Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011806.1

Orthogroup ID

OG0005205

Physical Location & Seq

Genomic Coordinates Forward (+)

11095 .. 12069

Gene Structure 975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011806.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

atggatatagttttctggaatatcaggggcactaaggaccctcgtaagttacaggcgttgtcatccttggtcttccaaaggtgtcctggagtcctatttctgttggagacgaagtgtagtcaagaacgcttcaactcctttcgagctaatctaaggtttcaacatggagtgatgcaggagtgtagcgataatggagggggtggtctgatgctgttatggggtgaggacattgatattcatcttcgctcctattccccgcactttgtggatgcagatgtggtgttgccggcgtctaaagggggtcgttgccggatcactgatttttacgggcatccagagacaacgcaacgtcatgtcacttgggatttactcaggcaacttgccatgcttcccaaggcagataagtggttagtatttgttgacctaaacgaaattctttcctcctctgagaaatctggaggagccgcacatcccctatggcagatcaatgcgttccaagcggctcttgacgaagggggaacccaaaggcttcctaggcccaagataaaccccttcggcgcatgtgaaatgctccaactgtgcattgcagcacagtgcctggccactttgacagcttcgggattcgaacctaagtttggaagcacacccaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-RVT

Protein Analysis

217

Amino Acids

24.21

Weight (kDa)

6.99

Isoelectric Point (pI)

40.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005205)

Species	Orthologous Gene IDs
malus_domestica	MD07G1185800.v1.1
rosa_chinensis	RchiOBHm_Chr1g0327941
rosa_laevigata	RLG00000018282
rosa_multiflora	Rmu_co8368975.1_g000001 Rmu_sc0002900.1_g000003 Rmu_sc0003410.1_g000003 Rmu_sc0009365.1_g000011 Rmu_sc0011124.1_g000001 Rmu_sc0011806.1_g000003 Rmu_sc0014304.1_g000001 Rmu_sc0026800.1_g000001 Rmu_ssc0000026.1_g000005
rosa_roxburghii	Rroxscaffold_1G00047290 Rroxscaffold_5G00349170 Rroxscaffold_7G00169450
rosa_rugosa	Rorug02G0307300
rosa_samantha	Rh1CG170200 Rh2BG294200 Rh2BG331900 Rh2CG478300 Rh2CG514100 Rh3DG332200 Rh4BG389200 Rh4CG173800 Rh5CG378500 Rh7AG370300 Rh7AG371300 Rh7BG367300 Rh7CG389100 Rh7CG389900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	257, 465, 500
AclWI	GGATC	1 cut(s)	320
AcoI	YGGCCR	1 cut(s)	600
AcsI	RAATTY	1 cut(s)	432
AcyI	GRCGYC	1 cut(s)	290
AdeI	CACNNNGTG	1 cut(s)	265
AfiI	CCNNNNNNNGG	1 cut(s)	635
AgsI	TTSAA	2 cut(s)	133, 161
AjnI	CCWGG	2 cut(s)	85, 597
AjuI	GAANNNNNNNTTGG	2 cut(s)	618, 650
AluBI	AGCT	2 cut(s)	146, 614
AluI	AGCT	2 cut(s)	146, 614
Alw26I	GTCTC	2 cut(s)	101, 332
AlwI	GGATC	1 cut(s)	320
AlwNI	CAGNNNCTG	1 cut(s)	598
AoxI	GGCC	2 cut(s)	536, 600
ApeKI	GCWGC	1 cut(s)	587
ApoI	RAATTY	1 cut(s)	432
AspA2I	CCTAGG	1 cut(s)	533
AspLEI	GCGC	1 cut(s)	560
AspS9I	GGNCC	2 cut(s)	37, 537
AsuHPI	GGTGA	1 cut(s)	233
AsuII	TTCGAA	1 cut(s)	624
AvaII	GGWCC	1 cut(s)	37
AvrII	CCTAGG	1 cut(s)	533
BaeGI	GKGCMC	1 cut(s)	32
BalI	TGGCCA	1 cut(s)	602
BbsI	GAAGAC	1 cut(s)	64
BbvI	GCAGC	1 cut(s)	599
BciT130I	CCWGG	2 cut(s)	87, 599
BcoDI	GTCTC	2 cut(s)	101, 332
BfaI	CTAG	2 cut(s)	534, 652
BisI	GCNGC	3 cut(s)	465, 501, 588
BlnI	CCTAGG	1 cut(s)	533
BlsI	GCNGC	3 cut(s)	466, 502, 589
Bme1390I	CCNGG	2 cut(s)	87, 599
Bme18I	GGWCC	1 cut(s)	37
BmgT120I	GGNCC	2 cut(s)	37, 537
BmiI	GGNNCC	3 cut(s)	39, 463, 520
BmrFI	CCNGG	2 cut(s)	87, 599
BmsI	GCATC	4 cut(s)	162, 198, 259, 340
BpiI	GAAGAC	1 cut(s)	64
BpmI	CTGGAG	2 cut(s)	108, 477
Bpu14I	TTCGAA	1 cut(s)	624
BsaBI	GATNNNNATC	1 cut(s)	237
BsaHI	GRCGYC	1 cut(s)	290
BsaJI	CCNNGG	3 cut(s)	66, 393, 533
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
Bsc4I	CCNNNNNNNGG	1 cut(s)	635
Bse118I	RCCGGY	1 cut(s)	286
Bse3DI	GCAATG	1 cut(s)	582
Bse8I	GATNNNNATC	1 cut(s)	237
BseBI	CCWGG	2 cut(s)	87, 599
BseDI	CCNNGG	3 cut(s)	66, 393, 533
BseGI	GGATG	4 cut(s)	62, 274, 331, 469
BseJI	GATNNNNATC	1 cut(s)	237
BseLI	CCNNNNNNNGG	1 cut(s)	635
BseMI	GCAATG	1 cut(s)	582
BseMII	CTCAG	2 cut(s)	385, 438
BseRI	GAGGAG	2 cut(s)	433, 474
BseSI	GKGCMC	1 cut(s)	32
BseXI	GCAGC	1 cut(s)	599
BshFI	GGCC	2 cut(s)	538, 602
BsiSI	CCGG	2 cut(s)	287, 310
BslI	CCNNNNNNNGG	1 cut(s)	635
BsmAI	GTCTC	2 cut(s)	101, 332
BsmBI	CGTCTC	1 cut(s)	101
BsnI	GGCC	2 cut(s)	538, 602
Bsp119I	TTCGAA	1 cut(s)	624
Bsp1286I	GDGCHC	1 cut(s)	32
Bsp143I	GATC	2 cut(s)	312, 483
BspACI	CCGC	3 cut(s)	257, 465, 500
BspANI	GGCC	2 cut(s)	538, 602
BspCNI	CTCAG	2 cut(s)	384, 439
BspLI	GGNNCC	3 cut(s)	39, 463, 520
BspPI	GGATC	1 cut(s)	320
BspT104I	TTCGAA	1 cut(s)	624
BsrDI	GCAATG	1 cut(s)	582
BsrFI	RCCGGY	1 cut(s)	286
BssAI	RCCGGY	1 cut(s)	286
BssECI	CCNNGG	3 cut(s)	66, 393, 533
BssMI	GATC	2 cut(s)	312, 483
BssNI	GRCGYC	1 cut(s)	290
BssT1I	CCWWGG	3 cut(s)	66, 393, 533
Bst2UI	CCWGG	2 cut(s)	87, 599
Bst4CI	ACNGT	2 cut(s)	579, 594
BstACI	GRCGYC	1 cut(s)	290
BstBI	TTCGAA	1 cut(s)	624
BstC8I	GCNNGC	1 cut(s)	288
BstDEI	CTNAG	5 cut(s)	33, 152, 371, 447, 630
BstF5I	GGATG	4 cut(s)	62, 274, 331, 469
BstHHI	GCGC	1 cut(s)	560
BstKTI	GATC	2 cut(s)	315, 486
BstMAI	GTCTC	2 cut(s)	101, 332
BstMBI	GATC	2 cut(s)	312, 483
BstMWI	GCNNNNNNNGC	2 cut(s)	497, 535
BstNI	CCWGG	2 cut(s)	87, 599
BstNSI	RCATGY	1 cut(s)	564
BstSCI	CCNGG	2 cut(s)	85, 597
BstSLI	GKGCMC	1 cut(s)	32
BstV1I	GCAGC	1 cut(s)	599
BstV2I	GAAGAC	1 cut(s)	64
BsuRI	GGCC	2 cut(s)	538, 602
BtsCI	GGATG	4 cut(s)	62, 274, 331, 469
BtsIMutI	CAGTG	2 cut(s)	315, 599
Cac8I	GCNNGC	1 cut(s)	288
CaiI	CAGNNNCTG	1 cut(s)	598
CfoI	GCGC	1 cut(s)	560
Cfr10I	RCCGGY	1 cut(s)	286
Cfr13I	GGNCC	2 cut(s)	37, 537
CseI	GACGC	1 cut(s)	279
CviAII	CATG	4 cut(s)	164, 353, 385, 561
CviJI	RGCY	7 cut(s)	146, 464, 503, 529, 538, 602, 614
CviKI_1	RGCY	7 cut(s)	146, 464, 503, 529, 538, 602, 614
DdeI	CTNAG	5 cut(s)	33, 152, 371, 447, 630
DpnI	GATC	2 cut(s)	314, 485
DpnII	GATC	2 cut(s)	312, 483
DraIII	CACNNNGTG	1 cut(s)	265
EaeI	YGGCCR	1 cut(s)	600
Eco130I	CCWWGG	3 cut(s)	66, 393, 533
Eco47I	GGWCC	1 cut(s)	37
EcoO109I	RGGNCCY	1 cut(s)	37
EcoRII	CCWGG	2 cut(s)	85, 597
EcoT14I	CCWWGG	3 cut(s)	66, 393, 533
ErhI	CCWWGG	3 cut(s)	66, 393, 533
Esp3I	CGTCTC	1 cut(s)	101
FaeI	CATG	4 cut(s)	167, 356, 388, 564
FaiI	YATR	7 cut(s)	8, 165, 217, 354, 386, 478, 562
FalI	AAGNNNNNCTT	2 cut(s)	489, 521
FatI	CATG	4 cut(s)	163, 352, 384, 560
FauI	CCCGC	1 cut(s)	264
Fnu4HI	GCNGC	3 cut(s)	465, 501, 588
FokI	GGATG	4 cut(s)	49, 281, 318, 456
Fsp4HI	GCNGC	3 cut(s)	465, 501, 588
FspBI	CTAG	2 cut(s)	534, 652
GlaI	GCGC	1 cut(s)	559
GluI	GCNGC	3 cut(s)	465, 501, 588
GsuI	CTGGAG	2 cut(s)	108, 477
HaeIII	GGCC	2 cut(s)	538, 602
HapII	CCGG	2 cut(s)	287, 310
HgaI	GACGC	1 cut(s)	279
HhaI	GCGC	1 cut(s)	560
Hin1I	GRCGYC	1 cut(s)	290
Hin1II	CATG	4 cut(s)	167, 356, 388, 564
Hin6I	GCGC	1 cut(s)	558
HinP1I	GCGC	1 cut(s)	558
HincII	GTYRAC	1 cut(s)	421
HindII	GTYRAC	1 cut(s)	421
HinfI	GANTC	2 cut(s)	90, 621
HpaII	CCGG	2 cut(s)	287, 310
HphI	GGTGA	1 cut(s)	233
Hpy166II	GTNNAC	1 cut(s)	421
Hpy188I	TCNGA	2 cut(s)	207, 448
Hpy188III	TCNNGA	6 cut(s)	16, 122, 335, 456, 506, 618
Hpy8I	GTNNAC	1 cut(s)	421
HpyAV	CCTTC	2 cut(s)	506, 562
HpyCH4III	ACNGT	2 cut(s)	579, 594
HpyCH4IV	ACGT	1 cut(s)	349
HpyCH4V	TGCA	4 cut(s)	175, 272, 582, 587
HpyF10VI	GCNNNNNNNGC	2 cut(s)	497, 535
HpyF3I	CTNAG	5 cut(s)	33, 152, 371, 447, 630
HpySE526I	ACGT	1 cut(s)	349
Hsp92I	GRCGYC	1 cut(s)	290
Hsp92II	CATG	4 cut(s)	167, 356, 388, 564
HspAI	GCGC	1 cut(s)	558
KroI	GCCGGC	1 cut(s)	286
KroNI	GCCGGC	1 cut(s)	288
Kzo9I	GATC	2 cut(s)	312, 483
LmnI	GCTCC	3 cut(s)	251, 461, 576
Lsp1109I	GCAGC	1 cut(s)	599
LweI	GCATC	4 cut(s)	162, 198, 259, 340
MaeI	CTAG	2 cut(s)	534, 652
MaeII	ACGT	1 cut(s)	349
MaeIII	GTNAC	2 cut(s)	48, 355
MalI	GATC	2 cut(s)	314, 485
MboI	GATC	2 cut(s)	312, 483
MboII	GAAGA	2 cut(s)	64, 233
MhlI	GDGCHC	1 cut(s)	32
MlsI	TGGCCA	1 cut(s)	602
MluCI	AATT	1 cut(s)	432
MluNI	TGGCCA	1 cut(s)	602
MlyI	GAGTC	1 cut(s)	99
MmeI	TCCRAC	2 cut(s)	84, 598
MnlI	CCTC	6 cut(s)	51, 188, 217, 451, 452, 454
Mox20I	TGGCCA	1 cut(s)	602
MroNI	GCCGGC	1 cut(s)	286
MscI	TGGCCA	1 cut(s)	602
Msp20I	TGGCCA	1 cut(s)	602
MspI	CCGG	2 cut(s)	287, 310
MspR9I	CCNGG	2 cut(s)	87, 599
MvaI	CCWGG	2 cut(s)	87, 599
MwoI	GCNNNNNNNGC	2 cut(s)	497, 535
NaeI	GCCGGC	1 cut(s)	288
NdeII	GATC	2 cut(s)	312, 483
NgoMIV	GCCGGC	1 cut(s)	286
NlaIII	CATG	4 cut(s)	167, 356, 388, 564
NlaIV	GGNNCC	3 cut(s)	39, 463, 520
NmuCI	GTSAC	1 cut(s)	355
NspI	RCATGY	1 cut(s)	564
NspV	TTCGAA	1 cut(s)	624
PdiI	GCCGGC	1 cut(s)	288
PfeI	GAWTC	1 cut(s)	621
PfoI	TCCNGGA	1 cut(s)	85
PkrI	GCNGC	3 cut(s)	466, 502, 589
PleI	GAGTC	1 cut(s)	98
PpsI	GAGTC	1 cut(s)	98
PpuMI	RGGWCCY	1 cut(s)	37
Psp5II	RGGWCCY	1 cut(s)	37
Psp6I	CCWGG	2 cut(s)	85, 597
PspGI	CCWGG	2 cut(s)	85, 597
PspN4I	GGNNCC	3 cut(s)	39, 463, 520
PspPI	GGNCC	2 cut(s)	37, 537
PspPPI	RGGWCCY	1 cut(s)	37
PstNI	CAGNNNCTG	1 cut(s)	598
SatI	GCNGC	3 cut(s)	465, 501, 588
Sau3AI	GATC	2 cut(s)	312, 483
Sau96I	GGNCC	2 cut(s)	37, 537
SchI	GAGTC	1 cut(s)	99
ScrFI	CCNGG	2 cut(s)	87, 599
SduI	GDGCHC	1 cut(s)	32
SetI	ASST	7 cut(s)	83, 148, 158, 352, 426, 616, 631
SfaNI	GCATC	4 cut(s)	162, 198, 259, 340
SfuI	TTCGAA	1 cut(s)	624
SinI	GGWCC	1 cut(s)	37
Sse9I	AATT	1 cut(s)	432
SsiI	CCGC	3 cut(s)	257, 465, 500
SspMI	CTAG	2 cut(s)	534, 652
StyD4I	CCNGG	2 cut(s)	85, 597
StyI	CCWWGG	3 cut(s)	66, 393, 533
TaaI	ACNGT	2 cut(s)	579, 594
TaiI	ACGT	1 cut(s)	352
TaqI	TCGA	2 cut(s)	142, 624
TasI	AATT	1 cut(s)	432
TauI	GCSGC	2 cut(s)	467, 503
TfiI	GAWTC	1 cut(s)	621
TscAI	CASTG	2 cut(s)	322, 599
TseFI	GTSAC	1 cut(s)	355
TseI	GCWGC	1 cut(s)	587
Tsp45I	GTSAC	1 cut(s)	355
TspDTI	ATGAA	1 cut(s)	227
TspRI	CASTG	2 cut(s)	322, 599
VpaK11BI	GGWCC	1 cut(s)	37
XapI	RAATTY	1 cut(s)	432
XceI	RCATGY	1 cut(s)	564
XcmI	CCANNNNNNNNNTGG	1 cut(s)	83
XmaJI	CCTAGG	1 cut(s)	533
XspI	CTAG	2 cut(s)	534, 652

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.