Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0005205

Physical Location & Seq

Genomic Coordinates Reverse (-)

39275971 .. 39276381

Gene Structure 411 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG367300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGATATAGTTTTCTGGAATATCAGGGGCACTAAGGACCCTCGTAAGTTACGGGCGTTGTCATCCTTGGTCTTCCAAAGGCGTCCTGGAGTCCTATTTTTGTTGGAGACGAAGTGTAGTCAAGAACGCTTCAATTCCTTTCGAGCTAATCTAAGGTTTCAACATGGAGTGATGCAGGAGTGTAGCGATAATGGAGGGGATGGTCTGATGCTGTTATGGGGTGAGGACATTGATATTCATCTTTGCTCCTATTCCCAGCACTTTGTGGATGCAGATGTGGTGTTGCCGGCGTCTAAAGGGGGTCTTTGCCGGATCACTGGTTTTTACGGGCATCCAGAAATAGCGCAACATCATGTCACTTGGGATTTACTCAGGCAACTTGCCATGCTTCCCGAGGCAGATAAGTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-RVT

Protein Analysis

136

Amino Acids

15.53

Weight (kDa)

6.57

Isoelectric Point (pI)

37.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005205)

Species	Orthologous Gene IDs
malus_domestica	MD07G1185800.v1.1
rosa_chinensis	RchiOBHm_Chr1g0327941
rosa_laevigata	RLG00000018282
rosa_multiflora	Rmu_co8368975.1_g000001 Rmu_sc0002900.1_g000003 Rmu_sc0003410.1_g000003 Rmu_sc0009365.1_g000011 Rmu_sc0011124.1_g000001 Rmu_sc0011806.1_g000003 Rmu_sc0014304.1_g000001 Rmu_sc0026800.1_g000001 Rmu_ssc0000026.1_g000005
rosa_roxburghii	Rroxscaffold_1G00047290 Rroxscaffold_5G00349170 Rroxscaffold_7G00169450
rosa_rugosa	Rorug02G0307300
rosa_samantha	Rh1CG170200 Rh2BG294200 Rh2BG331900 Rh2CG478300 Rh2CG514100 Rh3DG332200 Rh4BG389200 Rh4CG173800 Rh5CG378500 Rh7AG370300 Rh7AG371300 Rh7BG367300 Rh7CG389100 Rh7CG389900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	320
AcyI	GRCGYC	2 cut(s)	82, 290
AdeI	CACNNNGTG	1 cut(s)	265
AgsI	TTSAA	2 cut(s)	133, 161
AjnI	CCWGG	1 cut(s)	85
AluBI	AGCT	1 cut(s)	146
AluI	AGCT	1 cut(s)	146
Alw26I	GTCTC	1 cut(s)	101
AlwI	GGATC	1 cut(s)	320
Ama87I	CYCGRG	1 cut(s)	392
AspLEI	GCGC	1 cut(s)	346
AspS9I	GGNCC	1 cut(s)	37
AsuHPI	GGTGA	1 cut(s)	233
AvaI	CYCGRG	1 cut(s)	392
AvaII	GGWCC	1 cut(s)	37
BaeGI	GKGCMC	1 cut(s)	32
BbsI	GAAGAC	1 cut(s)	64
BccI	CCATC	1 cut(s)	194
BciT130I	CCWGG	1 cut(s)	87
BcoDI	GTCTC	1 cut(s)	101
Bme1390I	CCNGG	1 cut(s)	87
Bme18I	GGWCC	1 cut(s)	37
BmeT110I	CYCGRG	1 cut(s)	392
BmgT120I	GGNCC	1 cut(s)	37
BmiI	GGNNCC	1 cut(s)	39
BmrFI	CCNGG	1 cut(s)	87
BmsI	GCATC	4 cut(s)	162, 198, 259, 340
BpiI	GAAGAC	1 cut(s)	64
BpmI	CTGGAG	1 cut(s)	108
BsaBI	GATNNNNATC	1 cut(s)	237
BsaHI	GRCGYC	2 cut(s)	82, 290
BsaJI	CCNNGG	2 cut(s)	66, 393
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
Bse118I	RCCGGY	1 cut(s)	286
Bse1I	ACTGG	1 cut(s)	322
Bse8I	GATNNNNATC	1 cut(s)	237
BseBI	CCWGG	1 cut(s)	87
BseDI	CCNNGG	2 cut(s)	66, 393
BseGI	GGATG	4 cut(s)	62, 205, 274, 331
BseJI	GATNNNNATC	1 cut(s)	237
BseMII	CTCAG	1 cut(s)	385
BseNI	ACTGG	1 cut(s)	322
BseSI	GKGCMC	1 cut(s)	32
BseYI	CCCAGC	1 cut(s)	255
BsiHKCI	CYCGRG	1 cut(s)	392
BsiSI	CCGG	2 cut(s)	287, 310
BsmAI	GTCTC	1 cut(s)	101
BsmBI	CGTCTC	1 cut(s)	101
BsoBI	CYCGRG	1 cut(s)	392
Bsp1286I	GDGCHC	1 cut(s)	32
Bsp143I	GATC	1 cut(s)	312
BspCNI	CTCAG	1 cut(s)	384
BspLI	GGNNCC	1 cut(s)	39
BspPI	GGATC	1 cut(s)	320
BsrFI	RCCGGY	1 cut(s)	286
BsrI	ACTGG	1 cut(s)	322
BssAI	RCCGGY	1 cut(s)	286
BssECI	CCNNGG	2 cut(s)	66, 393
BssMI	GATC	1 cut(s)	312
BssNI	GRCGYC	2 cut(s)	82, 290
BssT1I	CCWWGG	1 cut(s)	66
Bst2UI	CCWGG	1 cut(s)	87
BstACI	GRCGYC	2 cut(s)	82, 290
BstC8I	GCNNGC	1 cut(s)	288
BstDEI	CTNAG	3 cut(s)	33, 152, 371
BstF5I	GGATG	4 cut(s)	62, 205, 274, 331
BstHHI	GCGC	1 cut(s)	346
BstKTI	GATC	1 cut(s)	315
BstMAI	GTCTC	1 cut(s)	101
BstMBI	GATC	1 cut(s)	312
BstNI	CCWGG	1 cut(s)	87
BstSCI	CCNGG	1 cut(s)	85
BstSLI	GKGCMC	1 cut(s)	32
BstV2I	GAAGAC	1 cut(s)	64
BtsCI	GGATG	4 cut(s)	62, 205, 274, 331
BtsIMutI	CAGTG	1 cut(s)	315
Cac8I	GCNNGC	1 cut(s)	288
CfoI	GCGC	1 cut(s)	346
Cfr10I	RCCGGY	1 cut(s)	286
Cfr13I	GGNCC	1 cut(s)	37
CseI	GACGC	2 cut(s)	71, 279
CviAII	CATG	3 cut(s)	164, 353, 385
CviJI	RGCY	1 cut(s)	146
CviKI_1	RGCY	1 cut(s)	146
DdeI	CTNAG	3 cut(s)	33, 152, 371
DpnI	GATC	1 cut(s)	314
DpnII	GATC	1 cut(s)	312
DraIII	CACNNNGTG	1 cut(s)	265
Eco130I	CCWWGG	1 cut(s)	66
Eco47I	GGWCC	1 cut(s)	37
Eco88I	CYCGRG	1 cut(s)	392
EcoO109I	RGGNCCY	1 cut(s)	37
EcoRII	CCWGG	1 cut(s)	85
EcoT14I	CCWWGG	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	66
Esp3I	CGTCTC	1 cut(s)	101
FaeI	CATG	3 cut(s)	167, 356, 388
FaiI	YATR	5 cut(s)	8, 165, 217, 354, 386
FalI	AAGNNNNNCTT	2 cut(s)	288, 320
FatI	CATG	3 cut(s)	163, 352, 384
FokI	GGATG	4 cut(s)	49, 212, 281, 318
GlaI	GCGC	1 cut(s)	345
GsaI	CCCAGC	1 cut(s)	259
GsuI	CTGGAG	1 cut(s)	108
HapII	CCGG	2 cut(s)	287, 310
HgaI	GACGC	2 cut(s)	71, 279
HhaI	GCGC	1 cut(s)	346
Hin1I	GRCGYC	2 cut(s)	82, 290
Hin1II	CATG	3 cut(s)	167, 356, 388
Hin6I	GCGC	1 cut(s)	344
HinP1I	GCGC	1 cut(s)	344
HinfI	GANTC	1 cut(s)	90
HpaII	CCGG	2 cut(s)	287, 310
HphI	GGTGA	1 cut(s)	233
Hpy188I	TCNGA	1 cut(s)	207
Hpy188III	TCNNGA	4 cut(s)	16, 122, 335, 392
HpyCH4V	TGCA	2 cut(s)	175, 272
HpyF3I	CTNAG	3 cut(s)	33, 152, 371
Hsp92I	GRCGYC	2 cut(s)	82, 290
Hsp92II	CATG	3 cut(s)	167, 356, 388
HspAI	GCGC	1 cut(s)	344
KroI	GCCGGC	1 cut(s)	286
KroNI	GCCGGC	1 cut(s)	288
Kzo9I	GATC	1 cut(s)	312
LmnI	GCTCC	1 cut(s)	251
LweI	GCATC	4 cut(s)	162, 198, 259, 340
MaeIII	GTNAC	2 cut(s)	48, 355
MalI	GATC	1 cut(s)	314
MboI	GATC	1 cut(s)	312
MboII	GAAGA	1 cut(s)	64
MhlI	GDGCHC	1 cut(s)	32
MluCI	AATT	1 cut(s)	133
MlyI	GAGTC	1 cut(s)	99
MmeI	TCCRAC	1 cut(s)	84
MnlI	CCTC	4 cut(s)	51, 188, 217, 388
MroNI	GCCGGC	1 cut(s)	286
MspI	CCGG	2 cut(s)	287, 310
MspR9I	CCNGG	1 cut(s)	87
MvaI	CCWGG	1 cut(s)	87
NaeI	GCCGGC	1 cut(s)	288
NdeII	GATC	1 cut(s)	312
NgoMIV	GCCGGC	1 cut(s)	286
NlaIII	CATG	3 cut(s)	167, 356, 388
NlaIV	GGNNCC	1 cut(s)	39
NmuCI	GTSAC	1 cut(s)	355
PdiI	GCCGGC	1 cut(s)	288
PfoI	TCCNGGA	1 cut(s)	85
PleI	GAGTC	1 cut(s)	98
PpsI	GAGTC	1 cut(s)	98
PpuMI	RGGWCCY	1 cut(s)	37
Psp5II	RGGWCCY	1 cut(s)	37
Psp6I	CCWGG	1 cut(s)	85
PspFI	CCCAGC	1 cut(s)	255
PspGI	CCWGG	1 cut(s)	85
PspN4I	GGNNCC	1 cut(s)	39
PspPI	GGNCC	1 cut(s)	37
PspPPI	RGGWCCY	1 cut(s)	37
Sau3AI	GATC	1 cut(s)	312
Sau96I	GGNCC	1 cut(s)	37
SchI	GAGTC	1 cut(s)	99
ScrFI	CCNGG	1 cut(s)	87
SduI	GDGCHC	1 cut(s)	32
SetI	ASST	2 cut(s)	148, 158
SfaNI	GCATC	4 cut(s)	162, 198, 259, 340
SinI	GGWCC	1 cut(s)	37
Sse9I	AATT	1 cut(s)	133
StyD4I	CCNGG	1 cut(s)	85
StyI	CCWWGG	1 cut(s)	66
TaqI	TCGA	1 cut(s)	142
TasI	AATT	1 cut(s)	133
TscAI	CASTG	1 cut(s)	322
TseFI	GTSAC	1 cut(s)	355
Tsp45I	GTSAC	1 cut(s)	355
TspDTI	ATGAA	1 cut(s)	227
TspRI	CASTG	1 cut(s)	322
VpaK11BI	GGWCC	1 cut(s)	37
XcmI	CCANNNNNNNNNTGG	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.