Rh7CG389100

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0005205
Physical Location & Seq
Forward (+)
49163781 .. 49168359
4579 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG389100.1

Sequence Viewer

Length: 765 bp
ATGACACCAGGAACGGGTCGTCGTACTCCTCCGCTAGCATGGAGGAAGGTGCTAGAGACGGCCATCCAAGGAGGCGGCCGCTCTCACCCTAGCAGAGCGCTAGATGTTCCAGTTCATTGTGGGCTATGTCAGCAGGACTCGGAAGTAGAAGAGCATCTCTTCAGGGACTGTGTAGTTTCAAGAAGGATCCTCACTCCTCTACTTGGACAGTTGGCTCAGCAACAACTTCCATTTCCAGATTGGTTAAAGCTTTGTATAGGGGTGTTAACTTCTTACAAATGGTCTGAATTATTGGTGCTTCTTTGGTCTATTTGGAAGGCTAGGAATGATAAGGTTTGGCATGACAAGGCATGCGATCCTCCTCAAGTTATTGTGAGAGCTCATTTGTGGCTTCAGAATTATCTACAGGTTAATCGTCCTCCAGTTCAGATTGGTAGTCAAAGGTCTAAATGGATGAAACCGTTGCCAGGGTGGGTGAGTATTTGCTTGGATGGTGCTTTTAATTCTCTTTCTTGGGAGGGGGGTGTGGGAGTTGTTGCTAGAGATAGCAATGGGACTTGTTTAGGTGGACGGGCTAAATACATCCAGGGGGTTTCTTCAGCTGAGCATGTTGAATTACTAGCGGGTTTTGAAGCTGTGGAATTGGTGCGGGAGTTGGATTTGCAGGCGGTGAAGTTTGAGTCTGATTGTATGCAGTTGGTTGGTTCGGTAGCTCTTCCGTTGGAGTCTAAACCTGGCCTTCATTTGCTTTACATGGACTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 zf-RVT

Protein Analysis

254

Amino Acids

28.33

Weight (kDa)

7.61

Isoelectric Point (pI)

50.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 164 - 236 1.1e-10 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 81
AciI CCGC 6 cut(s) 32, 75, 79, 623, 649, 668
AclWI GGATC 3 cut(s) 181, 194, 350
AcoI YGGCCR 2 cut(s) 60, 76
AcuI CTGAAG 3 cut(s) 145, 377, 582
AfaI GTAC 1 cut(s) 25
AfeI AGCGCT 1 cut(s) 99
AfiI CCNNNNNNNGG 3 cut(s) 14, 203, 467
AgsI TTSAA 3 cut(s) 180, 614, 632
AjnI CCWGG 4 cut(s) 7, 466, 585, 733
AluBI AGCT 5 cut(s) 250, 380, 602, 635, 713
AluI AGCT 5 cut(s) 250, 380, 602, 635, 713
Alw21I GWGCWC 1 cut(s) 382
Alw26I GTCTC 1 cut(s) 50
AlwI GGATC 3 cut(s) 181, 194, 350
AlwNI CAGNNNCTG 1 cut(s) 168
Aor51HI AGCGCT 1 cut(s) 99
AoxI GGCC 3 cut(s) 60, 76, 736
AspLEI GCGC 1 cut(s) 100
AsuHPI GGTGA 3 cut(s) 77, 487, 682
AsuNHI GCTAGC 1 cut(s) 34
BamHI GGATCC 1 cut(s) 186
BanII GRGCYC 1 cut(s) 382
Bbv12I GWGCWC 1 cut(s) 382
BccI CCATC 2 cut(s) 71, 485
BceAI ACGGC 1 cut(s) 75
BciT130I CCWGG 4 cut(s) 9, 468, 587, 735
BcoDI GTCTC 1 cut(s) 50
BfaI CTAG 7 cut(s) 35, 53, 90, 101, 321, 540, 620
BfmI CTRYAG 1 cut(s) 404
BfoI RGCGCY 1 cut(s) 101
BisI GCNGC 2 cut(s) 76, 79
BlpI GCTNAGC 2 cut(s) 216, 603
BlsI GCNGC 2 cut(s) 77, 80
Bme1390I CCNGG 4 cut(s) 9, 468, 587, 735
BmiI GGNNCC 1 cut(s) 188
BmrFI CCNGG 4 cut(s) 9, 468, 587, 735
BmsI GCATC 1 cut(s) 163
BmtI GCTAGC 1 cut(s) 38
BpmI CTGGAG 1 cut(s) 405
Bpu1102I GCTNAGC 2 cut(s) 216, 603
BpuEI CTTGAG 1 cut(s) 348
BsaJI CCNNGG 3 cut(s) 67, 467, 586
Bsc4I CCNNNNNNNGG 3 cut(s) 14, 203, 467
Bse1I ACTGG 2 cut(s) 110, 422
Bse3DI GCAATG 1 cut(s) 556
BseBI CCWGG 4 cut(s) 9, 468, 587, 735
BseDI CCNNGG 3 cut(s) 67, 467, 586
BseGI GGATG 4 cut(s) 63, 459, 496, 582
BseLI CCNNNNNNNGG 3 cut(s) 14, 203, 467
BseMI GCAATG 1 cut(s) 556
BseMII CTCAG 2 cut(s) 230, 594
BseNI ACTGG 2 cut(s) 110, 422
BseRI GAGGAG 3 cut(s) 18, 186, 351
BseX3I CGGCCG 1 cut(s) 76
Bsh1285I CGRYCG 1 cut(s) 79
BshFI GGCC 3 cut(s) 62, 78, 738
BsiEI CGRYCG 1 cut(s) 79
BsiHKAI GWGCWC 1 cut(s) 382
BslFI GGGAC 2 cut(s) 179, 568
BslI CCNNNNNNNGG 3 cut(s) 14, 203, 467
BsmAI GTCTC 1 cut(s) 50
BsmBI CGTCTC 1 cut(s) 50
BsmFI GGGAC 2 cut(s) 179, 568
BsnI GGCC 3 cut(s) 62, 78, 738
Bsp1286I GDGCHC 1 cut(s) 382
Bsp143I GATC 2 cut(s) 186, 355
Bsp1720I GCTNAGC 2 cut(s) 216, 603
BspACI CCGC 6 cut(s) 32, 75, 79, 623, 649, 668
BspANI GGCC 3 cut(s) 62, 78, 738
BspCNI CTCAG 2 cut(s) 229, 595
BspLI GGNNCC 1 cut(s) 188
BspOI GCTAGC 1 cut(s) 38
BspPI GGATC 3 cut(s) 181, 194, 350
BspQI GCTCTTC 2 cut(s) 144, 720
BsrBI CCGCTC 1 cut(s) 81
BsrDI GCAATG 1 cut(s) 556
BsrI ACTGG 2 cut(s) 110, 422
BssECI CCNNGG 3 cut(s) 67, 467, 586
BssMI GATC 2 cut(s) 186, 355
BssT1I CCWWGG 1 cut(s) 67
Bst2UI CCWGG 4 cut(s) 9, 468, 587, 735
Bst4CI ACNGT 3 cut(s) 170, 210, 462
Bst6I CTCTTC 3 cut(s) 144, 164, 720
BstC8I GCNNGC 3 cut(s) 36, 352, 666
BstDEI CTNAG 2 cut(s) 216, 603
BstF5I GGATG 4 cut(s) 63, 459, 496, 582
BstH2I RGCGCY 1 cut(s) 101
BstHHI GCGC 1 cut(s) 100
BstKTI GATC 2 cut(s) 189, 358
BstMAI GTCTC 1 cut(s) 50
BstMBI GATC 2 cut(s) 186, 355
BstMCI CGRYCG 1 cut(s) 79
BstMWI GCNNNNNNNGC 1 cut(s) 130
BstNI CCWGG 4 cut(s) 9, 468, 587, 735
BstNSI RCATGY 2 cut(s) 354, 611
BstSCI CCNGG 4 cut(s) 7, 466, 585, 733
BstSFI CTRYAG 1 cut(s) 404
BstX2I RGATCY 1 cut(s) 186
BstYI RGATCY 1 cut(s) 186
BstZI CGGCCG 1 cut(s) 76
BsuRI GGCC 3 cut(s) 62, 78, 738
BtsCI GGATG 4 cut(s) 63, 459, 496, 582
Cac8I GCNNGC 3 cut(s) 36, 352, 666
CaiI CAGNNNCTG 1 cut(s) 168
CciNI GCGGCCGC 1 cut(s) 76
CfoI GCGC 1 cut(s) 100
Csp6I GTAC 1 cut(s) 24
CviAII CATG 5 cut(s) 39, 341, 351, 608, 754
CviQI GTAC 1 cut(s) 24
DdeI CTNAG 2 cut(s) 216, 603
DpnI GATC 2 cut(s) 188, 357
DpnII GATC 2 cut(s) 186, 355
EaeI YGGCCR 2 cut(s) 60, 76
EagI CGGCCG 1 cut(s) 76
Eam1104I CTCTTC 3 cut(s) 144, 164, 720
EarI CTCTTC 3 cut(s) 144, 164, 720
Ecl136II GAGCTC 1 cut(s) 380
EclXI CGGCCG 1 cut(s) 76
Eco130I CCWWGG 1 cut(s) 67
Eco24I GRGCYC 1 cut(s) 382
Eco47III AGCGCT 1 cut(s) 99
Eco52I CGGCCG 1 cut(s) 76
Eco53kI GAGCTC 1 cut(s) 380
Eco57I CTGAAG 3 cut(s) 145, 377, 582
EcoICRI GAGCTC 1 cut(s) 380
EcoRII CCWGG 4 cut(s) 7, 466, 585, 733
EcoT14I CCWWGG 1 cut(s) 67
EcoT38I GRGCYC 1 cut(s) 382
ErhI CCWWGG 1 cut(s) 67
Esp3I CGTCTC 1 cut(s) 50
FaeI CATG 5 cut(s) 42, 344, 354, 611, 757
FaiI YATR 9 cut(s) 40, 127, 257, 342, 352, 609, 692, 755, 763
FaqI GGGAC 2 cut(s) 179, 568
FatI CATG 5 cut(s) 38, 340, 350, 607, 753
FauI CCCGC 2 cut(s) 616, 642
Fnu4HI GCNGC 2 cut(s) 76, 79
FokI GGATG 4 cut(s) 50, 466, 503, 569
FriOI GRGCYC 1 cut(s) 382
Fsp4HI GCNGC 2 cut(s) 76, 79
FspBI CTAG 7 cut(s) 35, 53, 90, 101, 321, 540, 620
GlaI GCGC 1 cut(s) 99
GluI GCNGC 2 cut(s) 76, 79
GsuI CTGGAG 1 cut(s) 405
HaeII RGCGCY 1 cut(s) 101
HaeIII GGCC 3 cut(s) 62, 78, 738
HhaI GCGC 1 cut(s) 100
Hin1II CATG 5 cut(s) 42, 344, 354, 611, 757
Hin6I GCGC 1 cut(s) 98
HinP1I GCGC 1 cut(s) 98
HincII GTYRAC 1 cut(s) 267
HindII GTYRAC 1 cut(s) 267
HindIII AAGCTT 1 cut(s) 248
HinfI GANTC 3 cut(s) 137, 680, 725
HpaI GTTAAC 1 cut(s) 267
HphI GGTGA 3 cut(s) 77, 487, 682
Hpy166II GTNNAC 2 cut(s) 267, 569
Hpy188I TCNGA 5 cut(s) 142, 286, 396, 429, 685
Hpy188III TCNNGA 2 cut(s) 180, 236
Hpy8I GTNNAC 2 cut(s) 267, 569
Hpy99I CGWCG 1 cut(s) 24
HpyAV CCTTC 4 cut(s) 40, 177, 310, 749
HpyCH4III ACNGT 3 cut(s) 170, 210, 462
HpyCH4V TGCA 2 cut(s) 664, 694
HpyF10VI GCNNNNNNNGC 1 cut(s) 130
HpyF3I CTNAG 2 cut(s) 216, 603
Hsp92II CATG 5 cut(s) 42, 344, 354, 611, 757
HspAI GCGC 1 cut(s) 98
KspAI GTTAAC 1 cut(s) 267
Kzo9I GATC 2 cut(s) 186, 355
LguI GCTCTTC 2 cut(s) 144, 720
LweI GCATC 1 cut(s) 163
MaeI CTAG 7 cut(s) 35, 53, 90, 101, 321, 540, 620
MalI GATC 2 cut(s) 188, 357
MbiI CCGCTC 1 cut(s) 81
MboI GATC 2 cut(s) 186, 355
MboII GAAGA 4 cut(s) 151, 161, 588, 707
MflI RGATCY 1 cut(s) 186
MhlI GDGCHC 1 cut(s) 382
MluCI AATT 5 cut(s) 287, 397, 502, 614, 641
MlyI GAGTC 3 cut(s) 131, 689, 734
MmeI TCCRAC 2 cut(s) 636, 702
MnlI CCTC 9 cut(s) 36, 39, 65, 200, 207, 369, 372, 429, 511
MseI TTAA 4 cut(s) 245, 266, 411, 501
MspA1I CMGCKG 1 cut(s) 602
MspR9I CCNGG 4 cut(s) 9, 468, 587, 735
MvaI CCWGG 4 cut(s) 9, 468, 587, 735
MwoI GCNNNNNNNGC 1 cut(s) 130
NdeII GATC 2 cut(s) 186, 355
NheI GCTAGC 1 cut(s) 34
NlaIII CATG 5 cut(s) 42, 344, 354, 611, 757
NlaIV GGNNCC 1 cut(s) 188
NotI GCGGCCGC 1 cut(s) 76
NspI RCATGY 2 cut(s) 354, 611
PaeI GCATGC 1 cut(s) 354
PciSI GCTCTTC 2 cut(s) 144, 720
PkrI GCNGC 2 cut(s) 77, 80
PleI GAGTC 3 cut(s) 131, 688, 733
PpsI GAGTC 3 cut(s) 131, 688, 733
Psp124BI GAGCTC 1 cut(s) 382
Psp6I CCWGG 4 cut(s) 7, 466, 585, 733
PspGI CCWGG 4 cut(s) 7, 466, 585, 733
PspN4I GGNNCC 1 cut(s) 188
PstNI CAGNNNCTG 1 cut(s) 168
PsuI RGATCY 1 cut(s) 186
PvuII CAGCTG 1 cut(s) 602
RsaI GTAC 1 cut(s) 25
RsaNI GTAC 1 cut(s) 24
SacI GAGCTC 1 cut(s) 382
SapI GCTCTTC 2 cut(s) 144, 720
SaqAI TTAA 4 cut(s) 245, 266, 411, 501
SatI GCNGC 2 cut(s) 76, 79
Sau3AI GATC 2 cut(s) 186, 355
SchI GAGTC 3 cut(s) 131, 689, 734
ScrFI CCNGG 4 cut(s) 9, 468, 587, 735
SduI GDGCHC 1 cut(s) 382
SfaNI GCATC 1 cut(s) 163
SfcI CTRYAG 1 cut(s) 404
SmlI CTYRAG 1 cut(s) 363
SmoI CTYRAG 1 cut(s) 363
SphI GCATGC 1 cut(s) 354
Sse9I AATT 5 cut(s) 287, 397, 502, 614, 641
SsiI CCGC 6 cut(s) 32, 75, 79, 623, 649, 668
SspMI CTAG 7 cut(s) 35, 53, 90, 101, 321, 540, 620
SstI GAGCTC 1 cut(s) 382
StyD4I CCNGG 4 cut(s) 7, 466, 585, 733
StyI CCWWGG 1 cut(s) 67
TaaI ACNGT 3 cut(s) 170, 210, 462
TasI AATT 5 cut(s) 287, 397, 502, 614, 641
TauI GCSGC 2 cut(s) 78, 81
Tru1I TTAA 4 cut(s) 245, 266, 411, 501
Tru9I TTAA 4 cut(s) 245, 266, 411, 501
TspDTI ATGAA 3 cut(s) 104, 470, 731
TspGWI ACGGA 1 cut(s) 708
XceI RCATGY 2 cut(s) 354, 611
XcmI CCANNNNNNNNNTGG 1 cut(s) 237
XspI CTAG 7 cut(s) 35, 53, 90, 101, 321, 540, 620
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.