Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005205

Physical Location & Seq

Genomic Coordinates Reverse (-)

34779866 .. 34785103

Gene Structure 5238 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0307300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGACAAGTCAGCTGCGGCGTAGTTTGCTGCAGGCGATGAAACAAATTAAGCAACTGCCACCAGCCTTTCCTTACCCTCTTCCATTTCTTCGTTCTTCTTACTCAACAGAGTTGCAACCTCAGTTATCACCAAAGCTTGTTAAGATCATGGAGCAAAGGCTATCGCTTATCGAACAAAGGAATGCTTGTCTCCACAGTATCATAAACCAGCCGGATGCCACGGCAGAAGAGTATGCAAGGGCGAATAAGGAGCTTCGCAAAATTAGCTCATCCATGGACCTTATAAATCAGTTAAGAGCCATACACAAGGAGATTGATGGGTTGAGGTCACTCATGGCTGAATCTGCTCAAGATAAAGACATGCTTGATATGGTGACCACTGAGTTGGATCAGGCCATCAACGAAGAGAAAAGACTGCACAACCTGTTGCTCAAGACTCTACTCCCCAAGGATGATGCCGATGAGAGGGATTGCATATTGGAGGTTAGAGCAGGAACTGGTGGGGAGGAGGCTTCTTTGTTTGCAATGGACATATTTAAAATGTATGAGAGATTCTCTCACAATAAAGGCTGGATGTTTGAAGTGTTGGATATTACCGAGTCTGATCTTAAAGGATATAAGGAAGCAAGTGCGGCAATCTCAGGGGCTGATGTTTATGGGAAACTTAAATTTGAGAGTGGTATTCACAGAGTACAGCGAGTTCCCGTGACAGAGAAGTCTGGACGCATTCATACTAGTGCTGTTTCTGTTGCTATCCTCCCCCAAGCTGATCAGGTAGATGTCCACCTGAGGAACGAAGATTTGAAAATTGATACCTATAGATCTGGTGGTTCTGGGGGTCAGCATGCAAATACTACAAACAGTGCGGTTAGAATAACTCATATTCCAACTGGGATGACCATAGCCATACAAGATGAACGATCCCAACATATGAACAAGGCCAAGGCACTTAAAGTACTGTGTGCAAAGCTATATGAGATGGAAAGGTCTAGACTACAGAACAATCGGTCAAAACTTCGATTAGAGCAGATTGGTAGTGGGGATCGATCTGAACGCATTCGTACATACAACTTTCCTCAAGGTCGTGTAACTGATCATCGTGTTGGCATTACTCATCATGCAATAAGTGATGTGATGCAGGGAGAGAATCTGGATGTGTTTGTTGATGCACTTCTTTTGCAGCAGGAAATGGATGCAATCGCATCTTTCAGTTCTTCCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

407

Amino Acids

45.91

Weight (kDa)

6.69

Isoelectric Point (pI)

53.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCRF	PF03462	58 - 250	5e-59	PCRF domain
RF-1	PF00472	258 - 367	1.8e-39	RF-1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005205)

Species	Orthologous Gene IDs
malus_domestica	MD07G1185800.v1.1
rosa_chinensis	RchiOBHm_Chr1g0327941
rosa_laevigata	RLG00000018282
rosa_multiflora	Rmu_co8368975.1_g000001 Rmu_sc0002900.1_g000003 Rmu_sc0003410.1_g000003 Rmu_sc0009365.1_g000011 Rmu_sc0011124.1_g000001 Rmu_sc0011806.1_g000003 Rmu_sc0014304.1_g000001 Rmu_sc0026800.1_g000001 Rmu_ssc0000026.1_g000005
rosa_roxburghii	Rroxscaffold_1G00047290 Rroxscaffold_5G00349170 Rroxscaffold_7G00169450
rosa_rugosa	Rorug02G0307300
rosa_samantha	Rh1CG170200 Rh2BG294200 Rh2BG331900 Rh2CG478300 Rh2CG514100 Rh3DG332200 Rh4BG389200 Rh4CG173800 Rh5CG378500 Rh7AG370300 Rh7AG371300 Rh7BG367300 Rh7CG389100 Rh7CG389900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	284
AasI	GACNNNNNNGTC	1 cut(s)	715
AciI	CCGC	3 cut(s)	16, 632, 866
AclWI	GGATC	3 cut(s)	396, 915, 1050
AcsI	RAATTY	1 cut(s)	668
AfaI	GTAC	3 cut(s)	693, 957, 1063
AfiI	CCNNNNNNNGG	1 cut(s)	465
AgsI	TTSAA	2 cut(s)	581, 805
AhlI	ACTAGT	1 cut(s)	734
AluBI	AGCT	6 cut(s)	13, 136, 253, 267, 767, 970
AluI	AGCT	6 cut(s)	13, 136, 253, 267, 767, 970
Alw26I	GTCTC	1 cut(s)	194
AlwI	GGATC	3 cut(s)	396, 915, 1050
AlwNI	CAGNNNCTG	2 cut(s)	497, 647
AoxI	GGCC	2 cut(s)	393, 939
ApeKI	GCWGC	3 cut(s)	13, 28, 1180
ApoI	RAATTY	1 cut(s)	668
Asp700I	GAANNNNTTC	1 cut(s)	1056
AspS9I	GGNCC	1 cut(s)	277
AsuHPI	GGTGA	2 cut(s)	120, 385
AvaII	GGWCC	1 cut(s)	277
AxyI	CCTNAGG	1 cut(s)	788
BbvI	GCAGC	2 cut(s)	15, 1192
BccI	CCATC	3 cut(s)	311, 404, 973
BceAI	ACGGC	1 cut(s)	237
BclI	TGATCA	2 cut(s)	769, 1093
BcoDI	GTCTC	1 cut(s)	194
BcuI	ACTAGT	1 cut(s)	734
BfaI	CTAG	2 cut(s)	735, 990
BfmI	CTRYAG	3 cut(s)	29, 817, 995
BglII	AGATCT	1 cut(s)	821
BisI	GCNGC	5 cut(s)	14, 17, 29, 633, 1181
BlsI	GCNGC	5 cut(s)	15, 18, 30, 634, 1182
BmcAI	AGTACT	1 cut(s)	957
Bme18I	GGWCC	1 cut(s)	277
BmgT120I	GGNCC	1 cut(s)	277
BmrI	ACTGGG	1 cut(s)	900
BmsI	GCATC	6 cut(s)	205, 445, 1125, 1156, 1183, 1211
BmuI	ACTGGG	1 cut(s)	900
BplI	GAGNNNNNCTC	4 cut(s)	539, 571, 541, 573
BpuEI	CTTGAG	3 cut(s)	333, 416, 1062
Bsa29I	ATCGAT	1 cut(s)	1045
BsaJI	CCNNGG	4 cut(s)	219, 273, 447, 942
Bsc4I	CCNNNNNNNGG	1 cut(s)	465
Bse1I	ACTGG	2 cut(s)	502, 895
Bse21I	CCTNAGG	1 cut(s)	788
Bse3DI	GCAATG	1 cut(s)	531
BseCI	ATCGAT	1 cut(s)	1045
BseDI	CCNNGG	4 cut(s)	219, 273, 447, 942
BseGI	GGATG	7 cut(s)	220, 269, 457, 579, 900, 1159, 1198
BseLI	CCNNNNNNNGG	1 cut(s)	465
BseMI	GCAATG	1 cut(s)	531
BseMII	CTCAG	4 cut(s)	134, 372, 654, 779
BseNI	ACTGG	2 cut(s)	502, 895
BseRI	GAGGAG	1 cut(s)	521
BseXI	GCAGC	2 cut(s)	15, 1192
BsgI	GTGCAG	1 cut(s)	401
BshFI	GGCC	2 cut(s)	395, 941
BshVI	ATCGAT	1 cut(s)	1045
BsiSI	CCGG	1 cut(s)	212
BslI	CCNNNNNNNGG	1 cut(s)	465
BsmAI	GTCTC	1 cut(s)	194
BsmI	GAATGC	3 cut(s)	187, 726, 1056
BsnI	GGCC	2 cut(s)	395, 941
Bsp143I	GATC	9 cut(s)	144, 388, 604, 769, 821, 920, 1042, 1046, 1093
Bsp19I	CCATGG	1 cut(s)	273
BspACI	CCGC	3 cut(s)	16, 632, 866
BspANI	GGCC	2 cut(s)	395, 941
BspCNI	CTCAG	4 cut(s)	133, 373, 653, 780
BspDI	ATCGAT	1 cut(s)	1045
BspMAI	CTGCAG	1 cut(s)	33
BspPI	GGATC	3 cut(s)	396, 915, 1050
BsrDI	GCAATG	1 cut(s)	531
BsrI	ACTGG	2 cut(s)	502, 895
BssECI	CCNNGG	4 cut(s)	219, 273, 447, 942
BssMI	GATC	9 cut(s)	144, 388, 604, 769, 821, 920, 1042, 1046, 1093
BssT1I	CCWWGG	3 cut(s)	273, 447, 942
Bst4CI	ACNGT	3 cut(s)	197, 863, 960
Bst6I	CTCTTC	3 cut(s)	84, 222, 399
BstC8I	GCNNGC	2 cut(s)	33, 846
BstDEI	CTNAG	4 cut(s)	120, 381, 640, 788
BstDSI	CCRYGG	2 cut(s)	219, 273
BstEII	GGTNACC	1 cut(s)	373
BstF5I	GGATG	7 cut(s)	220, 269, 457, 579, 900, 1159, 1198
BstKTI	GATC	9 cut(s)	147, 391, 607, 772, 824, 923, 1045, 1049, 1096
BstMAI	GTCTC	1 cut(s)	194
BstMBI	GATC	9 cut(s)	144, 388, 604, 769, 821, 920, 1042, 1046, 1093
BstMWI	GCNNNNNNNGC	4 cut(s)	25, 264, 344, 632
BstNSI	RCATGY	2 cut(s)	364, 848
BstPI	GGTNACC	1 cut(s)	373
BstSFI	CTRYAG	3 cut(s)	29, 817, 995
BstV1I	GCAGC	2 cut(s)	15, 1192
BstX2I	RGATCY	1 cut(s)	821
BstXI	CCANNNNNNTGG	1 cut(s)	385
BstYI	RGATCY	1 cut(s)	821
Bsu15I	ATCGAT	1 cut(s)	1045
Bsu36I	CCTNAGG	1 cut(s)	788
BsuRI	GGCC	2 cut(s)	395, 941
BsuTUI	ATCGAT	1 cut(s)	1045
BtgI	CCRYGG	2 cut(s)	219, 273
BtgZI	GCGATG	1 cut(s)	50
BtsCI	GGATG	7 cut(s)	220, 269, 457, 579, 900, 1159, 1198
BtsIMutI	CAGTG	2 cut(s)	378, 868
Cac8I	GCNNGC	2 cut(s)	33, 846
CaiI	CAGNNNCTG	2 cut(s)	497, 647
Cfr13I	GGNCC	1 cut(s)	277
ClaI	ATCGAT	1 cut(s)	1045
CseI	GACGC	1 cut(s)	732
Csp6I	GTAC	3 cut(s)	692, 956, 1062
CviAII	CATG	6 cut(s)	148, 274, 334, 361, 845, 1118
CviQI	GTAC	3 cut(s)	692, 956, 1062
DdeI	CTNAG	4 cut(s)	120, 381, 640, 788
DpnI	GATC	9 cut(s)	146, 390, 606, 771, 823, 922, 1044, 1048, 1095
DpnII	GATC	9 cut(s)	144, 388, 604, 769, 821, 920, 1042, 1046, 1093
DraI	TTTAAA	1 cut(s)	538
DrdI	GACNNNNNNGTC	1 cut(s)	715
DseDI	GACNNNNNNGTC	1 cut(s)	715
Eam1104I	CTCTTC	3 cut(s)	84, 222, 399
EarI	CTCTTC	3 cut(s)	84, 222, 399
Eco130I	CCWWGG	3 cut(s)	273, 447, 942
Eco47I	GGWCC	1 cut(s)	277
Eco81I	CCTNAGG	1 cut(s)	788
Eco91I	GGTNACC	1 cut(s)	373
EcoO65I	GGTNACC	1 cut(s)	373
EcoT14I	CCWWGG	3 cut(s)	273, 447, 942
ErhI	CCWWGG	3 cut(s)	273, 447, 942
FaeI	CATG	6 cut(s)	151, 277, 337, 364, 848, 1121
FalI	AAGNNNNNCTT	4 cut(s)	169, 201, 348, 380
FatI	CATG	6 cut(s)	147, 273, 333, 360, 844, 1117
FauNDI	CATATG	1 cut(s)	930
FbaI	TGATCA	2 cut(s)	769, 1093
Fnu4HI	GCNGC	5 cut(s)	14, 17, 29, 633, 1181
FokI	GGATG	7 cut(s)	227, 256, 464, 586, 907, 1166, 1205
Fsp4HI	GCNGC	5 cut(s)	14, 17, 29, 633, 1181
FspBI	CTAG	2 cut(s)	735, 990
GluI	GCNGC	5 cut(s)	14, 17, 29, 633, 1181
HaeIII	GGCC	2 cut(s)	395, 941
HapII	CCGG	1 cut(s)	212
HgaI	GACGC	1 cut(s)	732
Hin1II	CATG	6 cut(s)	151, 277, 337, 364, 848, 1121
HindIII	AAGCTT	1 cut(s)	134
HinfI	GANTC	5 cut(s)	341, 436, 552, 599, 1147
HpaII	CCGG	1 cut(s)	212
HphI	GGTGA	2 cut(s)	120, 385
Hpy166II	GTNNAC	1 cut(s)	784
Hpy188I	TCNGA	2 cut(s)	604, 1051
Hpy188III	TCNNGA	5 cut(s)	350, 433, 720, 990, 1151
Hpy8I	GTNNAC	1 cut(s)	784
HpyCH4III	ACNGT	3 cut(s)	197, 863, 960
HpyF10VI	GCNNNNNNNGC	4 cut(s)	25, 264, 344, 632
HpyF3I	CTNAG	4 cut(s)	120, 381, 640, 788
Hsp92II	CATG	6 cut(s)	151, 277, 337, 364, 848, 1121
Ksp22I	TGATCA	2 cut(s)	769, 1093
Kzo9I	GATC	9 cut(s)	144, 388, 604, 769, 821, 920, 1042, 1046, 1093
LmnI	GCTCC	2 cut(s)	151, 250
Lsp1109I	GCAGC	2 cut(s)	15, 1192
LweI	GCATC	6 cut(s)	205, 445, 1125, 1156, 1183, 1211
MaeI	CTAG	2 cut(s)	735, 990
MaeIII	GTNAC	4 cut(s)	327, 373, 706, 1087
MalI	GATC	9 cut(s)	146, 390, 606, 771, 823, 922, 1044, 1048, 1095
MboI	GATC	9 cut(s)	144, 388, 604, 769, 821, 920, 1042, 1046, 1093
MboII	GAAGA	7 cut(s)	71, 80, 87, 239, 416, 809, 1206
MflI	RGATCY	1 cut(s)	821
MluCI	AATT	4 cut(s)	45, 261, 668, 807
MlyI	GAGTC	2 cut(s)	430, 608
MmeI	TCCRAC	3 cut(s)	366, 567, 911
MroXI	GAANNNNTTC	1 cut(s)	1056
MseI	TTAA	7 cut(s)	48, 141, 293, 537, 609, 666, 951
MslI	CAYNNNNRTG	1 cut(s)	735
MspA1I	CMGCKG	1 cut(s)	13
MspI	CCGG	1 cut(s)	212
Mva1269I	GAATGC	3 cut(s)	187, 726, 1056
MwoI	GCNNNNNNNGC	4 cut(s)	25, 264, 344, 632
NcoI	CCATGG	1 cut(s)	273
NdeI	CATATG	1 cut(s)	930
NdeII	GATC	9 cut(s)	144, 388, 604, 769, 821, 920, 1042, 1046, 1093
NlaIII	CATG	6 cut(s)	151, 277, 337, 364, 848, 1121
NmuCI	GTSAC	3 cut(s)	327, 373, 706
NspI	RCATGY	2 cut(s)	364, 848
PaeI	GCATGC	1 cut(s)	848
PctI	GAATGC	3 cut(s)	187, 726, 1056
PdmI	GAANNNNTTC	1 cut(s)	1056
PfeI	GAWTC	3 cut(s)	341, 552, 1147
PkrI	GCNGC	5 cut(s)	15, 18, 30, 634, 1182
PleI	GAGTC	2 cut(s)	430, 607
PpsI	GAGTC	2 cut(s)	430, 607
PsiI	TTATAA	1 cut(s)	284
PspEI	GGTNACC	1 cut(s)	373
PspPI	GGNCC	1 cut(s)	277
PsrI	GAACNNNNNNTAC	2 cut(s)	684, 716
PstI	CTGCAG	1 cut(s)	33
PstNI	CAGNNNCTG	2 cut(s)	497, 647
PsuI	RGATCY	1 cut(s)	821
PvuII	CAGCTG	1 cut(s)	13
RsaI	GTAC	3 cut(s)	693, 957, 1063
RsaNI	GTAC	3 cut(s)	692, 956, 1062
RseI	CAYNNNNRTG	1 cut(s)	735
SaqAI	TTAA	7 cut(s)	48, 141, 293, 537, 609, 666, 951
SatI	GCNGC	5 cut(s)	14, 17, 29, 633, 1181
Sau3AI	GATC	9 cut(s)	144, 388, 604, 769, 821, 920, 1042, 1046, 1093
Sau96I	GGNCC	1 cut(s)	277
ScaI	AGTACT	1 cut(s)	957
SchI	GAGTC	2 cut(s)	430, 608
SfaNI	GCATC	6 cut(s)	205, 445, 1125, 1156, 1183, 1211
SfcI	CTRYAG	3 cut(s)	29, 817, 995
SinI	GGWCC	1 cut(s)	277
SmiMI	CAYNNNNRTG	1 cut(s)	735
SmlI	CTYRAG	3 cut(s)	348, 431, 1077
SmoI	CTYRAG	3 cut(s)	348, 431, 1077
SpeI	ACTAGT	1 cut(s)	734
SphI	GCATGC	1 cut(s)	848
Sse9I	AATT	4 cut(s)	45, 261, 668, 807
SsiI	CCGC	3 cut(s)	16, 632, 866
SspMI	CTAG	2 cut(s)	735, 990
StyI	CCWWGG	3 cut(s)	273, 447, 942
TaaI	ACNGT	3 cut(s)	197, 863, 960
TaqI	TCGA	3 cut(s)	171, 1018, 1045
TaqII	GACCGA	1 cut(s)	996
TasI	AATT	4 cut(s)	45, 261, 668, 807
TatI	WGTACW	2 cut(s)	691, 955
TauI	GCSGC	2 cut(s)	19, 635
TfiI	GAWTC	3 cut(s)	341, 552, 1147
Tru1I	TTAA	7 cut(s)	48, 141, 293, 537, 609, 666, 951
Tru9I	TTAA	7 cut(s)	48, 141, 293, 537, 609, 666, 951
TscAI	CASTG	2 cut(s)	385, 868
TseFI	GTSAC	3 cut(s)	327, 373, 706
TseI	GCWGC	3 cut(s)	13, 28, 1180
Tsp45I	GTSAC	3 cut(s)	327, 373, 706
TspDTI	ATGAA	4 cut(s)	53, 719, 930, 947
TspRI	CASTG	2 cut(s)	385, 868
VpaK11BI	GGWCC	1 cut(s)	277
XapI	RAATTY	1 cut(s)	668
XbaI	TCTAGA	1 cut(s)	989
XceI	RCATGY	2 cut(s)	364, 848
XmnI	GAANNNNTTC	1 cut(s)	1056
XspI	CTAG	2 cut(s)	735, 990
ZrmI	AGTACT	1 cut(s)	957

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.