Rh7CG389900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0005205
Physical Location & Seq
Forward (+)
49293618 .. 49295161
1544 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG389900.1

Sequence Viewer

Length: 351 bp
ATGTCAGGAACCAGAGAAGCAAAGCCAATCAATAGGATTGGTAGTGACAACGTCCATGTAGCACCCCACAAAGGACAACACTTTCCCTGGCACAGTCCCGAGGTACTCCACAATTACGTTTCCCTTGACAGGGTAGTTAGTCATGTGATTGATAAGCAAGGTCTCGCCGCTAGTGGTGGTTGCGTAGGGCAAGTGCGAATCGAGCAAGTGCTTCACCATTTGGTACTCCTAAGGAATCAGGTTAAGCGAGTTATTCTGGATGAACTTGGCCTCCCCGATAAGCTTGGACAGGAGGGAAATGAAGGAGTCATTGTCAACGCCGAAAAGATTAACACAAGTTTAGATCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

12.73

Weight (kDa)

6.7

Isoelectric Point (pI)

33.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 168
AclWI GGATC 1 cut(s) 338
AfaI GTAC 2 cut(s) 105, 225
AfiI CCNNNNNNNGG 3 cut(s) 71, 129, 130
AjnI CCWGG 1 cut(s) 86
AloI GAACNNNNNNTCC 2 cut(s) 255, 287
AluBI AGCT 1 cut(s) 283
AluI AGCT 1 cut(s) 283
Alw26I GTCTC 1 cut(s) 167
AlwI GGATC 1 cut(s) 338
Ama87I CYCGRG 1 cut(s) 98
AoxI GGCC 1 cut(s) 268
AsuHPI GGTGA 1 cut(s) 206
AvaI CYCGRG 1 cut(s) 98
AxyI CCTNAGG 1 cut(s) 230
BciT130I CCWGG 1 cut(s) 88
BcoDI GTCTC 1 cut(s) 167
BfaI CTAG 1 cut(s) 171
BisI GCNGC 1 cut(s) 168
BlsI GCNGC 1 cut(s) 169
Bme1390I CCNGG 1 cut(s) 88
BmeT110I CYCGRG 1 cut(s) 98
BmiI GGNNCC 1 cut(s) 10
BmrFI CCNGG 1 cut(s) 88
BsaI GGTCTC 1 cut(s) 167
BsaJI CCNNGG 2 cut(s) 86, 99
BsaXI ACNNNNNCTCC 4 cut(s) 255, 285, 297, 327
Bsc4I CCNNNNNNNGG 3 cut(s) 71, 129, 130
Bse21I CCTNAGG 1 cut(s) 230
BseBI CCWGG 1 cut(s) 88
BseDI CCNNGG 2 cut(s) 86, 99
BseGI GGATG 1 cut(s) 265
BseLI CCNNNNNNNGG 3 cut(s) 71, 129, 130
BshFI GGCC 1 cut(s) 270
BsiHKCI CYCGRG 1 cut(s) 98
BslFI GGGAC 1 cut(s) 81
BslI CCNNNNNNNGG 3 cut(s) 71, 129, 130
BsmAI GTCTC 1 cut(s) 167
BsmFI GGGAC 1 cut(s) 81
BsnI GGCC 1 cut(s) 270
Bso31I GGTCTC 1 cut(s) 167
BsoBI CYCGRG 1 cut(s) 98
Bsp143I GATC 1 cut(s) 343
BspACI CCGC 1 cut(s) 168
BspANI GGCC 1 cut(s) 270
BspLI GGNNCC 1 cut(s) 10
BspPI GGATC 1 cut(s) 338
BspTNI GGTCTC 1 cut(s) 167
BssECI CCNNGG 2 cut(s) 86, 99
BssMI GATC 1 cut(s) 343
Bst2UI CCWGG 1 cut(s) 88
Bst4CI ACNGT 1 cut(s) 95
BstDEI CTNAG 1 cut(s) 230
BstF5I GGATG 1 cut(s) 265
BstKTI GATC 1 cut(s) 346
BstMAI GTCTC 1 cut(s) 167
BstMBI GATC 1 cut(s) 343
BstMWI GCNNNNNNNGC 1 cut(s) 202
BstNI CCWGG 1 cut(s) 88
BstSCI CCNGG 1 cut(s) 86
BstX2I RGATCY 1 cut(s) 343
BstYI RGATCY 1 cut(s) 343
Bsu36I CCTNAGG 1 cut(s) 230
BsuRI GGCC 1 cut(s) 270
BtsCI GGATG 1 cut(s) 265
Csp6I GTAC 2 cut(s) 104, 224
CviAII CATG 3 cut(s) 56, 143, 348
CviJI RGCY 3 cut(s) 25, 270, 283
CviKI_1 RGCY 3 cut(s) 25, 270, 283
CviQI GTAC 2 cut(s) 104, 224
DdeI CTNAG 1 cut(s) 230
DpnI GATC 1 cut(s) 345
DpnII GATC 1 cut(s) 343
Eco31I GGTCTC 1 cut(s) 167
Eco81I CCTNAGG 1 cut(s) 230
Eco88I CYCGRG 1 cut(s) 98
EcoRII CCWGG 1 cut(s) 86
FaeI CATG 3 cut(s) 59, 146, 351
FaiI YATR 3 cut(s) 57, 144, 349
FaqI GGGAC 1 cut(s) 81
FatI CATG 3 cut(s) 55, 142, 347
Fnu4HI GCNGC 1 cut(s) 168
FokI GGATG 1 cut(s) 272
Fsp4HI GCNGC 1 cut(s) 168
FspBI CTAG 1 cut(s) 171
GluI GCNGC 1 cut(s) 168
HaeIII GGCC 1 cut(s) 270
Hin1II CATG 3 cut(s) 59, 146, 351
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HindIII AAGCTT 1 cut(s) 281
HinfI GANTC 3 cut(s) 198, 235, 306
HphI GGTGA 1 cut(s) 206
Hpy166II GTNNAC 1 cut(s) 316
Hpy188III TCNNGA 3 cut(s) 6, 98, 257
Hpy8I GTNNAC 1 cut(s) 316
HpyAV CCTTC 1 cut(s) 296
HpyCH4III ACNGT 1 cut(s) 95
HpyCH4IV ACGT 2 cut(s) 51, 117
HpyF10VI GCNNNNNNNGC 1 cut(s) 202
HpyF3I CTNAG 1 cut(s) 230
HpySE526I ACGT 2 cut(s) 51, 117
Hsp92II CATG 3 cut(s) 59, 146, 351
Kzo9I GATC 1 cut(s) 343
LpnPI CCDG 7 cut(s) 25, 73, 100, 115, 224, 242, 275
MaeI CTAG 1 cut(s) 171
MaeII ACGT 2 cut(s) 51, 117
MaeIII GTNAC 1 cut(s) 44
MalI GATC 1 cut(s) 345
MboI GATC 1 cut(s) 343
MflI RGATCY 1 cut(s) 343
MluCI AATT 1 cut(s) 112
MlyI GAGTC 1 cut(s) 315
MnlI CCTC 3 cut(s) 94, 281, 286
MseI TTAA 2 cut(s) 243, 330
MspR9I CCNGG 1 cut(s) 88
MvaI CCWGG 1 cut(s) 88
MwoI GCNNNNNNNGC 1 cut(s) 202
NdeII GATC 1 cut(s) 343
NlaIII CATG 3 cut(s) 59, 146, 351
NlaIV GGNNCC 1 cut(s) 10
NmuCI GTSAC 1 cut(s) 44
PfeI GAWTC 2 cut(s) 198, 235
PflFI GACNNNGTC 1 cut(s) 50
PkrI GCNGC 1 cut(s) 169
PleI GAGTC 1 cut(s) 314
PpsI GAGTC 1 cut(s) 314
Psp6I CCWGG 1 cut(s) 86
PspGI CCWGG 1 cut(s) 86
PspN4I GGNNCC 1 cut(s) 10
PsuI RGATCY 1 cut(s) 343
PsyI GACNNNGTC 1 cut(s) 50
RsaI GTAC 2 cut(s) 105, 225
RsaNI GTAC 2 cut(s) 104, 224
SaqAI TTAA 2 cut(s) 243, 330
SatI GCNGC 1 cut(s) 168
Sau3AI GATC 1 cut(s) 343
SchI GAGTC 1 cut(s) 315
ScrFI CCNGG 1 cut(s) 88
SetI ASST 6 cut(s) 54, 105, 120, 163, 243, 285
Sse9I AATT 1 cut(s) 112
SsiI CCGC 1 cut(s) 168
SspMI CTAG 1 cut(s) 171
StyD4I CCNGG 1 cut(s) 86
TaaI ACNGT 1 cut(s) 95
TaiI ACGT 2 cut(s) 54, 120
TaqI TCGA 1 cut(s) 201
TasI AATT 1 cut(s) 112
TauI GCSGC 1 cut(s) 170
TfiI GAWTC 2 cut(s) 198, 235
Tru1I TTAA 2 cut(s) 243, 330
Tru9I TTAA 2 cut(s) 243, 330
TseFI GTSAC 1 cut(s) 44
Tsp45I GTSAC 1 cut(s) 44
TspDTI ATGAA 2 cut(s) 276, 315
Tth111I GACNNNGTC 1 cut(s) 50
XspI CTAG 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.