Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0005205

Physical Location & Seq

Genomic Coordinates Reverse (-)

43829595 .. 43831332

Gene Structure 1738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG331900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGCTGCTAACAACTTTCCAGTGGGTTTGGATAAGGAACAGAGAAGGAGATGGAATACAGGGTTGAATTGTTCAACAATAGCACTCAGCTTGATTCCGGAATCGACCTGCGCCTCTGACTCCAATCTGAATCGCGCCGGCGGCGACGATGCGCTCACCATTCACGAAGACGACGGCGACGGATCTAGCTTGAATCTCCGAAGCAGTAGCACTGCAAAAAAATCTCCAGTAGCACTCAAATTGATTCCGGAATCGACCTTCGCCTCTTATTCTAATCTGAATCGCGCCGGCGACGACGATGCGCTCACCATTCACGAAGACGACGGCGACGATCTGATGGGCTTCGTGACCGTGAATTCCGAAAACGTTAAGGATTGTGCCGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

128

Amino Acids

13.62

Weight (kDa)

4.39

Isoelectric Point (pI)

53.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005205)

Species	Orthologous Gene IDs
malus_domestica	MD07G1185800.v1.1
rosa_chinensis	RchiOBHm_Chr1g0327941
rosa_laevigata	RLG00000018282
rosa_multiflora	Rmu_co8368975.1_g000001 Rmu_sc0002900.1_g000003 Rmu_sc0003410.1_g000003 Rmu_sc0009365.1_g000011 Rmu_sc0011124.1_g000001 Rmu_sc0011806.1_g000003 Rmu_sc0014304.1_g000001 Rmu_sc0026800.1_g000001 Rmu_ssc0000026.1_g000005
rosa_roxburghii	Rroxscaffold_1G00047290 Rroxscaffold_5G00349170 Rroxscaffold_7G00169450
rosa_rugosa	Rorug02G0307300
rosa_samantha	Rh1CG170200 Rh2BG294200 Rh2BG331900 Rh2CG478300 Rh2CG514100 Rh3DG332200 Rh4BG389200 Rh4CG173800 Rh5CG378500 Rh7AG370300 Rh7AG371300 Rh7BG367300 Rh7CG389100 Rh7CG389900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	116
AccII	CGCG	2 cut(s)	135, 285
AccIII	TCCGGA	2 cut(s)	97, 247
AciI	CCGC	1 cut(s)	141
AclI	AACGTT	1 cut(s)	366
AclWI	GGATC	1 cut(s)	190
AcsI	RAATTY	1 cut(s)	355
AgsI	TTSAA	3 cut(s)	67, 75, 193
AluBI	AGCT	2 cut(s)	90, 189
AluI	AGCT	2 cut(s)	90, 189
AlwI	GGATC	1 cut(s)	190
Aor13HI	TCCGGA	2 cut(s)	97, 247
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	1 cut(s)	355
AspLEI	GCGC	5 cut(s)	113, 137, 154, 287, 304
AsuHPI	GGTGA	2 cut(s)	148, 298
BbsI	GAAGAC	2 cut(s)	174, 324
BccI	CCATC	2 cut(s)	45, 331
BceAI	ACGGC	3 cut(s)	190, 340, 365
BcgI	CGANNNNNNTGC	2 cut(s)	281, 315
BfaI	CTAG	1 cut(s)	186
BfuAI	ACCTGC	1 cut(s)	116
BisI	GCNGC	2 cut(s)	6, 142
BlsI	GCNGC	2 cut(s)	7, 143
BmsI	GCATC	2 cut(s)	139, 289
BpiI	GAAGAC	2 cut(s)	174, 324
BpmI	CTGGAG	1 cut(s)	210
BsaWI	WCCGGW	2 cut(s)	97, 247
Bse118I	RCCGGY	2 cut(s)	137, 287
Bse1I	ACTGG	2 cut(s)	20, 227
BseAI	TCCGGA	2 cut(s)	97, 247
BseMII	CTCAG	1 cut(s)	100
BseNI	ACTGG	2 cut(s)	20, 227
Bsh1236I	CGCG	2 cut(s)	135, 285
BsiSI	CCGG	4 cut(s)	98, 138, 248, 288
Bsp13I	TCCGGA	2 cut(s)	97, 247
Bsp143I	GATC	2 cut(s)	182, 331
BspACI	CCGC	1 cut(s)	141
BspCNI	CTCAG	1 cut(s)	99
BspEI	TCCGGA	2 cut(s)	97, 247
BspFNI	CGCG	2 cut(s)	135, 285
BspMI	ACCTGC	1 cut(s)	116
BspPI	GGATC	1 cut(s)	190
BsrFI	RCCGGY	2 cut(s)	137, 287
BsrI	ACTGG	2 cut(s)	20, 227
BssAI	RCCGGY	2 cut(s)	137, 287
BssMI	GATC	2 cut(s)	182, 331
Bst4CI	ACNGT	1 cut(s)	352
BstC8I	GCNNGC	2 cut(s)	139, 289
BstDEI	CTNAG	1 cut(s)	86
BstFNI	CGCG	2 cut(s)	135, 285
BstHHI	GCGC	5 cut(s)	113, 137, 154, 287, 304
BstKTI	GATC	2 cut(s)	185, 334
BstMBI	GATC	2 cut(s)	182, 331
BstMWI	GCNNNNNNNGC	1 cut(s)	141
BstUI	CGCG	2 cut(s)	135, 285
BstV2I	GAAGAC	2 cut(s)	174, 324
BstX2I	RGATCY	1 cut(s)	182
BstYI	RGATCY	1 cut(s)	182
BtsI	GCAGTG	1 cut(s)	210
BtsIMutI	CAGTG	2 cut(s)	27, 210
BveI	ACCTGC	1 cut(s)	116
Cac8I	GCNNGC	2 cut(s)	139, 289
CfoI	GCGC	5 cut(s)	113, 137, 154, 287, 304
Cfr10I	RCCGGY	2 cut(s)	137, 287
CviJI	RGCY	4 cut(s)	5, 90, 189, 342
CviKI_1	RGCY	4 cut(s)	5, 90, 189, 342
DdeI	CTNAG	1 cut(s)	86
DpnI	GATC	2 cut(s)	184, 333
DpnII	GATC	2 cut(s)	182, 331
EcoRI	GAATTC	1 cut(s)	355
Fnu4HI	GCNGC	2 cut(s)	6, 142
Fsp4HI	GCNGC	2 cut(s)	6, 142
FspBI	CTAG	1 cut(s)	186
GlaI	GCGC	5 cut(s)	112, 136, 153, 286, 303
GluI	GCNGC	2 cut(s)	6, 142
GsuI	CTGGAG	1 cut(s)	210
HapII	CCGG	4 cut(s)	98, 138, 248, 288
HhaI	GCGC	5 cut(s)	113, 137, 154, 287, 304
Hin6I	GCGC	5 cut(s)	111, 135, 152, 285, 302
HinP1I	GCGC	5 cut(s)	111, 135, 152, 285, 302
HinfI	GANTC	8 cut(s)	94, 101, 119, 130, 193, 244, 251, 280
HpaII	CCGG	4 cut(s)	98, 138, 248, 288
HphI	GGTGA	2 cut(s)	148, 298
Hpy188I	TCNGA	6 cut(s)	118, 129, 200, 279, 336, 361
Hpy188III	TCNNGA	5 cut(s)	98, 164, 248, 314, 346
Hpy99I	CGWCG	7 cut(s)	149, 176, 182, 296, 299, 326, 332
HpyAV	CCTTC	2 cut(s)	39, 268
HpyCH4III	ACNGT	1 cut(s)	352
HpyCH4IV	ACGT	1 cut(s)	366
HpyCH4V	TGCA	1 cut(s)	215
HpyF10VI	GCNNNNNNNGC	1 cut(s)	141
HpyF3I	CTNAG	1 cut(s)	86
HpySE526I	ACGT	1 cut(s)	366
HspAI	GCGC	5 cut(s)	111, 135, 152, 285, 302
Kpn2I	TCCGGA	2 cut(s)	97, 247
KroI	GCCGGC	2 cut(s)	137, 287
KroNI	GCCGGC	2 cut(s)	139, 289
Kzo9I	GATC	2 cut(s)	182, 331
LpnPI	CCDG	8 cut(s)	33, 45, 111, 121, 151, 240, 261, 301
LweI	GCATC	2 cut(s)	139, 289
MaeI	CTAG	1 cut(s)	186
MaeII	ACGT	1 cut(s)	366
MaeIII	GTNAC	1 cut(s)	346
MalI	GATC	2 cut(s)	184, 333
MboI	GATC	2 cut(s)	182, 331
MboII	GAAGA	2 cut(s)	179, 329
MflI	RGATCY	1 cut(s)	182
MluCI	AATT	3 cut(s)	67, 239, 355
MlyI	GAGTC	1 cut(s)	113
MnlI	CCTC	2 cut(s)	124, 274
MreI	CGCCGGCG	2 cut(s)	137, 287
MroI	TCCGGA	2 cut(s)	97, 247
MroNI	GCCGGC	2 cut(s)	137, 287
MseI	TTAA	1 cut(s)	369
MspI	CCGG	4 cut(s)	98, 138, 248, 288
MvnI	CGCG	2 cut(s)	135, 285
MwoI	GCNNNNNNNGC	1 cut(s)	141
NaeI	GCCGGC	2 cut(s)	139, 289
NdeII	GATC	2 cut(s)	182, 331
NgoMIV	GCCGGC	2 cut(s)	137, 287
NmuCI	GTSAC	1 cut(s)	346
PcsI	WCGNNNNNNNCGW	1 cut(s)	327
PdiI	GCCGGC	2 cut(s)	139, 289
PfeI	GAWTC	7 cut(s)	94, 101, 130, 193, 244, 251, 280
PkrI	GCNGC	2 cut(s)	7, 143
PleI	GAGTC	1 cut(s)	113
PpsI	GAGTC	1 cut(s)	113
Psp1406I	AACGTT	1 cut(s)	366
PsuI	RGATCY	1 cut(s)	182
SaqAI	TTAA	1 cut(s)	369
SatI	GCNGC	2 cut(s)	6, 142
Sau3AI	GATC	2 cut(s)	182, 331
SchI	GAGTC	1 cut(s)	113
SetI	ASST	5 cut(s)	92, 110, 191, 260, 369
SfaNI	GCATC	2 cut(s)	139, 289
SgrAI	CRCCGGYG	2 cut(s)	137, 287
Sse9I	AATT	3 cut(s)	67, 239, 355
SsiI	CCGC	1 cut(s)	141
SspMI	CTAG	1 cut(s)	186
TaaI	ACNGT	1 cut(s)	352
TaiI	ACGT	1 cut(s)	369
TaqI	TCGA	2 cut(s)	104, 254
TasI	AATT	3 cut(s)	67, 239, 355
TauI	GCSGC	1 cut(s)	144
TfiI	GAWTC	7 cut(s)	94, 101, 130, 193, 244, 251, 280
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TscAI	CASTG	2 cut(s)	27, 217
TseFI	GTSAC	1 cut(s)	346
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	1 cut(s)	346
TspGWI	ACGGA	1 cut(s)	195
TspRI	CASTG	2 cut(s)	27, 217
XapI	RAATTY	1 cut(s)	355
XspI	CTAG	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.