Rmu_sc0009365.1_g000011

zinc-binding in reverse transcriptase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009365.1
OG0005205
Physical Location & Seq
Forward (+)
64150 .. 64559
410 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009365.1_g000011.1.cds

Sequence Viewer

Length: 363 bp
atggactgtgattttactcatgttattatgggagctcatgggtggctgcagaattatctccgggctaattgtcctccagttttgattggttgtcgtcggtccaaatggggggatgtgggagttgtttctcgtgacagcaatggtgtatgcttagcaggtcgggctaagtatgttcaaagagctttttcagctaagcatgttgaagtattggcagggtttgaagctttagaattggcacaggagttgggcgtacaggtggtgcagtttgagtcgaattgtcaggcattggttgacttagttgtcaggcaccacaaacaaccaagttcggataatatcattgtctgtcagtcgtgggttggttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

120

Amino Acids

13.24

Weight (kDa)

6.94

Isoelectric Point (pI)

44.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 299
Acc36I ACCTGC 1 cut(s) 146
AccB1I GGYRCC 1 cut(s) 306
AfaI GTAC 1 cut(s) 252
AfiI CCNNNNNNNGG 1 cut(s) 108
AgsI TTSAA 3 cut(s) 176, 203, 221
AluBI AGCT 4 cut(s) 35, 182, 191, 224
AluI AGCT 4 cut(s) 35, 182, 191, 224
Alw21I GWGCWC 1 cut(s) 37
ApeKI GCWGC 1 cut(s) 46
AspS9I GGNCC 1 cut(s) 99
AsuC2I CCSGG 1 cut(s) 62
AvaII GGWCC 1 cut(s) 99
BanI GGYRCC 1 cut(s) 306
BanII GRGCYC 1 cut(s) 37
BauI CACGAG 1 cut(s) 129
Bbv12I GWGCWC 1 cut(s) 37
BbvI GCAGC 1 cut(s) 33
BcnI CCSGG 1 cut(s) 62
BfmI CTRYAG 1 cut(s) 47
BfuAI ACCTGC 1 cut(s) 146
BisI GCNGC 1 cut(s) 47
BlpI GCTNAGC 2 cut(s) 151, 192
BlsI GCNGC 1 cut(s) 48
Bme1390I CCNGG 1 cut(s) 62
Bme18I GGWCC 1 cut(s) 99
BmgT120I GGNCC 1 cut(s) 99
BmiI GGNNCC 1 cut(s) 308
BmrFI CCNGG 1 cut(s) 62
BpmI CTGGAG 1 cut(s) 60
Bpu1102I GCTNAGC 2 cut(s) 151, 192
BpuMI CCSGG 1 cut(s) 62
Bsc4I CCNNNNNNNGG 1 cut(s) 108
Bse1I ACTGG 1 cut(s) 77
Bse3DI GCAATG 1 cut(s) 145
BseGI GGATG 1 cut(s) 118
BseLI CCNNNNNNNGG 1 cut(s) 108
BseMI GCAATG 1 cut(s) 145
BseNI ACTGG 1 cut(s) 77
BseXI GCAGC 1 cut(s) 33
BsgI GTGCAG 1 cut(s) 281
BshNI GGYRCC 1 cut(s) 306
BsiHKAI GWGCWC 1 cut(s) 37
BsiSI CCGG 1 cut(s) 61
BslI CCNNNNNNNGG 1 cut(s) 108
Bsp1286I GDGCHC 1 cut(s) 37
Bsp1720I GCTNAGC 2 cut(s) 151, 192
BspLI GGNNCC 1 cut(s) 308
BspMAI CTGCAG 1 cut(s) 51
BspMI ACCTGC 1 cut(s) 146
BspT107I GGYRCC 1 cut(s) 306
BsrDI GCAATG 1 cut(s) 145
BsrI ACTGG 1 cut(s) 77
BssSI CACGAG 1 cut(s) 129
Bst2BI CACGAG 1 cut(s) 129
Bst4CI ACNGT 1 cut(s) 8
BstDEI CTNAG 4 cut(s) 151, 165, 192, 295
BstF5I GGATG 1 cut(s) 118
BstMWI GCNNNNNNNGC 2 cut(s) 161, 188
BstNSI RCATGY 1 cut(s) 200
BstSCI CCNGG 1 cut(s) 60
BstSFI CTRYAG 1 cut(s) 47
BstV1I GCAGC 1 cut(s) 33
BtsCI GGATG 1 cut(s) 118
BveI ACCTGC 1 cut(s) 146
Cfr13I GGNCC 1 cut(s) 99
Csp6I GTAC 1 cut(s) 251
CviAII CATG 3 cut(s) 20, 38, 197
CviJI RGCY 7 cut(s) 35, 46, 65, 164, 182, 191, 224
CviKI_1 RGCY 7 cut(s) 35, 46, 65, 164, 182, 191, 224
CviQI GTAC 1 cut(s) 251
DdeI CTNAG 4 cut(s) 151, 165, 192, 295
DrdI GACNNNNNNGTC 1 cut(s) 299
DseDI GACNNNNNNGTC 1 cut(s) 299
Ecl136II GAGCTC 1 cut(s) 35
Eco24I GRGCYC 1 cut(s) 37
Eco47I GGWCC 1 cut(s) 99
Eco53kI GAGCTC 1 cut(s) 35
EcoICRI GAGCTC 1 cut(s) 35
EcoT38I GRGCYC 1 cut(s) 37
FaeI CATG 3 cut(s) 23, 41, 200
FaiI YATR 6 cut(s) 21, 29, 39, 148, 171, 198
FatI CATG 3 cut(s) 19, 37, 196
Fnu4HI GCNGC 1 cut(s) 47
FokI GGATG 1 cut(s) 125
FriOI GRGCYC 1 cut(s) 37
Fsp4HI GCNGC 1 cut(s) 47
GluI GCNGC 1 cut(s) 47
GsuI CTGGAG 1 cut(s) 60
HapII CCGG 1 cut(s) 61
Hin1II CATG 3 cut(s) 23, 41, 200
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HindIII AAGCTT 1 cut(s) 222
HinfI GANTC 1 cut(s) 269
HpaII CCGG 1 cut(s) 61
Hpy166II GTNNAC 1 cut(s) 292
Hpy188I TCNGA 1 cut(s) 328
Hpy188III TCNNGA 1 cut(s) 131
Hpy8I GTNNAC 1 cut(s) 292
Hpy99I CGWCG 1 cut(s) 99
HpyCH4III ACNGT 1 cut(s) 8
HpyCH4V TGCA 2 cut(s) 49, 262
HpyF10VI GCNNNNNNNGC 2 cut(s) 161, 188
HpyF3I CTNAG 4 cut(s) 151, 165, 192, 295
Hsp92II CATG 3 cut(s) 23, 41, 200
LmnI GCTCC 1 cut(s) 32
LpnPI CCDG 8 cut(s) 74, 90, 141, 198, 224, 239, 266, 289
Lsp1109I GCAGC 1 cut(s) 33
MaeIII GTNAC 1 cut(s) 131
MhlI GDGCHC 1 cut(s) 37
MluCI AATT 4 cut(s) 52, 67, 230, 274
MlyI GAGTC 1 cut(s) 278
MnlI CCTC 1 cut(s) 84
MspI CCGG 1 cut(s) 61
MspR9I CCNGG 1 cut(s) 62
MwoI GCNNNNNNNGC 2 cut(s) 161, 188
NciI CCSGG 1 cut(s) 62
NlaIII CATG 3 cut(s) 23, 41, 200
NlaIV GGNNCC 1 cut(s) 308
NmuCI GTSAC 1 cut(s) 131
NspI RCATGY 1 cut(s) 200
PkrI GCNGC 1 cut(s) 48
PleI GAGTC 1 cut(s) 277
PpsI GAGTC 1 cut(s) 277
Psp124BI GAGCTC 1 cut(s) 37
PspN4I GGNNCC 1 cut(s) 308
PspPI GGNCC 1 cut(s) 99
PstI CTGCAG 1 cut(s) 51
RsaI GTAC 1 cut(s) 252
RsaNI GTAC 1 cut(s) 251
SacI GAGCTC 1 cut(s) 37
SatI GCNGC 1 cut(s) 47
Sau96I GGNCC 1 cut(s) 99
SchI GAGTC 1 cut(s) 278
ScrFI CCNGG 1 cut(s) 62
SduI GDGCHC 1 cut(s) 37
SetI ASST 6 cut(s) 37, 160, 184, 193, 226, 258
SfcI CTRYAG 1 cut(s) 47
SinI GGWCC 1 cut(s) 99
Sse9I AATT 4 cut(s) 52, 67, 230, 274
SstI GAGCTC 1 cut(s) 37
StyD4I CCNGG 1 cut(s) 60
TaaI ACNGT 1 cut(s) 8
TaqI TCGA 1 cut(s) 272
TaqII GACCGA 1 cut(s) 87
TasI AATT 4 cut(s) 52, 67, 230, 274
TseFI GTSAC 1 cut(s) 131
TseI GCWGC 1 cut(s) 46
Tsp45I GTSAC 1 cut(s) 131
VpaK11BI GGWCC 1 cut(s) 99
XceI RCATGY 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.