Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000026.1

Orthogroup ID

OG0005205

Physical Location & Seq

Genomic Coordinates Reverse (-)

6811 .. 7428

Gene Structure 618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000026.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

atggagattctatcatggaatatcaggggcaccaaagaccctaagaaattcagggctttggcgtcgattatacaacagagacgtcctagtattgtgttcttgatcgagacaaagtgtagagacaagcaagcgttcgaacggttgcgcaacgatttgggtttctgtcatggcataatgcaagagtgttctgaaacgggtttttatgggcatccagatgctcatctacgctctgtgtcatgggatttgttacgtctgcttgccttcatgccaggttctcctaattggttggtggttggtgatctaaatgaaatcatcagctcgagggagaaatcaggaggaggtcttcgtccctcaagacaaatatatgcgttccaaacagtgttggatgactgtgctcttacagatttagggtttgagggcagcctattcacatggcataattcggagactcaatgcaggttagaccttgcagttgccacgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-RVT

Protein Analysis

160

Amino Acids

18.18

Weight (kDa)

6.89

Isoelectric Point (pI)

57.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005205)

Species	Orthologous Gene IDs
malus_domestica	MD07G1185800.v1.1
rosa_chinensis	RchiOBHm_Chr1g0327941
rosa_laevigata	RLG00000018282
rosa_multiflora	Rmu_co8368975.1_g000001 Rmu_sc0002900.1_g000003 Rmu_sc0003410.1_g000003 Rmu_sc0009365.1_g000011 Rmu_sc0011124.1_g000001 Rmu_sc0011806.1_g000003 Rmu_sc0014304.1_g000001 Rmu_sc0026800.1_g000001 Rmu_ssc0000026.1_g000005
rosa_roxburghii	Rroxscaffold_1G00047290 Rroxscaffold_5G00349170 Rroxscaffold_7G00169450
rosa_rugosa	Rorug02G0307300
rosa_samantha	Rh1CG170200 Rh2BG294200 Rh2BG331900 Rh2CG478300 Rh2CG514100 Rh3DG332200 Rh4BG389200 Rh4CG173800 Rh5CG378500 Rh7AG370300 Rh7AG371300 Rh7BG367300 Rh7CG389100 Rh7CG389900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	85
Acc16I	TGCGCA	1 cut(s)	146
Acc36I	ACCTGC	1 cut(s)	447
AccB1I	GGYRCC	1 cut(s)	29
AcsI	RAATTY	1 cut(s)	47
AcyI	GRCGYC	2 cut(s)	62, 82
AjnI	CCWGG	1 cut(s)	268
AluBI	AGCT	1 cut(s)	318
AluI	AGCT	1 cut(s)	318
Alw21I	GWGCWC	1 cut(s)	397
Alw26I	GTCTC	4 cut(s)	73, 101, 114, 440
Ama87I	CYCGRG	1 cut(s)	319
ApeKI	GCWGC	1 cut(s)	420
ApoI	RAATTY	1 cut(s)	47
AspLEI	GCGC	1 cut(s)	147
AsuHPI	GGTGA	1 cut(s)	308
AsuII	TTCGAA	1 cut(s)	135
AvaI	CYCGRG	1 cut(s)	319
BaeGI	GKGCMC	1 cut(s)	32
BanI	GGYRCC	1 cut(s)	29
BbsI	GAAGAC	1 cut(s)	335
Bbv12I	GWGCWC	1 cut(s)	397
BbvI	GCAGC	1 cut(s)	432
BciT130I	CCWGG	1 cut(s)	270
BcoDI	GTCTC	4 cut(s)	73, 101, 114, 440
BfaI	CTAG	1 cut(s)	87
BfuAI	ACCTGC	1 cut(s)	447
BisI	GCNGC	1 cut(s)	421
BlsI	GCNGC	1 cut(s)	422
Bme1390I	CCNGG	1 cut(s)	270
BmeT110I	CYCGRG	1 cut(s)	319
BmiI	GGNNCC	1 cut(s)	31
BmrFI	CCNGG	1 cut(s)	270
BmsI	GCATC	2 cut(s)	205, 217
BpiI	GAAGAC	1 cut(s)	335
Bpu14I	TTCGAA	1 cut(s)	135
BpuEI	CTTGAG	1 cut(s)	337
BsaAI	YACGTR	1 cut(s)	480
BsaBI	GATNNNNATC	1 cut(s)	219
BsaHI	GRCGYC	2 cut(s)	62, 82
Bse8I	GATNNNNATC	1 cut(s)	219
BseBI	CCWGG	1 cut(s)	270
BseGI	GGATG	2 cut(s)	208, 391
BseJI	GATNNNNATC	1 cut(s)	219
BseRI	GAGGAG	1 cut(s)	351
BseSI	GKGCMC	1 cut(s)	32
BseXI	GCAGC	1 cut(s)	432
BshNI	GGYRCC	1 cut(s)	29
BsiHKAI	GWGCWC	1 cut(s)	397
BsiHKCI	CYCGRG	1 cut(s)	319
BslFI	GGGAC	1 cut(s)	333
BsmAI	GTCTC	4 cut(s)	73, 101, 114, 440
BsmBI	CGTCTC	1 cut(s)	73
BsmFI	GGGAC	1 cut(s)	333
BsoBI	CYCGRG	1 cut(s)	319
Bsp119I	TTCGAA	1 cut(s)	135
Bsp1286I	GDGCHC	2 cut(s)	32, 397
Bsp143I	GATC	2 cut(s)	102, 298
BspLI	GGNNCC	1 cut(s)	31
BspMI	ACCTGC	1 cut(s)	447
BspT104I	TTCGAA	1 cut(s)	135
BspT107I	GGYRCC	1 cut(s)	29
BssMI	GATC	2 cut(s)	102, 298
BssNI	GRCGYC	2 cut(s)	62, 82
Bst2UI	CCWGG	1 cut(s)	270
Bst4CI	ACNGT	3 cut(s)	141, 379, 392
BstACI	GRCGYC	2 cut(s)	62, 82
BstBAI	YACGTR	1 cut(s)	480
BstBI	TTCGAA	1 cut(s)	135
BstC8I	GCNNGC	2 cut(s)	129, 258
BstDEI	CTNAG	1 cut(s)	42
BstF5I	GGATG	2 cut(s)	208, 391
BstHHI	GCGC	1 cut(s)	147
BstKTI	GATC	2 cut(s)	105, 301
BstMAI	GTCTC	4 cut(s)	73, 101, 114, 440
BstMBI	GATC	2 cut(s)	102, 298
BstNI	CCWGG	1 cut(s)	270
BstSCI	CCNGG	1 cut(s)	268
BstSLI	GKGCMC	1 cut(s)	32
BstV1I	GCAGC	1 cut(s)	432
BstV2I	GAAGAC	1 cut(s)	335
BtsCI	GGATG	2 cut(s)	208, 391
BtsIMutI	CAGTG	1 cut(s)	384
BveI	ACCTGC	1 cut(s)	447
Cac8I	GCNNGC	2 cut(s)	129, 258
CfoI	GCGC	1 cut(s)	147
CseI	GACGC	1 cut(s)	51
CviAII	CATG	5 cut(s)	15, 167, 237, 265, 432
CviJI	RGCY	3 cut(s)	56, 318, 423
CviKI_1	RGCY	3 cut(s)	56, 318, 423
DdeI	CTNAG	1 cut(s)	42
DpnI	GATC	2 cut(s)	104, 300
DpnII	GATC	2 cut(s)	102, 298
Eco88I	CYCGRG	1 cut(s)	319
EcoRII	CCWGG	1 cut(s)	268
Esp3I	CGTCTC	1 cut(s)	73
FaeI	CATG	5 cut(s)	18, 170, 240, 268, 435
FaqI	GGGAC	1 cut(s)	333
FatI	CATG	5 cut(s)	14, 166, 236, 264, 431
Fnu4HI	GCNGC	1 cut(s)	421
FokI	GGATG	2 cut(s)	195, 398
Fsp4HI	GCNGC	1 cut(s)	421
FspBI	CTAG	1 cut(s)	87
FspI	TGCGCA	1 cut(s)	146
GlaI	GCGC	1 cut(s)	146
GluI	GCNGC	1 cut(s)	421
HgaI	GACGC	1 cut(s)	51
HhaI	GCGC	1 cut(s)	147
Hin1I	GRCGYC	2 cut(s)	62, 82
Hin1II	CATG	5 cut(s)	18, 170, 240, 268, 435
Hin6I	GCGC	1 cut(s)	145
HinP1I	GCGC	1 cut(s)	145
HinfI	GANTC	2 cut(s)	7, 448
HphI	GGTGA	1 cut(s)	308
Hpy188I	TCNGA	2 cut(s)	190, 445
Hpy188III	TCNNGA	5 cut(s)	100, 106, 212, 333, 354
Hpy99I	CGWCG	1 cut(s)	67
HpyAV	CCTTC	1 cut(s)	271
HpyCH4III	ACNGT	3 cut(s)	141, 379, 392
HpyCH4IV	ACGT	3 cut(s)	82, 250, 479
HpyCH4V	TGCA	3 cut(s)	178, 456, 470
HpyF3I	CTNAG	1 cut(s)	42
HpySE526I	ACGT	3 cut(s)	82, 250, 479
Hsp92I	GRCGYC	2 cut(s)	62, 82
Hsp92II	CATG	5 cut(s)	18, 170, 240, 268, 435
HspAI	GCGC	1 cut(s)	145
Kzo9I	GATC	2 cut(s)	102, 298
LpnPI	CCDG	7 cut(s)	10, 37, 225, 255, 282, 318, 442
Lsp1109I	GCAGC	1 cut(s)	432
LweI	GCATC	2 cut(s)	205, 217
MaeI	CTAG	1 cut(s)	87
MaeII	ACGT	3 cut(s)	82, 250, 479
MaeIII	GTNAC	1 cut(s)	246
MalI	GATC	2 cut(s)	104, 300
MboI	GATC	2 cut(s)	102, 298
MboII	GAAGA	1 cut(s)	335
MhlI	GDGCHC	2 cut(s)	32, 397
MluCI	AATT	3 cut(s)	47, 280, 439
MlyI	GAGTC	1 cut(s)	442
MmeI	TCCRAC	1 cut(s)	363
MnlI	CCTC	5 cut(s)	315, 329, 332, 361, 409
MslI	CAYNNNNRTG	1 cut(s)	213
MspR9I	CCNGG	1 cut(s)	270
MvaI	CCWGG	1 cut(s)	270
NdeII	GATC	2 cut(s)	102, 298
NlaIII	CATG	5 cut(s)	18, 170, 240, 268, 435
NlaIV	GGNNCC	1 cut(s)	31
NsbI	TGCGCA	1 cut(s)	146
NspV	TTCGAA	1 cut(s)	135
PaeR7I	CTCGAG	1 cut(s)	319
PfeI	GAWTC	1 cut(s)	7
PkrI	GCNGC	1 cut(s)	422
PleI	GAGTC	1 cut(s)	442
PpsI	GAGTC	1 cut(s)	442
Ppu21I	YACGTR	1 cut(s)	480
Psp6I	CCWGG	1 cut(s)	268
PspGI	CCWGG	1 cut(s)	268
PspN4I	GGNNCC	1 cut(s)	31
PspXI	VCTCGAGB	1 cut(s)	319
RseI	CAYNNNNRTG	1 cut(s)	213
SatI	GCNGC	1 cut(s)	421
Sau3AI	GATC	2 cut(s)	102, 298
SchI	GAGTC	1 cut(s)	442
ScrFI	CCNGG	1 cut(s)	270
SduI	GDGCHC	2 cut(s)	32, 397
SetI	ASST	8 cut(s)	85, 253, 274, 320, 343, 461, 468, 482
SfaNI	GCATC	2 cut(s)	205, 217
Sfr274I	CTCGAG	1 cut(s)	319
SfuI	TTCGAA	1 cut(s)	135
SlaI	CTCGAG	1 cut(s)	319
SmiMI	CAYNNNNRTG	1 cut(s)	213
SmlI	CTYRAG	2 cut(s)	319, 352
SmoI	CTYRAG	2 cut(s)	319, 352
Sse9I	AATT	3 cut(s)	47, 280, 439
SspMI	CTAG	1 cut(s)	87
StyD4I	CCNGG	1 cut(s)	268
TaaI	ACNGT	3 cut(s)	141, 379, 392
TaiI	ACGT	3 cut(s)	85, 253, 482
TaqI	TCGA	4 cut(s)	65, 105, 135, 320
TasI	AATT	3 cut(s)	47, 280, 439
TfiI	GAWTC	1 cut(s)	7
TscAI	CASTG	1 cut(s)	384
TseI	GCWGC	1 cut(s)	420
TspDTI	ATGAA	2 cut(s)	253, 321
TspRI	CASTG	1 cut(s)	384
XapI	RAATTY	1 cut(s)	47
XhoI	CTCGAG	1 cut(s)	319
XspI	CTAG	1 cut(s)	87
ZraI	GACGTC	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.