Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0005205

Physical Location & Seq

Genomic Coordinates Forward (+)

10087507 .. 10090520

Gene Structure 3014 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00169450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGCTTTGCCGAATCAGCAGACCGTGGAGTACCCGAGCTTCAAGCTCGTCATCGTTGGGGATGGTGGAACAGGGAAAACAACCTTTGTGAAGAGACATCTTACTGGTGAATTTGAGAAGAAATATGAACCTACCATTGGTGTTGAGGTCCATCCATTGGACTTTTTCACCAACTGTGGAAAAATTCGTTTCTACTGTTGGGACACTGCTGGGCAAGAGAAATTTGGTGGTCTTAGAGATGGATACTATATCCATGGGCAATGTGCAATTATCATGTTTGATGTTATGTTTGATGTTACTGCCAGGGATCGATTACCCGGAAAAATTTCTTCATTTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000054 GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005794 GO:0006403 GO:0006405 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0010035 GO:0010038 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017038 GO:0017076 GO:0017111 GO:0019001 GO:0022613 GO:0031503 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0033036 GO:0033365 GO:0033750 GO:0034504 GO:0034613 GO:0035639 GO:0036094 GO:0042221 GO:0042254 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046686 GO:0046907 GO:0050657 GO:0050658 GO:0050896 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 ko05166 ko05169 map03008 map03013 map05166 map05169

Pfam Domains

Protein Families

Ras

Protein Analysis

113

Amino Acids

12.78

Weight (kDa)

6.81

Isoelectric Point (pI)

23.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	13 - 96	2.3e-09	ADP-ribosylation factor family
Ras	PF00071	15 - 96	3.2e-24	Ras family
Roc	PF08477	15 - 95	3.9e-22	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005205)

Species	Orthologous Gene IDs
malus_domestica	MD07G1185800.v1.1
rosa_chinensis	RchiOBHm_Chr1g0327941
rosa_laevigata	RLG00000018282
rosa_multiflora	Rmu_co8368975.1_g000001 Rmu_sc0002900.1_g000003 Rmu_sc0003410.1_g000003 Rmu_sc0009365.1_g000011 Rmu_sc0011124.1_g000001 Rmu_sc0011806.1_g000003 Rmu_sc0014304.1_g000001 Rmu_sc0026800.1_g000001 Rmu_ssc0000026.1_g000005
rosa_roxburghii	Rroxscaffold_1G00047290 Rroxscaffold_5G00349170 Rroxscaffold_7G00169450
rosa_rugosa	Rorug02G0307300
rosa_samantha	Rh1CG170200 Rh2BG294200 Rh2BG331900 Rh2CG478300 Rh2CG514100 Rh3DG332200 Rh4BG389200 Rh4CG173800 Rh5CG378500 Rh7AG370300 Rh7AG371300 Rh7BG367300 Rh7CG389100 Rh7CG389900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	157
AclWI	GGATC	1 cut(s)	315
AcsI	RAATTY	4 cut(s)	110, 183, 221, 324
AfaI	GTAC	1 cut(s)	32
AfiI	CCNNNNNNNGG	2 cut(s)	137, 157
AgsI	TTSAA	1 cut(s)	43
AjnI	CCWGG	1 cut(s)	302
AjuI	GAANNNNNNNTTGG	2 cut(s)	120, 152
AluBI	AGCT	2 cut(s)	39, 46
AluI	AGCT	2 cut(s)	39, 46
Alw26I	GTCTC	1 cut(s)	88
AlwI	GGATC	1 cut(s)	315
Ama87I	CYCGRG	1 cut(s)	34
ApoI	RAATTY	4 cut(s)	110, 183, 221, 324
Asp700I	GAANNNNTTC	1 cut(s)	325
AspS9I	GGNCC	1 cut(s)	148
AsuC2I	CCSGG	1 cut(s)	318
AsuHPI	GGTGA	2 cut(s)	119, 160
AvaI	CYCGRG	1 cut(s)	34
AvaII	GGWCC	1 cut(s)	148
BarI	GAAGNNNNNNTAC	2 cut(s)	23, 55
BccI	CCATC	3 cut(s)	56, 159, 233
BciT130I	CCWGG	1 cut(s)	304
BciVI	GTATCC	1 cut(s)	236
BcnI	CCSGG	1 cut(s)	318
BcoDI	GTCTC	1 cut(s)	88
BfuI	GTATCC	1 cut(s)	236
Bme1390I	CCNGG	2 cut(s)	304, 318
Bme18I	GGWCC	1 cut(s)	148
BmeT110I	CYCGRG	1 cut(s)	34
BmgT120I	GGNCC	1 cut(s)	148
BmrFI	CCNGG	2 cut(s)	304, 318
BpuMI	CCSGG	1 cut(s)	318
Bsa29I	ATCGAT	1 cut(s)	310
BsaJI	CCNNGG	3 cut(s)	24, 253, 303
Bsc4I	CCNNNNNNNGG	2 cut(s)	137, 157
Bse1I	ACTGG	1 cut(s)	109
Bse3DI	GCAATG	1 cut(s)	266
BseBI	CCWGG	1 cut(s)	304
BseCI	ATCGAT	1 cut(s)	310
BseDI	CCNNGG	3 cut(s)	24, 253, 303
BseGI	GGATG	2 cut(s)	67, 151
BseLI	CCNNNNNNNGG	2 cut(s)	137, 157
BseMI	GCAATG	1 cut(s)	266
BseNI	ACTGG	1 cut(s)	109
BseYI	CCCAGC	1 cut(s)	209
BshVI	ATCGAT	1 cut(s)	310
BsiHKCI	CYCGRG	1 cut(s)	34
BsiSI	CCGG	1 cut(s)	318
BslFI	GGGAC	1 cut(s)	215
BslI	CCNNNNNNNGG	2 cut(s)	137, 157
BsmAI	GTCTC	1 cut(s)	88
BsmFI	GGGAC	1 cut(s)	215
BsoBI	CYCGRG	1 cut(s)	34
Bsp143I	GATC	1 cut(s)	307
Bsp19I	CCATGG	1 cut(s)	253
BspDI	ATCGAT	1 cut(s)	310
BspPI	GGATC	1 cut(s)	315
BsrDI	GCAATG	1 cut(s)	266
BsrI	ACTGG	1 cut(s)	109
BssECI	CCNNGG	3 cut(s)	24, 253, 303
BssMI	GATC	1 cut(s)	307
BssT1I	CCWWGG	1 cut(s)	253
Bst2UI	CCWGG	1 cut(s)	304
Bst4CI	ACNGT	3 cut(s)	25, 176, 197
Bst6I	CTCTTC	1 cut(s)	86
BstDEI	CTNAG	1 cut(s)	233
BstDSI	CCRYGG	2 cut(s)	24, 253
BstF5I	GGATG	2 cut(s)	67, 151
BstKTI	GATC	1 cut(s)	310
BstMAI	GTCTC	1 cut(s)	88
BstMBI	GATC	1 cut(s)	307
BstMWI	GCNNNNNNNGC	1 cut(s)	16
BstNI	CCWGG	1 cut(s)	304
BstSCI	CCNGG	2 cut(s)	302, 316
Bsu15I	ATCGAT	1 cut(s)	310
BsuI	GTATCC	1 cut(s)	236
BsuTUI	ATCGAT	1 cut(s)	310
BtgI	CCRYGG	2 cut(s)	24, 253
BtsCI	GGATG	2 cut(s)	67, 151
BtsI	GCAGTG	1 cut(s)	204
BtsIMutI	CAGTG	1 cut(s)	204
Cfr13I	GGNCC	1 cut(s)	148
ClaI	ATCGAT	1 cut(s)	310
Csp6I	GTAC	1 cut(s)	31
CviAII	CATG	2 cut(s)	254, 274
CviJI	RGCY	3 cut(s)	5, 39, 46
CviKI_1	RGCY	3 cut(s)	5, 39, 46
CviQI	GTAC	1 cut(s)	31
DdeI	CTNAG	1 cut(s)	233
DpnI	GATC	1 cut(s)	309
DpnII	GATC	1 cut(s)	307
Eam1104I	CTCTTC	1 cut(s)	86
EarI	CTCTTC	1 cut(s)	86
Eco130I	CCWWGG	1 cut(s)	253
Eco47I	GGWCC	1 cut(s)	148
Eco88I	CYCGRG	1 cut(s)	34
EcoRII	CCWGG	1 cut(s)	302
EcoT14I	CCWWGG	1 cut(s)	253
ErhI	CCWWGG	1 cut(s)	253
FaeI	CATG	2 cut(s)	257, 277
FaiI	YATR	5 cut(s)	126, 249, 255, 275, 287
FaqI	GGGAC	1 cut(s)	215
FatI	CATG	2 cut(s)	253, 273
FokI	GGATG	2 cut(s)	74, 138
GsaI	CCCAGC	1 cut(s)	213
HapII	CCGG	1 cut(s)	318
Hin1II	CATG	2 cut(s)	257, 277
HinfI	GANTC	1 cut(s)	13
HpaII	CCGG	1 cut(s)	318
HphI	GGTGA	2 cut(s)	119, 160
HpyCH4III	ACNGT	3 cut(s)	25, 176, 197
HpyCH4V	TGCA	1 cut(s)	266
HpyF10VI	GCNNNNNNNGC	1 cut(s)	16
HpyF3I	CTNAG	1 cut(s)	233
Hsp92II	CATG	2 cut(s)	257, 277
Kzo9I	GATC	1 cut(s)	307
LpnPI	CCDG	6 cut(s)	57, 90, 195, 289, 316, 331
MaeIII	GTNAC	1 cut(s)	295
MalI	GATC	1 cut(s)	309
MboI	GATC	1 cut(s)	307
MboII	GAAGA	3 cut(s)	103, 130, 321
MluCI	AATT	5 cut(s)	110, 183, 221, 267, 324
MnlI	CCTC	1 cut(s)	139
MroXI	GAANNNNTTC	1 cut(s)	325
MspI	CCGG	1 cut(s)	318
MspR9I	CCNGG	2 cut(s)	304, 318
MvaI	CCWGG	1 cut(s)	304
MwoI	GCNNNNNNNGC	1 cut(s)	16
NciI	CCSGG	1 cut(s)	318
NcoI	CCATGG	1 cut(s)	253
NdeII	GATC	1 cut(s)	307
NlaIII	CATG	2 cut(s)	257, 277
PdmI	GAANNNNTTC	1 cut(s)	325
PfeI	GAWTC	1 cut(s)	13
PflMI	CCANNNNNTGG	1 cut(s)	157
Psp6I	CCWGG	1 cut(s)	302
PspFI	CCCAGC	1 cut(s)	209
PspGI	CCWGG	1 cut(s)	302
PspPI	GGNCC	1 cut(s)	148
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
Sau3AI	GATC	1 cut(s)	307
Sau96I	GGNCC	1 cut(s)	148
ScrFI	CCNGG	2 cut(s)	304, 318
SetI	ASST	5 cut(s)	41, 48, 86, 133, 150
SinI	GGWCC	1 cut(s)	148
Sse9I	AATT	5 cut(s)	110, 183, 221, 267, 324
StyD4I	CCNGG	2 cut(s)	302, 316
StyI	CCWWGG	1 cut(s)	253
TaaI	ACNGT	3 cut(s)	25, 176, 197
TaqI	TCGA	1 cut(s)	310
TasI	AATT	5 cut(s)	110, 183, 221, 267, 324
TfiI	GAWTC	1 cut(s)	13
TscAI	CASTG	1 cut(s)	211
TspDTI	ATGAA	2 cut(s)	141, 321
TspRI	CASTG	1 cut(s)	211
Van91I	CCANNNNNTGG	1 cut(s)	157
VpaK11BI	GGWCC	1 cut(s)	148
XapI	RAATTY	4 cut(s)	110, 183, 221, 324
XmnI	GAANNNNTTC	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.