Rmu_co8368975.1_g000001

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8368975.1
OG0005205
Physical Location & Seq
Forward (+)
322 .. 843
522 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8368975.1_g000001.1.cds

Sequence Viewer

Length: 405 bp
atgatcagagcacaaaggcgacaggtgcataacccgggcagctctgaaccgttgctggggtggggggttccttcagctgagcatgttgaattactagcgggttttgaagctttggaattggcgcgggagttgggtttgcaggtggtgaagtttgagtctgattgtatgcagttggttggttcggtagctcttctgttggagtctcaacctggccttcgtttgctttacatggccttacagtcacttctttctcaattccctagttgttattttaaacatatttttagggagaagattgcaattgctcatcacttagttgggtgggcacttcattcaaaagttttttcttcttttactggtcctccaagcttcttggaggatttgttatcaactgattgtacttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3

Protein Analysis

134

Amino Acids

14.89

Weight (kDa)

6.03

Isoelectric Point (pI)

56.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 130
Acc36I ACCTGC 1 cut(s) 130
AccII CGCG 1 cut(s) 124
AciI CCGC 2 cut(s) 98, 124
AcuI CTGAAG 1 cut(s) 57
AfaI GTAC 1 cut(s) 400
AfiI CCNNNNNNNGG 1 cut(s) 56
AgsI TTSAA 3 cut(s) 89, 107, 336
AjnI CCWGG 1 cut(s) 208
AluBI AGCT 5 cut(s) 42, 77, 110, 188, 369
AluI AGCT 5 cut(s) 42, 77, 110, 188, 369
Alw21I GWGCWC 1 cut(s) 13
Alw26I GTCTC 1 cut(s) 207
Ama87I CYCGRG 1 cut(s) 34
AoxI GGCC 2 cut(s) 211, 231
ApeKI GCWGC 1 cut(s) 39
AspLEI GCGC 1 cut(s) 124
AspS9I GGNCC 1 cut(s) 359
AsuC2I CCSGG 2 cut(s) 35, 36
AsuHPI GGTGA 1 cut(s) 157
AvaI CYCGRG 1 cut(s) 34
AvaII GGWCC 1 cut(s) 359
BaeGI GKGCMC 1 cut(s) 328
Bbv12I GWGCWC 1 cut(s) 13
BbvI GCAGC 1 cut(s) 51
BciT130I CCWGG 1 cut(s) 210
BclI TGATCA 1 cut(s) 3
BcnI CCSGG 2 cut(s) 35, 36
BcoDI GTCTC 1 cut(s) 207
BfaI CTAG 2 cut(s) 95, 261
BfuAI ACCTGC 1 cut(s) 130
BisI GCNGC 1 cut(s) 40
BlpI GCTNAGC 1 cut(s) 78
BlsI GCNGC 1 cut(s) 41
Bme1390I CCNGG 3 cut(s) 35, 36, 210
Bme18I GGWCC 1 cut(s) 359
BmeT110I CYCGRG 1 cut(s) 34
BmgT120I GGNCC 1 cut(s) 359
BmiI GGNNCC 1 cut(s) 69
BmrFI CCNGG 3 cut(s) 35, 36, 210
Bpu1102I GCTNAGC 1 cut(s) 78
BpuMI CCSGG 2 cut(s) 35, 36
BsaJI CCNNGG 1 cut(s) 34
BsaXI ACNNNNNCTCC 4 cut(s) 346, 368, 376, 398
Bsc4I CCNNNNNNNGG 1 cut(s) 56
Bse1I ACTGG 1 cut(s) 361
BseBI CCWGG 1 cut(s) 210
BseDI CCNNGG 1 cut(s) 34
BseLI CCNNNNNNNGG 1 cut(s) 56
BseMII CTCAG 1 cut(s) 69
BseNI ACTGG 1 cut(s) 361
BseSI GKGCMC 1 cut(s) 328
BseXI GCAGC 1 cut(s) 51
BseYI CCCAGC 1 cut(s) 55
Bsh1236I CGCG 1 cut(s) 124
BshFI GGCC 2 cut(s) 213, 233
BsiHKAI GWGCWC 1 cut(s) 13
BsiHKCI CYCGRG 1 cut(s) 34
BsiSI CCGG 1 cut(s) 35
BslI CCNNNNNNNGG 1 cut(s) 56
BsmAI GTCTC 1 cut(s) 207
BsnI GGCC 2 cut(s) 213, 233
BsoBI CYCGRG 1 cut(s) 34
Bsp1286I GDGCHC 2 cut(s) 13, 328
Bsp143I GATC 1 cut(s) 3
Bsp1720I GCTNAGC 1 cut(s) 78
BspACI CCGC 2 cut(s) 98, 124
BspANI GGCC 2 cut(s) 213, 233
BspCNI CTCAG 1 cut(s) 70
BspFNI CGCG 1 cut(s) 124
BspLI GGNNCC 1 cut(s) 69
BspMI ACCTGC 1 cut(s) 130
BspQI GCTCTTC 1 cut(s) 195
BsrI ACTGG 1 cut(s) 361
BssECI CCNNGG 1 cut(s) 34
BssMI GATC 1 cut(s) 3
Bst2UI CCWGG 1 cut(s) 210
Bst4CI ACNGT 2 cut(s) 51, 240
Bst6I CTCTTC 1 cut(s) 195
BstDEI CTNAG 2 cut(s) 78, 313
BstFNI CGCG 1 cut(s) 124
BstHHI GCGC 1 cut(s) 124
BstKTI GATC 1 cut(s) 6
BstMAI GTCTC 1 cut(s) 207
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 1 cut(s) 25
BstNI CCWGG 1 cut(s) 210
BstNSI RCATGY 1 cut(s) 86
BstSCI CCNGG 3 cut(s) 33, 34, 208
BstSLI GKGCMC 1 cut(s) 328
BstUI CGCG 1 cut(s) 124
BstV1I GCAGC 1 cut(s) 51
BsuRI GGCC 2 cut(s) 213, 233
BveI ACCTGC 1 cut(s) 130
CfoI GCGC 1 cut(s) 124
Cfr13I GGNCC 1 cut(s) 359
Cfr9I CCCGGG 1 cut(s) 34
Csp6I GTAC 1 cut(s) 399
CviAII CATG 2 cut(s) 83, 229
CviJI RGCY 7 cut(s) 42, 77, 110, 188, 213, 233, 369
CviKI_1 RGCY 7 cut(s) 42, 77, 110, 188, 213, 233, 369
CviQI GTAC 1 cut(s) 399
DdeI CTNAG 2 cut(s) 78, 313
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
DraI TTTAAA 1 cut(s) 274
Eam1104I CTCTTC 1 cut(s) 195
EarI CTCTTC 1 cut(s) 195
Eco47I GGWCC 1 cut(s) 359
Eco57I CTGAAG 1 cut(s) 57
Eco88I CYCGRG 1 cut(s) 34
EcoRII CCWGG 1 cut(s) 208
FaeI CATG 2 cut(s) 86, 232
FaiI YATR 5 cut(s) 30, 84, 167, 230, 279
FatI CATG 2 cut(s) 82, 228
FauI CCCGC 2 cut(s) 91, 117
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 1 cut(s) 40
Fsp4HI GCNGC 1 cut(s) 40
FspBI CTAG 2 cut(s) 95, 261
GlaI GCGC 1 cut(s) 123
GluI GCNGC 1 cut(s) 40
GsaI CCCAGC 1 cut(s) 59
HaeIII GGCC 2 cut(s) 213, 233
HapII CCGG 1 cut(s) 35
HhaI GCGC 1 cut(s) 124
Hin1II CATG 2 cut(s) 86, 232
Hin6I GCGC 1 cut(s) 122
HinP1I GCGC 1 cut(s) 122
HindIII AAGCTT 2 cut(s) 108, 367
HinfI GANTC 2 cut(s) 155, 200
HpaII CCGG 1 cut(s) 35
HphI GGTGA 1 cut(s) 157
Hpy188I TCNGA 3 cut(s) 8, 46, 160
HpyAV CCTTC 2 cut(s) 81, 224
HpyCH4III ACNGT 2 cut(s) 51, 240
HpyCH4V TGCA 4 cut(s) 28, 139, 169, 299
HpyF10VI GCNNNNNNNGC 1 cut(s) 25
HpyF3I CTNAG 2 cut(s) 78, 313
Hsp92II CATG 2 cut(s) 86, 232
HspAI GCGC 1 cut(s) 122
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 1 cut(s) 3
LguI GCTCTTC 1 cut(s) 195
LpnPI CCDG 7 cut(s) 8, 41, 48, 125, 195, 222, 342
Lsp1109I GCAGC 1 cut(s) 51
MaeI CTAG 2 cut(s) 95, 261
MaeIII GTNAC 1 cut(s) 240
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 3 cut(s) 182, 304, 339
MfeI CAATTG 1 cut(s) 300
MhlI GDGCHC 2 cut(s) 13, 328
MluCI AATT 4 cut(s) 89, 116, 254, 300
MlyI GAGTC 2 cut(s) 164, 209
MmeI TCCRAC 1 cut(s) 177
MnlI CCTC 2 cut(s) 370, 372
MseI TTAA 2 cut(s) 273, 403
MspA1I CMGCKG 1 cut(s) 77
MspI CCGG 1 cut(s) 35
MspR9I CCNGG 3 cut(s) 35, 36, 210
MunI CAATTG 1 cut(s) 300
MvaI CCWGG 1 cut(s) 210
MvnI CGCG 1 cut(s) 124
MwoI GCNNNNNNNGC 1 cut(s) 25
NciI CCSGG 2 cut(s) 35, 36
NdeII GATC 1 cut(s) 3
NlaIII CATG 2 cut(s) 86, 232
NlaIV GGNNCC 1 cut(s) 69
NmuCI GTSAC 1 cut(s) 240
NspI RCATGY 1 cut(s) 86
PaqCI CACCTGC 1 cut(s) 130
PciSI GCTCTTC 1 cut(s) 195
PkrI GCNGC 1 cut(s) 41
PleI GAGTC 2 cut(s) 163, 208
PpsI GAGTC 2 cut(s) 163, 208
Psp6I CCWGG 1 cut(s) 208
PspFI CCCAGC 1 cut(s) 55
PspGI CCWGG 1 cut(s) 208
PspN4I GGNNCC 1 cut(s) 69
PspPI GGNCC 1 cut(s) 359
PvuII CAGCTG 1 cut(s) 77
RsaI GTAC 1 cut(s) 400
RsaNI GTAC 1 cut(s) 399
SapI GCTCTTC 1 cut(s) 195
SaqAI TTAA 2 cut(s) 273, 403
SatI GCNGC 1 cut(s) 40
Sau3AI GATC 1 cut(s) 3
Sau96I GGNCC 1 cut(s) 359
SchI GAGTC 2 cut(s) 164, 209
ScrFI CCNGG 3 cut(s) 35, 36, 210
SduI GDGCHC 2 cut(s) 13, 328
SetI ASST 8 cut(s) 27, 44, 79, 112, 144, 190, 211, 371
SinI GGWCC 1 cut(s) 359
SmaI CCCGGG 1 cut(s) 36
Sse9I AATT 4 cut(s) 89, 116, 254, 300
SsiI CCGC 2 cut(s) 98, 124
SspMI CTAG 2 cut(s) 95, 261
StyD4I CCNGG 3 cut(s) 33, 34, 208
TaaI ACNGT 2 cut(s) 51, 240
TasI AATT 4 cut(s) 89, 116, 254, 300
TatI WGTACW 1 cut(s) 398
Tru1I TTAA 2 cut(s) 273, 403
Tru9I TTAA 2 cut(s) 273, 403
TseFI GTSAC 1 cut(s) 240
TseI GCWGC 1 cut(s) 39
Tsp45I GTSAC 1 cut(s) 240
TspDTI ATGAA 1 cut(s) 320
TspMI CCCGGG 1 cut(s) 34
VpaK11BI GGWCC 1 cut(s) 359
XceI RCATGY 1 cut(s) 86
XmaI CCCGGG 1 cut(s) 34
XspI CTAG 2 cut(s) 95, 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.