Rmu_sc0002900.1_g000003

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002900.1
OG0005205
Physical Location & Seq
Forward (+)
11767 .. 12468
702 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002900.1_g000003.1.cds

Sequence Viewer

Length: 600 bp
atgcaagagtgttctgaaacgggtggaggaggattgatgctattgtgggtggatgagattgatcttcatctccggtcgcactcagcgcatcacattgatgcagatgtcgtgctaccggaatctgagggagggagatggcgtctcacaggtttttatgggcatctagatgctcatctactctctgtgtcatgggatttgttacgtctgcttgccttcatgccagattctcctaactggttggtggttggtgatctaaatgaaatcatcagctcgagggagaaatcaggaggaggtcttcgtccctcaagacaaatatatgcgttccaaacagtgttggatgactgtgctcttacagatttaggggtgctccatcttccgccttcttgttctgatcatgtcccgattcttgttgaagcacatattcaggctccaattccgtttccatcacgcataaccagatttcggtttgaagagatgtggacaaaagatgattcttgtgaagaagtgatccgggagcagtggcagacagatagggatggtttcgagcagtttcctttgcagggaaaactttatagcacgaagttgggtttactcaactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

199

Amino Acids

22.52

Weight (kDa)

4.9

Isoelectric Point (pI)

64.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 377
AclWI GGATC 1 cut(s) 502
AcyI GRCGYC 1 cut(s) 139
AfiI CCNNNNNNNGG 2 cut(s) 462, 560
AgsI TTSAA 2 cut(s) 413, 470
AluBI AGCT 1 cut(s) 270
AluI AGCT 1 cut(s) 270
Alw21I GWGCWC 2 cut(s) 349, 369
Alw26I GTCTC 1 cut(s) 146
AlwI GGATC 1 cut(s) 502
Ama87I CYCGRG 1 cut(s) 271
AspLEI GCGC 1 cut(s) 88
AsuC2I CCSGG 1 cut(s) 512
AsuHPI GGTGA 1 cut(s) 260
AvaI CYCGRG 1 cut(s) 271
BbsI GAAGAC 1 cut(s) 287
Bbv12I GWGCWC 2 cut(s) 349, 369
BccI CCATC 4 cut(s) 129, 378, 451, 530
BclI TGATCA 1 cut(s) 391
BcnI CCSGG 1 cut(s) 512
BcoDI GTCTC 1 cut(s) 146
BfaI CTAG 2 cut(s) 164, 598
Bme1390I CCNGG 1 cut(s) 512
BmeT110I CYCGRG 1 cut(s) 271
BmiI GGNNCC 1 cut(s) 429
BmrFI CCNGG 1 cut(s) 512
BmsI GCATC 5 cut(s) 27, 88, 97, 157, 169
BpiI GAAGAC 1 cut(s) 287
BpuEI CTTGAG 1 cut(s) 289
BpuMI CCSGG 1 cut(s) 512
BsaBI GATNNNNATC 2 cut(s) 66, 171
BsaHI GRCGYC 1 cut(s) 139
BsaWI WCCGGW 2 cut(s) 72, 115
BsaXI ACNNNNNCTCC 2 cut(s) 124, 154
Bsc4I CCNNNNNNNGG 2 cut(s) 462, 560
Bse1I ACTGG 1 cut(s) 239
Bse8I GATNNNNATC 2 cut(s) 66, 171
BseGI GGATG 3 cut(s) 58, 343, 541
BseJI GATNNNNATC 2 cut(s) 66, 171
BseLI CCNNNNNNNGG 2 cut(s) 462, 560
BseMII CTCAG 2 cut(s) 96, 114
BseNI ACTGG 1 cut(s) 239
BseRI GAGGAG 2 cut(s) 42, 303
Bsh1285I CGRYCG 1 cut(s) 77
BsiEI CGRYCG 1 cut(s) 77
BsiHKAI GWGCWC 2 cut(s) 349, 369
BsiHKCI CYCGRG 1 cut(s) 271
BsiSI CCGG 3 cut(s) 73, 116, 511
BslFI GGGAC 2 cut(s) 285, 383
BslI CCNNNNNNNGG 2 cut(s) 462, 560
BsmAI GTCTC 1 cut(s) 146
BsmBI CGTCTC 1 cut(s) 146
BsmFI GGGAC 2 cut(s) 285, 383
BsoBI CYCGRG 1 cut(s) 271
Bsp1286I GDGCHC 2 cut(s) 349, 369
Bsp143I GATC 4 cut(s) 61, 250, 391, 507
BspACI CCGC 1 cut(s) 377
BspCNI CTCAG 2 cut(s) 95, 115
BspLI GGNNCC 1 cut(s) 429
BspPI GGATC 1 cut(s) 502
BsrI ACTGG 1 cut(s) 239
BssMI GATC 4 cut(s) 61, 250, 391, 507
BssNI GRCGYC 1 cut(s) 139
Bst4CI ACNGT 2 cut(s) 331, 344
Bst6I CTCTTC 1 cut(s) 465
BstACI GRCGYC 1 cut(s) 139
BstC8I GCNNGC 1 cut(s) 210
BstDEI CTNAG 2 cut(s) 82, 123
BstF5I GGATG 3 cut(s) 58, 343, 541
BstHHI GCGC 1 cut(s) 88
BstKTI GATC 4 cut(s) 64, 253, 394, 510
BstMAI GTCTC 1 cut(s) 146
BstMBI GATC 4 cut(s) 61, 250, 391, 507
BstMCI CGRYCG 1 cut(s) 77
BstMWI GCNNNNNNNGC 1 cut(s) 85
BstSCI CCNGG 1 cut(s) 510
BstV2I GAAGAC 1 cut(s) 287
BtsCI GGATG 3 cut(s) 58, 343, 541
BtsI GCAGTG 1 cut(s) 524
BtsIMutI CAGTG 2 cut(s) 336, 524
Cac8I GCNNGC 1 cut(s) 210
CfoI GCGC 1 cut(s) 88
CseI GACGC 1 cut(s) 128
CviAII CATG 3 cut(s) 189, 217, 395
CviJI RGCY 2 cut(s) 270, 428
CviKI_1 RGCY 2 cut(s) 270, 428
DdeI CTNAG 2 cut(s) 82, 123
DpnI GATC 4 cut(s) 63, 252, 393, 509
DpnII GATC 4 cut(s) 61, 250, 391, 507
Eam1104I CTCTTC 1 cut(s) 465
EarI CTCTTC 1 cut(s) 465
EciI GGCGGA 1 cut(s) 366
Eco88I CYCGRG 1 cut(s) 271
Esp3I CGTCTC 1 cut(s) 146
FaeI CATG 3 cut(s) 192, 220, 398
FaiI YATR 9 cut(s) 156, 190, 218, 316, 318, 396, 420, 452, 573
FaqI GGGAC 2 cut(s) 285, 383
FatI CATG 3 cut(s) 188, 216, 394
FbaI TGATCA 1 cut(s) 391
FokI GGATG 3 cut(s) 65, 350, 548
FspBI CTAG 2 cut(s) 164, 598
GlaI GCGC 1 cut(s) 87
HapII CCGG 3 cut(s) 73, 116, 511
HgaI GACGC 1 cut(s) 128
HhaI GCGC 1 cut(s) 88
Hin1I GRCGYC 1 cut(s) 139
Hin1II CATG 3 cut(s) 192, 220, 398
Hin6I GCGC 1 cut(s) 86
HinP1I GCGC 1 cut(s) 86
HinfI GANTC 4 cut(s) 119, 224, 403, 491
HpaII CCGG 3 cut(s) 73, 116, 511
HphI GGTGA 1 cut(s) 260
Hpy166II GTNNAC 2 cut(s) 480, 590
Hpy188I TCNGA 3 cut(s) 16, 124, 391
Hpy188III TCNNGA 4 cut(s) 164, 285, 306, 400
Hpy8I GTNNAC 2 cut(s) 480, 590
HpyAV CCTTC 2 cut(s) 223, 390
HpyCH4III ACNGT 2 cut(s) 331, 344
HpyCH4IV ACGT 1 cut(s) 202
HpyCH4V TGCA 3 cut(s) 4, 101, 559
HpyF10VI GCNNNNNNNGC 1 cut(s) 85
HpyF3I CTNAG 2 cut(s) 82, 123
HpySE526I ACGT 1 cut(s) 202
Hsp92I GRCGYC 1 cut(s) 139
Hsp92II CATG 3 cut(s) 192, 220, 398
HspAI GCGC 1 cut(s) 86
Ksp22I TGATCA 1 cut(s) 391
Kzo9I GATC 4 cut(s) 61, 250, 391, 507
LmnI GCTCC 3 cut(s) 372, 433, 514
LweI GCATC 5 cut(s) 27, 88, 97, 157, 169
MaeI CTAG 2 cut(s) 164, 598
MaeII ACGT 1 cut(s) 202
MaeIII GTNAC 1 cut(s) 198
MalI GATC 4 cut(s) 63, 252, 393, 509
MboI GATC 4 cut(s) 61, 250, 391, 507
MboII GAAGA 5 cut(s) 56, 287, 365, 482, 512
MhlI GDGCHC 2 cut(s) 349, 369
MluCI AATT 1 cut(s) 432
MmeI TCCRAC 1 cut(s) 315
MnlI CCTC 8 cut(s) 20, 23, 118, 122, 267, 281, 284, 313
MslI CAYNNNNRTG 2 cut(s) 96, 165
MspI CCGG 3 cut(s) 73, 116, 511
MspR9I CCNGG 1 cut(s) 512
MwoI GCNNNNNNNGC 1 cut(s) 85
NciI CCSGG 1 cut(s) 512
NdeII GATC 4 cut(s) 61, 250, 391, 507
NlaIII CATG 3 cut(s) 192, 220, 398
NlaIV GGNNCC 1 cut(s) 429
PaeR7I CTCGAG 1 cut(s) 271
PfeI GAWTC 4 cut(s) 119, 224, 403, 491
PfoI TCCNGGA 1 cut(s) 510
PspN4I GGNNCC 1 cut(s) 429
PspXI VCTCGAGB 1 cut(s) 271
RseI CAYNNNNRTG 2 cut(s) 96, 165
Sau3AI GATC 4 cut(s) 61, 250, 391, 507
ScrFI CCNGG 1 cut(s) 512
SduI GDGCHC 2 cut(s) 349, 369
SetI ASST 4 cut(s) 151, 205, 272, 295
SfaNI GCATC 5 cut(s) 27, 88, 97, 157, 169
Sfr274I CTCGAG 1 cut(s) 271
SlaI CTCGAG 1 cut(s) 271
SmiMI CAYNNNNRTG 2 cut(s) 96, 165
SmlI CTYRAG 2 cut(s) 271, 304
SmoI CTYRAG 2 cut(s) 271, 304
Sse9I AATT 1 cut(s) 432
SsiI CCGC 1 cut(s) 377
SspMI CTAG 2 cut(s) 164, 598
StyD4I CCNGG 1 cut(s) 510
TaaI ACNGT 2 cut(s) 331, 344
TaiI ACGT 1 cut(s) 205
TaqI TCGA 2 cut(s) 272, 543
TasI AATT 1 cut(s) 432
TfiI GAWTC 4 cut(s) 119, 224, 403, 491
TscAI CASTG 2 cut(s) 336, 524
TspDTI ATGAA 3 cut(s) 56, 205, 273
TspGWI ACGGA 1 cut(s) 426
TspRI CASTG 2 cut(s) 336, 524
XbaI TCTAGA 1 cut(s) 163
XhoI CTCGAG 1 cut(s) 271
XspI CTAG 2 cut(s) 164, 598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.