Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014304.1

Orthogroup ID

OG0005205

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2914

Gene Structure 2914 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014304.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

aaaaccctagtctgggtcttcccagaaaacctctatcgggcatccgcccgttgcactgtgcggcaccgggtctccggcggtcgctgttctaactcggaggcgcaagctctccgagcacccaatcctcctagtgagagggggttagaggagttcgatcagtgtttccttgctcagtttactggtttgggaatggagattctatcatggaatatcaggggtaccaaagaccctaagaaattcagggctttggcgtctattattcagcagagacgtcctagtattgtgttcttgatcgagacaaagtgtagagacaagcaagcattcgaacggttccgcaacgatttgggtttccgtcatggcataatgcaagagtgttctgatacgggtggaggaggtttgatgctattgtggggggatgaaattgatcttcatctccggtcgcactcaccgcatcacattgatgtagatgttgtgctgccggaatctgaaggagggagatggcgactcacaggtttttatgggcatccagaagctcatctccgctctgcgtcctgggatttgttgcgtctgcttgccttcatgccaggttctcctaactggttggtggttggtgatctaaatgaaatcatcagctcgagggagaaatcaggaggaggtcttcgtcccccaaggcaaatggatgcgttccaaacaccaagagagtctaagagacaatctgtgaagtggacacaagagacttcggtgaaggttagttctgatggtgccttccagccgacaacaaaaaagggaggtgctggggttgtgatccgagatgctaatagtgactttcaagttgatgctactaggcctattcctttggtaacgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-RVT

Protein Analysis

288

Amino Acids

32.29

Weight (kDa)

9.2

Isoelectric Point (pI)

54.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005205)

Species	Orthologous Gene IDs
malus_domestica	MD07G1185800.v1.1
rosa_chinensis	RchiOBHm_Chr1g0327941
rosa_laevigata	RLG00000018282
rosa_multiflora	Rmu_co8368975.1_g000001 Rmu_sc0002900.1_g000003 Rmu_sc0003410.1_g000003 Rmu_sc0009365.1_g000011 Rmu_sc0011124.1_g000001 Rmu_sc0011806.1_g000003 Rmu_sc0014304.1_g000001 Rmu_sc0026800.1_g000001 Rmu_ssc0000026.1_g000005
rosa_roxburghii	Rroxscaffold_1G00047290 Rroxscaffold_5G00349170 Rroxscaffold_7G00169450
rosa_rugosa	Rorug02G0307300
rosa_samantha	Rh1CG170200 Rh2BG294200 Rh2BG331900 Rh2CG478300 Rh2CG514100 Rh3DG332200 Rh4BG389200 Rh4CG173800 Rh5CG378500 Rh7AG370300 Rh7AG371300 Rh7BG367300 Rh7CG389100 Rh7CG389900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	274
Acc65I	GGTACC	1 cut(s)	218
AccB1I	GGYRCC	3 cut(s)	63, 218, 761
AccBSI	CCGCTC	1 cut(s)	543
AciI	CCGC	6 cut(s)	45, 61, 78, 334, 449, 541
AclWI	GGATC	1 cut(s)	799
AcsI	RAATTY	1 cut(s)	236
AcuI	CTGAAG	1 cut(s)	507
AcyI	GRCGYC	2 cut(s)	251, 271
AfaI	GTAC	1 cut(s)	220
AfiI	CCNNNNNNNGG	3 cut(s)	12, 13, 37
AgsI	TTSAA	1 cut(s)	830
AjnI	CCWGG	2 cut(s)	551, 583
AluBI	AGCT	3 cut(s)	107, 533, 633
AluI	AGCT	3 cut(s)	107, 533, 633
Alw21I	GWGCWC	1 cut(s)	118
Alw26I	GTCTC	6 cut(s)	76, 262, 290, 303, 703, 728
AlwI	GGATC	1 cut(s)	799
Ama87I	CYCGRG	1 cut(s)	634
AoxI	GGCC	1 cut(s)	845
ApeKI	GCWGC	1 cut(s)	475
ApoI	RAATTY	1 cut(s)	236
Asp718I	GGTACC	1 cut(s)	218
AspLEI	GCGC	1 cut(s)	103
AsuC2I	CCSGG	1 cut(s)	68
AsuHPI	GGTGA	3 cut(s)	438, 623, 754
AsuII	TTCGAA	1 cut(s)	324
AvaI	CYCGRG	1 cut(s)	634
BanI	GGYRCC	3 cut(s)	63, 218, 761
BbsI	GAAGAC	2 cut(s)	10, 650
Bbv12I	GWGCWC	1 cut(s)	118
BbvI	GCAGC	1 cut(s)	462
BccI	CCATC	2 cut(s)	492, 752
BciT130I	CCWGG	2 cut(s)	553, 585
BcnI	CCSGG	1 cut(s)	68
BcoDI	GTCTC	6 cut(s)	76, 262, 290, 303, 703, 728
BfaI	CTAG	4 cut(s)	8, 129, 276, 843
BisI	GCNGC	2 cut(s)	62, 476
BlsI	GCNGC	2 cut(s)	63, 477
Bme1390I	CCNGG	3 cut(s)	68, 553, 585
BmeT110I	CYCGRG	1 cut(s)	634
BmiI	GGNNCC	4 cut(s)	65, 220, 332, 763
BmrFI	CCNGG	3 cut(s)	68, 553, 585
BmsI	GCATC	7 cut(s)	50, 390, 460, 532, 670, 802, 826
BpiI	GAAGAC	2 cut(s)	10, 650
Bpu14I	TTCGAA	1 cut(s)	324
BpuMI	CCSGG	1 cut(s)	68
BsaBI	GATNNNNATC	1 cut(s)	429
BsaHI	GRCGYC	2 cut(s)	251, 271
BsaI	GGTCTC	1 cut(s)	76
BsaJI	CCNNGG	2 cut(s)	552, 668
BsaWI	WCCGGW	1 cut(s)	435
BsaXI	ACNNNNNCTCC	2 cut(s)	56, 86
Bsc4I	CCNNNNNNNGG	3 cut(s)	12, 13, 37
Bse1I	ACTGG	2 cut(s)	184, 602
Bse8I	GATNNNNATC	1 cut(s)	429
BseBI	CCWGG	2 cut(s)	553, 585
BseDI	CCNNGG	2 cut(s)	552, 668
BseGI	GGATG	4 cut(s)	41, 421, 523, 685
BseJI	GATNNNNATC	1 cut(s)	429
BseLI	CCNNNNNNNGG	3 cut(s)	12, 13, 37
BseMII	CTCAG	1 cut(s)	185
BseNI	ACTGG	2 cut(s)	184, 602
BseRI	GAGGAG	3 cut(s)	161, 405, 666
BseXI	GCAGC	1 cut(s)	462
BseYI	CCCAGC	1 cut(s)	794
Bsh1285I	CGRYCG	2 cut(s)	82, 440
BshFI	GGCC	1 cut(s)	847
BshNI	GGYRCC	3 cut(s)	63, 218, 761
BsiEI	CGRYCG	2 cut(s)	82, 440
BsiHKAI	GWGCWC	1 cut(s)	118
BsiHKCI	CYCGRG	1 cut(s)	634
BsiSI	CCGG	4 cut(s)	67, 75, 436, 479
BslFI	GGGAC	1 cut(s)	648
BslI	CCNNNNNNNGG	3 cut(s)	12, 13, 37
BsmAI	GTCTC	6 cut(s)	76, 262, 290, 303, 703, 728
BsmBI	CGTCTC	1 cut(s)	262
BsmFI	GGGAC	1 cut(s)	648
BsmI	GAATGC	1 cut(s)	320
BsnI	GGCC	1 cut(s)	847
Bso31I	GGTCTC	1 cut(s)	76
BsoBI	CYCGRG	1 cut(s)	634
Bsp119I	TTCGAA	1 cut(s)	324
Bsp1286I	GDGCHC	1 cut(s)	118
Bsp143I	GATC	5 cut(s)	154, 291, 424, 613, 804
BspACI	CCGC	6 cut(s)	45, 61, 78, 334, 449, 541
BspANI	GGCC	1 cut(s)	847
BspCNI	CTCAG	1 cut(s)	184
BspLI	GGNNCC	4 cut(s)	65, 220, 332, 763
BspPI	GGATC	1 cut(s)	799
BspT104I	TTCGAA	1 cut(s)	324
BspT107I	GGYRCC	3 cut(s)	63, 218, 761
BspTNI	GGTCTC	1 cut(s)	76
BsrBI	CCGCTC	1 cut(s)	543
BsrI	ACTGG	2 cut(s)	184, 602
BssECI	CCNNGG	2 cut(s)	552, 668
BssMI	GATC	5 cut(s)	154, 291, 424, 613, 804
BssNI	GRCGYC	2 cut(s)	251, 271
BssT1I	CCWWGG	1 cut(s)	668
Bst2UI	CCWGG	2 cut(s)	553, 585
Bst4CI	ACNGT	2 cut(s)	58, 330
BstACI	GRCGYC	2 cut(s)	251, 271
BstBI	TTCGAA	1 cut(s)	324
BstC8I	GCNNGC	3 cut(s)	105, 318, 573
BstDEI	CTNAG	3 cut(s)	171, 231, 705
BstF5I	GGATG	4 cut(s)	41, 421, 523, 685
BstHHI	GCGC	1 cut(s)	103
BstKTI	GATC	5 cut(s)	157, 294, 427, 616, 807
BstMAI	GTCTC	6 cut(s)	76, 262, 290, 303, 703, 728
BstMBI	GATC	5 cut(s)	154, 291, 424, 613, 804
BstMCI	CGRYCG	2 cut(s)	82, 440
BstMWI	GCNNNNNNNGC	2 cut(s)	113, 448
BstNI	CCWGG	2 cut(s)	553, 585
BstSCI	CCNGG	3 cut(s)	66, 551, 583
BstV1I	GCAGC	1 cut(s)	462
BstV2I	GAAGAC	2 cut(s)	10, 650
BsuRI	GGCC	1 cut(s)	847
BtsCI	GGATG	4 cut(s)	41, 421, 523, 685
BtsIMutI	CAGTG	2 cut(s)	54, 164
Cac8I	GCNNGC	3 cut(s)	105, 318, 573
CfoI	GCGC	1 cut(s)	103
CseI	GACGC	3 cut(s)	240, 537, 554
Csp6I	GTAC	1 cut(s)	219
CviAII	CATG	3 cut(s)	204, 356, 580
CviJI	RGCY	6 cut(s)	107, 245, 533, 633, 772, 847
CviKI_1	RGCY	6 cut(s)	107, 245, 533, 633, 772, 847
CviQI	GTAC	1 cut(s)	219
DdeI	CTNAG	3 cut(s)	171, 231, 705
DpnI	GATC	5 cut(s)	156, 293, 426, 615, 806
DpnII	GATC	5 cut(s)	154, 291, 424, 613, 804
EciI	GGCGGA	1 cut(s)	34
Eco130I	CCWWGG	1 cut(s)	668
Eco147I	AGGCCT	1 cut(s)	847
Eco31I	GGTCTC	1 cut(s)	76
Eco57I	CTGAAG	1 cut(s)	507
Eco88I	CYCGRG	1 cut(s)	634
EcoRII	CCWGG	2 cut(s)	551, 583
EcoT14I	CCWWGG	1 cut(s)	668
ErhI	CCWWGG	1 cut(s)	668
Esp3I	CGTCTC	1 cut(s)	262
FaeI	CATG	3 cut(s)	207, 359, 583
FaiI	YATR	5 cut(s)	205, 357, 362, 519, 581
FaqI	GGGAC	1 cut(s)	648
FatI	CATG	3 cut(s)	203, 355, 579
Fnu4HI	GCNGC	2 cut(s)	62, 476
FokI	GGATG	4 cut(s)	28, 428, 510, 692
Fsp4HI	GCNGC	2 cut(s)	62, 476
FspBI	CTAG	4 cut(s)	8, 129, 276, 843
GlaI	GCGC	1 cut(s)	102
GluI	GCNGC	2 cut(s)	62, 476
GsaI	CCCAGC	1 cut(s)	798
HaeIII	GGCC	1 cut(s)	847
HapII	CCGG	4 cut(s)	67, 75, 436, 479
HgaI	GACGC	3 cut(s)	240, 537, 554
HhaI	GCGC	1 cut(s)	103
Hin1I	GRCGYC	2 cut(s)	251, 271
Hin1II	CATG	3 cut(s)	207, 359, 583
Hin6I	GCGC	1 cut(s)	101
HinP1I	GCGC	1 cut(s)	101
HinfI	GANTC	4 cut(s)	196, 482, 504, 701
HpaII	CCGG	4 cut(s)	67, 75, 436, 479
HphI	GGTGA	3 cut(s)	438, 623, 754
Hpy166II	GTNNAC	2 cut(s)	177, 726
Hpy188I	TCNGA	6 cut(s)	97, 113, 379, 487, 757, 809
Hpy188III	TCNNGA	4 cut(s)	289, 295, 527, 648
Hpy8I	GTNNAC	2 cut(s)	177, 726
HpyAV	CCTTC	4 cut(s)	482, 586, 739, 775
HpyCH4III	ACNGT	2 cut(s)	58, 330
HpyCH4IV	ACGT	2 cut(s)	271, 863
HpyCH4V	TGCA	2 cut(s)	54, 367
HpyF10VI	GCNNNNNNNGC	2 cut(s)	113, 448
HpyF3I	CTNAG	3 cut(s)	171, 231, 705
HpySE526I	ACGT	2 cut(s)	271, 863
Hsp92I	GRCGYC	2 cut(s)	251, 271
Hsp92II	CATG	3 cut(s)	207, 359, 583
HspAI	GCGC	1 cut(s)	101
KpnI	GGTACC	1 cut(s)	222
Kzo9I	GATC	5 cut(s)	154, 291, 424, 613, 804
Lsp1109I	GCAGC	1 cut(s)	462
LweI	GCATC	7 cut(s)	50, 390, 460, 532, 670, 802, 826
MaeI	CTAG	4 cut(s)	8, 129, 276, 843
MaeII	ACGT	2 cut(s)	271, 863
MaeIII	GTNAC	2 cut(s)	821, 859
MalI	GATC	5 cut(s)	156, 293, 426, 615, 806
MbiI	CCGCTC	1 cut(s)	543
MboI	GATC	5 cut(s)	154, 291, 424, 613, 804
MboII	GAAGA	3 cut(s)	10, 419, 650
MhlI	GDGCHC	1 cut(s)	118
MluCI	AATT	2 cut(s)	236, 420
MlyI	GAGTC	2 cut(s)	498, 710
MslI	CAYNNNNRTG	1 cut(s)	459
MspI	CCGG	4 cut(s)	67, 75, 436, 479
MspR9I	CCNGG	3 cut(s)	68, 553, 585
Mva1269I	GAATGC	1 cut(s)	320
MvaI	CCWGG	2 cut(s)	553, 585
MwoI	GCNNNNNNNGC	2 cut(s)	113, 448
NciI	CCSGG	1 cut(s)	68
NdeII	GATC	5 cut(s)	154, 291, 424, 613, 804
NlaIII	CATG	3 cut(s)	207, 359, 583
NlaIV	GGNNCC	4 cut(s)	65, 220, 332, 763
NmuCI	GTSAC	1 cut(s)	821
NspV	TTCGAA	1 cut(s)	324
PaeR7I	CTCGAG	1 cut(s)	634
PceI	AGGCCT	1 cut(s)	847
PctI	GAATGC	1 cut(s)	320
PfeI	GAWTC	2 cut(s)	196, 482
PkrI	GCNGC	2 cut(s)	63, 477
PleI	GAGTC	2 cut(s)	498, 709
PpsI	GAGTC	2 cut(s)	498, 709
Psp6I	CCWGG	2 cut(s)	551, 583
PspFI	CCCAGC	1 cut(s)	794
PspGI	CCWGG	2 cut(s)	551, 583
PspN4I	GGNNCC	4 cut(s)	65, 220, 332, 763
PspXI	VCTCGAGB	1 cut(s)	634
RsaI	GTAC	1 cut(s)	220
RsaNI	GTAC	1 cut(s)	219
RseI	CAYNNNNRTG	1 cut(s)	459
SatI	GCNGC	2 cut(s)	62, 476
Sau3AI	GATC	5 cut(s)	154, 291, 424, 613, 804
SchI	GAGTC	2 cut(s)	498, 710
ScrFI	CCNGG	3 cut(s)	68, 553, 585
SduI	GDGCHC	1 cut(s)	118
SfaNI	GCATC	7 cut(s)	50, 390, 460, 532, 670, 802, 826
Sfr274I	CTCGAG	1 cut(s)	634
SfuI	TTCGAA	1 cut(s)	324
SlaI	CTCGAG	1 cut(s)	634
SmiMI	CAYNNNNRTG	1 cut(s)	459
SmlI	CTYRAG	1 cut(s)	634
SmoI	CTYRAG	1 cut(s)	634
Sse9I	AATT	2 cut(s)	236, 420
SseBI	AGGCCT	1 cut(s)	847
SsiI	CCGC	6 cut(s)	45, 61, 78, 334, 449, 541
SspMI	CTAG	4 cut(s)	8, 129, 276, 843
StuI	AGGCCT	1 cut(s)	847
StyD4I	CCNGG	3 cut(s)	66, 551, 583
StyI	CCWWGG	1 cut(s)	668
TaaI	ACNGT	2 cut(s)	58, 330
TaiI	ACGT	2 cut(s)	274, 866
TaqI	TCGA	4 cut(s)	153, 294, 324, 635
TasI	AATT	2 cut(s)	236, 420
TauI	GCSGC	1 cut(s)	64
TfiI	GAWTC	2 cut(s)	196, 482
TscAI	CASTG	2 cut(s)	61, 164
TseFI	GTSAC	1 cut(s)	821
TseI	GCWGC	1 cut(s)	475
Tsp45I	GTSAC	1 cut(s)	821
TspDTI	ATGAA	4 cut(s)	419, 432, 568, 636
TspGWI	ACGGA	1 cut(s)	341
TspRI	CASTG	2 cut(s)	61, 164
XapI	RAATTY	1 cut(s)	236
XhoI	CTCGAG	1 cut(s)	634
XspI	CTAG	4 cut(s)	8, 129, 276, 843
ZraI	GACGTC	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.