)	645
BbvI	GCAGC	1 cut(s)	273
BccI	CCATC	2 cut(s)	303, 727
BciT130I	CCWGG	2 cut(s)	364, 396
BclI	TGATCA	2 cut(s)	102, 667
BcnI	CCSGG	1 cut(s)	788
BcoDI	GTCTC	3 cut(s)	73, 114, 566
BfaI	CTAG	1 cut(s)	87
BfuAI	ACCTGC	1 cut(s)	874
BisI	GCNGC	2 cut(s)	287, 923
BlsI	GCNGC	2 cut(s)	288, 924
Bme1390I	CCNGG	3 cut(s)	364, 396, 788
BmeT110I	CYCGRG	1 cut(s)	445
BmiI	GGNNCC	4 cut(s)	31, 143, 705, 895
BmrFI	CCNGG	3 cut(s)	364, 396, 788
BmsI	GCATC	4 cut(s)	201, 271, 343, 481
BpiI	GAAGAC	1 cut(s)	461
BpmI	CTGGAG	1 cut(s)	997
Bpu14I	TTCGAA	1 cut(s)	135
BpuEI	CTTGAG	1 cut(s)	463
BpuMI	CCSGG	1 cut(s)	788
BsaBI	GATNNNNATC	1 cut(s)	240
BsaHI	GRCGYC	2 cut(s)	62, 82
BsaJI	CCNNGG	1 cut(s)	363
BsaWI	WCCGGW	1 cut(s)	246
Bsc4I	CCNNNNNNNGG	1 cut(s)	738
Bse1I	ACTGG	1 cut(s)	413
Bse8I	GATNNNNATC	1 cut(s)	240
BseBI	CCWGG	2 cut(s)	364, 396
BseDI	CCNNGG	1 cut(s)	363
BseGI	GGATG	5 cut(s)	232, 334, 496, 517, 769
BseJI	GATNNNNATC	1 cut(s)	240
BseLI	CCNNNNNNNGG	1 cut(s)	738
BseNI	ACTGG	1 cut(s)	413
BseRI	GAGGAG	2 cut(s)	216, 477
BseSI	GKGCMC	1 cut(s)	898
BseXI	GCAGC	1 cut(s)	273
BsgI	GTGCAG	1 cut(s)	615
Bsh1236I	CGCG	1 cut(s)	925
Bsh1285I	CGRYCG	1 cut(s)	251
BshNI	GGYRCC	2 cut(s)	29, 893
BsiEI	CGRYCG	1 cut(s)	251
BsiHKAI	GWGCWC	1 cut(s)	645
BsiHKCI	CYCGRG	1 cut(s)	445
BsiSI	CCGG	3 cut(s)	247, 290, 787
BslFI	GGGAC	3 cut(s)	459, 659, 894
BslI	CCNNNNNNNGG	1 cut(s)	738
BsmAI	GTCTC	3 cut(s)	73, 114, 566
BsmBI	CGTCTC	1 cut(s)	73
BsmFI	GGGAC	3 cut(s)	459, 659, 894
BsmI	GAATGC	1 cut(s)	131
BsoBI	CYCGRG	1 cut(s)	445
Bsp119I	TTCGAA	1 cut(s)	135
Bsp1286I	GDGCHC	2 cut(s)	645, 898
Bsp143I	GATC	5 cut(s)	102, 235, 424, 667, 783
BspACI	CCGC	5 cut(s)	145, 260, 352, 653, 923
BspFNI	CGCG	1 cut(s)	925
BspLI	GGNNCC	4 cut(s)	31, 143, 705, 895
BspMI	ACCTGC	1 cut(s)	874
BspPI	GGATC	1 cut(s)	778
BspT104I	TTCGAA	1 cut(s)	135
BspT107I	GGYRCC	2 cut(s)	29, 893
BsrBI	CCGCTC	1 cut(s)	354
BsrI	ACTGG	1 cut(s)	413
BssECI	CCNNGG	1 cut(s)	363
BssMI	GATC	5 cut(s)	102, 235, 424, 667, 783
BssNI	GRCGYC	2 cut(s)	62, 82
BssSI	CACGAG	1 cut(s)	853
Bst2BI	CACGAG	1 cut(s)	853
Bst2UI	CCWGG	2 cut(s)	364, 396
Bst4CI	ACNGT	3 cut(s)	141, 518, 593
Bst6I	CTCTTC	2 cut(s)	741, 872
BstACI	GRCGYC	2 cut(s)	62, 82
BstBI	TTCGAA	1 cut(s)	135
BstC8I	GCNNGC	2 cut(s)	129, 384
BstDEI	CTNAG	1 cut(s)	42
BstF5I	GGATG	5 cut(s)	232, 334, 496, 517, 769
BstFNI	CGCG	1 cut(s)	925
BstKTI	GATC	5 cut(s)	105, 238, 427, 670, 786
BstMAI	GTCTC	3 cut(s)	73, 114, 566
BstMBI	GATC	5 cut(s)	102, 235, 424, 667, 783
BstMCI	CGRYCG	1 cut(s)	251
BstMWI	GCNNNNNNNGC	1 cut(s)	259
BstNI	CCWGG	2 cut(s)	364, 396
BstSCI	CCNGG	3 cut(s)	362, 394, 786
BstSLI	GKGCMC	1 cut(s)	898
BstUI	CGCG	1 cut(s)	925
BstV1I	GCAGC	1 cut(s)	273
BstV2I	GAAGAC	1 cut(s)	461
BtsCI	GGATG	5 cut(s)	232, 334, 496, 517, 769
BveI	ACCTGC	1 cut(s)	874
Cac8I	GCNNGC	2 cut(s)	129, 384
CseI	GACGC	4 cut(s)	51, 348, 365, 914
Csp6I	GTAC	2 cut(s)	30, 519
CspCI	CAANNNNNGTGG	2 cut(s)	887, 922
CviAII	CATG	5 cut(s)	15, 167, 391, 558, 671
CviJI	RGCY	4 cut(s)	56, 344, 444, 704
CviKI_1	RGCY	4 cut(s)	56, 344, 444, 704
CviQI	GTAC	2 cut(s)	30, 519
DdeI	CTNAG	1 cut(s)	42
DpnI	GATC	5 cut(s)	104, 237, 426, 669, 785
DpnII	GATC	5 cut(s)	102, 235, 424, 667, 783
Eam1104I	CTCTTC	2 cut(s)	741, 872
EarI	CTCTTC	2 cut(s)	741, 872
EciI	GGCGGA	1 cut(s)	642
Eco57I	CTGAAG	1 cut(s)	318
Eco88I	CYCGRG	1 cut(s)	445
EcoRII	CCWGG	2 cut(s)	362, 394
Esp3I	CGTCTC	1 cut(s)	73
FaeI	CATG	5 cut(s)	18, 170, 394, 561, 674
FalI	AAGNNNNNCTT	2 cut(s)	828, 860
FaqI	GGGAC	3 cut(s)	459, 659, 894
FatI	CATG	5 cut(s)	14, 166, 390, 557, 670
FbaI	TGATCA	2 cut(s)	102, 667
Fnu4HI	GCNGC	2 cut(s)	287, 923
FokI	GGATG	5 cut(s)	239, 321, 503, 524, 776
Fsp4HI	GCNGC	2 cut(s)	287, 923
FspBI	CTAG	1 cut(s)	87
GluI	GCNGC	2 cut(s)	287, 923
GsuI	CTGGAG	1 cut(s)	997
HapII	CCGG	3 cut(s)	247, 290, 787
HgaI	GACGC	4 cut(s)	51, 348, 365, 914
Hin1I	GRCGYC	2 cut(s)	62, 82
Hin1II	CATG	5 cut(s)	18, 170, 394, 561, 674
HinfI	GANTC	6 cut(s)	7, 293, 315, 574, 679, 767
HpaII	CCGG	3 cut(s)	247, 290, 787
HphI	GGTGA	2 cut(s)	249, 434
Hpy166II	GTNNAC	2 cut(s)	756, 866
Hpy188I	TCNGA	5 cut(s)	190, 298, 571, 667, 930
Hpy188III	TCNNGA	6 cut(s)	100, 106, 338, 459, 676, 937
Hpy8I	GTNNAC	2 cut(s)	756, 866
Hpy99I	CGWCG	1 cut(s)	67
HpyAV	CCTTC	6 cut(s)	293, 397, 659, 754, 922, 943
HpyCH4III	ACNGT	3 cut(s)	141, 518, 593
HpyCH4IV	ACGT	1 cut(s)	82
HpyCH4V	TGCA	3 cut(s)	178, 596, 835
HpyF10VI	GCNNNNNNNGC	1 cut(s)	259
HpyF3I	CTNAG	1 cut(s)	42
HpySE526I	ACGT	1 cut(s)	82
Hsp92I	GRCGYC	2 cut(s)	62, 82
Hsp92II	CATG	5 cut(s)	18, 170, 394, 561, 674
KpnI	GGTACC	1 cut(s)	33
Ksp22I	TGATCA	2 cut(s)	102, 667
Kzo9I	GATC	5 cut(s)	102, 235, 424, 667, 783
LmnI	GCTCC	2 cut(s)	648, 709
Lsp1109I	GCAGC	1 cut(s)	273
LweI	GCATC	4 cut(s)	201, 271, 343, 481
MaeI	CTAG	1 cut(s)	87
MaeII	ACGT	1 cut(s)	82
MalI	GATC	5 cut(s)	104, 237, 426, 669, 785
MbiI	CCGCTC	1 cut(s)	354
MboI	GATC	5 cut(s)	102, 235, 424, 667, 783
MboII	GAAGA	5 cut(s)	230, 461, 758, 788, 889
MfeI	CAATTG	1 cut(s)	871
MhlI	GDGCHC	2 cut(s)	645, 898
MluCI	AATT	5 cut(s)	47, 231, 565, 708, 871
MlyI	GAGTC	2 cut(s)	309, 568
MmeI	TCCRAC	1 cut(s)	962
MslI	CAYNNNNRTG	1 cut(s)	270
MspI	CCGG	3 cut(s)	247, 290, 787
MspR9I	CCNGG	3 cut(s)	364, 396, 788
MunI	CAATTG	1 cut(s)	871
Mva1269I	GAATGC	1 cut(s)	131
MvaI	CCWGG	2 cut(s)	364, 396
MvnI	CGCG	1 cut(s)	925
MwoI	GCNNNNNNNGC	1 cut(s)	259
NciI	CCSGG	1 cut(s)	788
NdeII	GATC	5 cut(s)	102, 235, 424, 667, 783
NlaIII	CATG	5 cut(s)	18, 170, 394, 561, 674
NlaIV	GGNNCC	4 cut(s)	31, 143, 705, 895
NspV	TTCGAA	1 cut(s)	135
PaeR7I	CTCGAG	1 cut(s)	445
PctI	GAATGC	1 cut(s)	131
PfeI	GAWTC	4 cut(s)	7, 293, 679, 767
PfoI	TCCNGGA	1 cut(s)	786
PkrI	GCNGC	2 cut(s)	288, 924
PleI	GAGTC	2 cut(s)	309, 568
PpsI	GAGTC	2 cut(s)	309, 568
Psp6I	CCWGG	2 cut(s)	362, 394
PspGI	CCWGG	2 cut(s)	362, 394
PspN4I	GGNNCC	4 cut(s)	31, 143, 705, 895
PspXI	VCTCGAGB	1 cut(s)	445
RsaI	GTAC	2 cut(s)	31, 520
RsaNI	GTAC	2 cut(s)	30, 519
RseI	CAYNNNNRTG	1 cut(s)	270
SatI	GCNGC	2 cut(s)	287, 923
Sau3AI	GATC	5 cut(s)	102, 235, 424, 667, 783
SchI	GAGTC	2 cut(s)	309, 568
ScrFI	CCNGG	3 cut(s)	364, 396, 788
SduI	GDGCHC	2 cut(s)	645, 898
SfaNI	GCATC	4 cut(s)	201, 271, 343, 481
Sfr274I	CTCGAG	1 cut(s)	445
SfuI	TTCGAA	1 cut(s)	135
SlaI	CTCGAG	1 cut(s)	445
SmiMI	CAYNNNNRTG	1 cut(s)	270
SmlI	CTYRAG	2 cut(s)	445, 478
SmoI	CTYRAG	2 cut(s)	445, 478
Sse9I	AATT	5 cut(s)	47, 231, 565, 708, 871
SsiI	CCGC	5 cut(s)	145, 260, 352, 653, 923
SspMI	CTAG	1 cut(s)	87
StyD4I	CCNGG	3 cut(s)	362, 394, 786
TaaI	ACNGT	3 cut(s)	141, 518, 593
TaiI	ACGT	1 cut(s)	85
TaqI	TCGA	5 cut(s)	65, 135, 446, 819, 1009
TasI	AATT	5 cut(s)	47, 231, 565, 708, 871
TatI	WGTACW	1 cut(s)	518
TauI	GCSGC	1 cut(s)	925
TfiI	GAWTC	4 cut(s)	7, 293, 679, 767
TseI	GCWGC	1 cut(s)	286
TspDTI	ATGAA	4 cut(s)	230, 243, 379, 447
TspGWI	ACGGA	2 cut(s)	152, 818
XapI	RAATTY	1 cut(s)	47
XhoI	CTCGAG	1 cut(s)	445
XspI	CTAG	1 cut(s)	87
ZraI	GACGTC	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.