Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0005205

Physical Location & Seq

Genomic Coordinates Forward (+)

21919130 .. 21923430

Gene Structure 4301 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00349170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGTGCGAATGCAGTCCTTCCACAAACTCAAAGCGCGTGCAGGAAGTTATAGTGGGAGCTCATCTGTGGCTTCAGAATTATTTAAAGGCTAATCGTCCTCCAATTCAGAGTTGTTGTCGAAGGTCTAGATGGATGAAACCGTTGCGAGGGTGGGTGAGTATTTGCATGGATGGTGCCTTTAATTCTCTTACTTGGGAGGGAGGTGTGGGGGCTAGAGATAGCAATGGGACATATTTAGGTGGACGGGCAAAATACCTCCAGGGGGTTTCTTCGGCTGAGCATGTTGAATTACTAGCGGGTTTTGAAGCCTTGGAGCTGGTGTGGGTGTTGGCCGGGTTTGCAGGCGGTGAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 zf-RVT

Protein Analysis

118

Amino Acids

12.93

Weight (kDa)

8.34

Isoelectric Point (pI)

56.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005205)

Species	Orthologous Gene IDs
malus_domestica	MD07G1185800.v1.1
rosa_chinensis	RchiOBHm_Chr1g0327941
rosa_laevigata	RLG00000018282
rosa_multiflora	Rmu_co8368975.1_g000001 Rmu_sc0002900.1_g000003 Rmu_sc0003410.1_g000003 Rmu_sc0009365.1_g000011 Rmu_sc0011124.1_g000001 Rmu_sc0011806.1_g000003 Rmu_sc0014304.1_g000001 Rmu_sc0026800.1_g000001 Rmu_ssc0000026.1_g000005
rosa_roxburghii	Rroxscaffold_1G00047290 Rroxscaffold_5G00349170 Rroxscaffold_7G00169450
rosa_rugosa	Rorug02G0307300
rosa_samantha	Rh1CG170200 Rh2BG294200 Rh2BG331900 Rh2CG478300 Rh2CG514100 Rh3DG332200 Rh4BG389200 Rh4CG173800 Rh5CG378500 Rh7AG370300 Rh7AG371300 Rh7BG367300 Rh7CG389100 Rh7CG389900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	173
AccII	CGCG	1 cut(s)	36
AciI	CCGC	2 cut(s)	296, 345
AcoI	YGGCCR	1 cut(s)	330
AcuI	CTGAAG	1 cut(s)	56
AfiI	CCNNNNNNNGG	2 cut(s)	146, 262
AgsI	TTSAA	2 cut(s)	287, 305
AjnI	CCWGG	1 cut(s)	258
AluBI	AGCT	2 cut(s)	59, 316
AluI	AGCT	2 cut(s)	59, 316
Alw21I	GWGCWC	1 cut(s)	61
AoxI	GGCC	1 cut(s)	330
AspLEI	GCGC	1 cut(s)	36
AsuC2I	CCSGG	1 cut(s)	334
AsuHPI	GGTGA	1 cut(s)	166
BanI	GGYRCC	1 cut(s)	173
BanII	GRGCYC	1 cut(s)	61
Bbv12I	GWGCWC	1 cut(s)	61
BccI	CCATC	2 cut(s)	123, 164
BciT130I	CCWGG	1 cut(s)	260
BcnI	CCSGG	1 cut(s)	334
BfaI	CTAG	3 cut(s)	126, 213, 293
BlpI	GCTNAGC	1 cut(s)	276
Bme1390I	CCNGG	2 cut(s)	260, 334
BmiI	GGNNCC	1 cut(s)	175
BmrFI	CCNGG	2 cut(s)	260, 334
BpmI	CTGGAG	1 cut(s)	242
Bpu1102I	GCTNAGC	1 cut(s)	276
BpuMI	CCSGG	1 cut(s)	334
BsaJI	CCNNGG	2 cut(s)	259, 309
BsaXI	ACNNNNNCTCC	2 cut(s)	305, 335
Bsc4I	CCNNNNNNNGG	2 cut(s)	146, 262
Bse3DI	GCAATG	1 cut(s)	229
BseBI	CCWGG	1 cut(s)	260
BseDI	CCNNGG	2 cut(s)	259, 309
BseGI	GGATG	2 cut(s)	138, 175
BseLI	CCNNNNNNNGG	2 cut(s)	146, 262
BseMI	GCAATG	1 cut(s)	229
BseMII	CTCAG	1 cut(s)	267
BsgI	GTGCAG	1 cut(s)	59
Bsh1236I	CGCG	1 cut(s)	36
BshFI	GGCC	1 cut(s)	332
BshNI	GGYRCC	1 cut(s)	173
BsiHKAI	GWGCWC	1 cut(s)	61
BsiSI	CCGG	1 cut(s)	333
BslFI	GGGAC	1 cut(s)	241
BslI	CCNNNNNNNGG	2 cut(s)	146, 262
BsmFI	GGGAC	1 cut(s)	241
BsmI	GAATGC	1 cut(s)	14
BsnI	GGCC	1 cut(s)	332
Bsp1286I	GDGCHC	1 cut(s)	61
Bsp1720I	GCTNAGC	1 cut(s)	276
BspACI	CCGC	2 cut(s)	296, 345
BspANI	GGCC	1 cut(s)	332
BspCNI	CTCAG	1 cut(s)	268
BspFNI	CGCG	1 cut(s)	36
BspLI	GGNNCC	1 cut(s)	175
BspT107I	GGYRCC	1 cut(s)	173
BsrDI	GCAATG	1 cut(s)	229
BssECI	CCNNGG	2 cut(s)	259, 309
BssT1I	CCWWGG	1 cut(s)	309
Bst2UI	CCWGG	1 cut(s)	260
Bst4CI	ACNGT	1 cut(s)	141
BstC8I	GCNNGC	2 cut(s)	38, 343
BstDEI	CTNAG	1 cut(s)	276
BstF5I	GGATG	2 cut(s)	138, 175
BstFNI	CGCG	1 cut(s)	36
BstHHI	GCGC	1 cut(s)	36
BstMWI	GCNNNNNNNGC	1 cut(s)	338
BstNI	CCWGG	1 cut(s)	260
BstNSI	RCATGY	1 cut(s)	284
BstSCI	CCNGG	2 cut(s)	258, 332
BstUI	CGCG	1 cut(s)	36
BsuRI	GGCC	1 cut(s)	332
BtsCI	GGATG	2 cut(s)	138, 175
Cac8I	GCNNGC	2 cut(s)	38, 343
CfoI	GCGC	1 cut(s)	36
CviAII	CATG	2 cut(s)	166, 281
CviJI	RGCY	8 cut(s)	59, 70, 89, 212, 275, 308, 316, 332
CviKI_1	RGCY	8 cut(s)	59, 70, 89, 212, 275, 308, 316, 332
DdeI	CTNAG	1 cut(s)	276
DraI	TTTAAA	1 cut(s)	84
EaeI	YGGCCR	1 cut(s)	330
Ecl136II	GAGCTC	1 cut(s)	59
Eco130I	CCWWGG	1 cut(s)	309
Eco24I	GRGCYC	1 cut(s)	61
Eco53kI	GAGCTC	1 cut(s)	59
Eco57I	CTGAAG	1 cut(s)	56
EcoICRI	GAGCTC	1 cut(s)	59
EcoRII	CCWGG	1 cut(s)	258
EcoT14I	CCWWGG	1 cut(s)	309
EcoT38I	GRGCYC	1 cut(s)	61
ErhI	CCWWGG	1 cut(s)	309
FaeI	CATG	2 cut(s)	169, 284
FaiI	YATR	4 cut(s)	50, 167, 232, 282
FaqI	GGGAC	1 cut(s)	241
FatI	CATG	2 cut(s)	165, 280
FauI	CCCGC	1 cut(s)	289
FokI	GGATG	2 cut(s)	145, 182
FriOI	GRGCYC	1 cut(s)	61
FspBI	CTAG	3 cut(s)	126, 213, 293
GlaI	GCGC	1 cut(s)	35
GsuI	CTGGAG	1 cut(s)	242
HaeIII	GGCC	1 cut(s)	332
HapII	CCGG	1 cut(s)	333
HhaI	GCGC	1 cut(s)	36
Hin1II	CATG	2 cut(s)	169, 284
Hin6I	GCGC	1 cut(s)	34
HinP1I	GCGC	1 cut(s)	34
HpaII	CCGG	1 cut(s)	333
HphI	GGTGA	1 cut(s)	166
Hpy166II	GTNNAC	1 cut(s)	242
Hpy188I	TCNGA	2 cut(s)	75, 108
Hpy188III	TCNNGA	1 cut(s)	126
Hpy8I	GTNNAC	1 cut(s)	242
HpyAV	CCTTC	2 cut(s)	27, 114
HpyCH4III	ACNGT	1 cut(s)	141
HpyCH4V	TGCA	4 cut(s)	12, 40, 165, 341
HpyF10VI	GCNNNNNNNGC	1 cut(s)	338
HpyF3I	CTNAG	1 cut(s)	276
Hsp92II	CATG	2 cut(s)	169, 284
HspAI	GCGC	1 cut(s)	34
LmnI	GCTCC	2 cut(s)	56, 313
LpnPI	CCDG	6 cut(s)	26, 245, 272, 302, 327, 346
MaeI	CTAG	3 cut(s)	126, 213, 293
MboII	GAAGA	1 cut(s)	261
MhlI	GDGCHC	1 cut(s)	61
MluCI	AATT	4 cut(s)	76, 102, 181, 287
MnlI	CCTC	5 cut(s)	108, 140, 190, 194, 266
MseI	TTAA	2 cut(s)	83, 180
MspI	CCGG	1 cut(s)	333
MspR9I	CCNGG	2 cut(s)	260, 334
Mva1269I	GAATGC	1 cut(s)	14
MvaI	CCWGG	1 cut(s)	260
MvnI	CGCG	1 cut(s)	36
MwoI	GCNNNNNNNGC	1 cut(s)	338
NciI	CCSGG	1 cut(s)	334
NlaIII	CATG	2 cut(s)	169, 284
NlaIV	GGNNCC	1 cut(s)	175
NspI	RCATGY	1 cut(s)	284
PctI	GAATGC	1 cut(s)	14
Psp124BI	GAGCTC	1 cut(s)	61
Psp6I	CCWGG	1 cut(s)	258
PspGI	CCWGG	1 cut(s)	258
PspN4I	GGNNCC	1 cut(s)	175
SacI	GAGCTC	1 cut(s)	61
SaqAI	TTAA	2 cut(s)	83, 180
ScrFI	CCNGG	2 cut(s)	260, 334
SduI	GDGCHC	1 cut(s)	61
SetI	ASST	6 cut(s)	61, 125, 205, 241, 258, 318
Sse9I	AATT	4 cut(s)	76, 102, 181, 287
SsiI	CCGC	2 cut(s)	296, 345
SspMI	CTAG	3 cut(s)	126, 213, 293
SstI	GAGCTC	1 cut(s)	61
StyD4I	CCNGG	2 cut(s)	258, 332
StyI	CCWWGG	1 cut(s)	309
TaaI	ACNGT	1 cut(s)	141
TaqI	TCGA	1 cut(s)	118
TasI	AATT	4 cut(s)	76, 102, 181, 287
Tru1I	TTAA	2 cut(s)	83, 180
Tru9I	TTAA	2 cut(s)	83, 180
TspDTI	ATGAA	1 cut(s)	149
XbaI	TCTAGA	1 cut(s)	125
XceI	RCATGY	1 cut(s)	284
XspI	CTAG	3 cut(s)	126, 213, 293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.