Rh2BG294200

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0005205
Physical Location & Seq
Reverse (-)
33318208 .. 33345602
27395 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG294200.1

Sequence Viewer

Length: 1074 bp
ATGGTGAACATGAATGTTAGAGGAGTTTATCCAGCGCCAGAAGATTATCTTGCACCTACACCATTTGAACAAGTCAGTACAGCATCAACCAATCTGCCAGCTACTGCAACATCAATCAATCTGCCTTCGGAAAGAAAGAGAGGTACTCAAGCAAGTGCAAGAAGACTGTTGAAAAGGATAAAGAGGGAAGCCGAAGATGAAGGAACTGCGTCACCAACCGTGGCTAAAGAACACCAGCAGCAGCAGAAGCATTTTCATCAAGGTTCCATTCTGGTACTATGGTCTCCACTCTTGACTCAACGAACAAAGAGCAAGTTTGTTGTGGTCCCTGAGACCCTGCTCAACCATGTTGGTTTGTTGGACAAAGGGCTCGAGTATTTCAATCTAATGAGAAATGATGATTTGCCTGAGCCACCCAAGGTGGAGCATTATGCTACCGTTGTTGATCTTTTTGGTCGGGCTGGAAACCTTCACGAAGTGGAAGCCTTCGTCAATAGCATGCCAATAGAGCCAGGTGCCTCAGTATACAAAGCTCTACTTAGTTCGTGCCAAGTTCATGGAAACAGAGAACTTGCTCTTTGTTCTGCAACAAAGCTTCAGCAACTGTGCCCAAATGATCCTGCAACTTACGTACTGCTATCAAATGTGTTGTTGACAAGAGGCTCCTGGGATGTTGCAGCAGGAGTACGGAAGCTCATGTATGATAGAGGAATAAGCAAGCTAGAACATGCATTTTTTGTTGATGGGTTCTTCTGTCCACTCTATAAGCAGCTTGGCCTTGAGATCTTTGACGTGGTTGAGCTCTCTGCACTGCAGGTTTGCCCACCTGAAACAGTGGGCAAAACAGTTTCTTCTACTAGAAACAATGGAACCAGAGGAACAAACCCAATCATCAGGATTGGTAGTGACGGCGTCCATGTGGCACCCCACAAAGGACAACACTTTCCCGGGCATAGTCCCTGGGTACTCCACAATCACGTTGCCCCTGCCGGGGTGGTAAGTCACGTGGTTGATGAGGAAAGGTCCGCCGCCGGTGGTGGTGCTAAGGGGCAAGAGAGGCGAGCAAGTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 Pkinase_Tyr

Protein Analysis

357

Amino Acids

39.03

Weight (kDa)

8.23

Isoelectric Point (pI)

42.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
E_motif PF20431 186 - 240 3.7e-07 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 805
AccB1I GGYRCC 2 cut(s) 515, 922
AccI GTMKAC 1 cut(s) 525
AciI CCGC 2 cut(s) 1026, 1029
AclWI GGATC 1 cut(s) 611
AcuI CTGAAG 1 cut(s) 581
AcvI CACGTG 1 cut(s) 1006
AcyI GRCGYC 1 cut(s) 912
AdeI CACNNNGTG 1 cut(s) 478
AfaI GTAC 6 cut(s) 79, 145, 276, 633, 687, 966
AfiI CCNNNNNNNGG 3 cut(s) 932, 990, 991
AgsI TTSAA 3 cut(s) 68, 172, 382
AjiI CACGTC 1 cut(s) 793
AjnI CCWGG 3 cut(s) 511, 665, 959
AluBI AGCT 7 cut(s) 101, 533, 595, 694, 721, 772, 802
AluI AGCT 7 cut(s) 101, 533, 595, 694, 721, 772, 802
Alw21I GWGCWC 1 cut(s) 804
Alw26I GTCTC 2 cut(s) 288, 326
AlwI GGATC 1 cut(s) 611
AlwNI CAGNNNCTG 2 cut(s) 104, 604
Ama87I CYCGRG 2 cut(s) 371, 947
AoxI GGCC 1 cut(s) 775
ApeKI GCWGC 4 cut(s) 238, 241, 677, 769
AspLEI GCGC 1 cut(s) 37
AspS9I GGNCC 2 cut(s) 325, 1023
AsuC2I CCSGG 3 cut(s) 948, 949, 991
AsuHPI GGTGA 2 cut(s) 16, 204
AvaI CYCGRG 2 cut(s) 371, 947
AvaII GGWCC 2 cut(s) 325, 1023
BaeGI GKGCMC 1 cut(s) 611
BaeI ACNNNNGTAYC 2 cut(s) 266, 299
BanI GGYRCC 2 cut(s) 515, 922
BanII GRGCYC 2 cut(s) 372, 804
BbrPI CACGTG 1 cut(s) 1006
BbsI GAAGAC 1 cut(s) 169
Bbv12I GWGCWC 1 cut(s) 804
BbvI GCAGC 4 cut(s) 250, 253, 689, 781
BccI CCATC 1 cut(s) 737
BceAI ACGGC 1 cut(s) 925
BciT130I CCWGG 3 cut(s) 513, 667, 961
BcnI CCSGG 3 cut(s) 948, 949, 991
BcoDI GTCTC 2 cut(s) 288, 326
BfaI CTAG 2 cut(s) 722, 858
BfmI CTRYAG 1 cut(s) 812
BfoI RGCGCY 1 cut(s) 38
BfuAI ACCTGC 1 cut(s) 805
BglII AGATCT 1 cut(s) 783
BisI GCNGC 5 cut(s) 239, 242, 678, 770, 1029
BlsI GCNGC 5 cut(s) 240, 243, 679, 771, 1030
Bme1390I CCNGG 6 cut(s) 513, 667, 948, 949, 961, 991
Bme18I GGWCC 2 cut(s) 325, 1023
BmeT110I CYCGRG 2 cut(s) 371, 947
BmgBI CACGTC 1 cut(s) 793
BmgT120I GGNCC 2 cut(s) 325, 1023
BmiI GGNNCC 6 cut(s) 265, 327, 517, 664, 871, 924
BmrFI CCNGG 6 cut(s) 513, 667, 948, 949, 961, 991
BmsI GCATC 1 cut(s) 92
BpiI GAAGAC 1 cut(s) 169
BplI GAGNNNNNCTC 2 cut(s) 130, 162
Bpu10I CCTNAGC 2 cut(s) 408, 1044
BpuEI CTTGAG 2 cut(s) 132, 800
BpuMI CCSGG 3 cut(s) 948, 949, 991
BsaAI YACGTR 2 cut(s) 631, 1006
BsaHI GRCGYC 1 cut(s) 912
BsaI GGTCTC 2 cut(s) 288, 326
BsaJI CCNNGG 7 cut(s) 219, 417, 666, 947, 959, 960, 990
Bsc4I CCNNNNNNNGG 3 cut(s) 932, 990, 991
Bse118I RCCGGY 1 cut(s) 1031
BseBI CCWGG 3 cut(s) 513, 667, 961
BseDI CCNNGG 7 cut(s) 219, 417, 666, 947, 959, 960, 990
BseGI GGATG 1 cut(s) 676
BseLI CCNNNNNNNGG 3 cut(s) 932, 990, 991
BseMII CTCAG 3 cut(s) 321, 399, 534
BseRI GAGGAG 1 cut(s) 36
BseSI GKGCMC 1 cut(s) 611
BseXI GCAGC 4 cut(s) 250, 253, 689, 781
BsgI GTGCAG 1 cut(s) 792
BshFI GGCC 1 cut(s) 777
BshNI GGYRCC 2 cut(s) 515, 922
BsiHKAI GWGCWC 1 cut(s) 804
BsiHKCI CYCGRG 2 cut(s) 371, 947
BsiSI CCGG 3 cut(s) 948, 990, 1032
BslFI GGGAC 2 cut(s) 311, 942
BslI CCNNNNNNNGG 3 cut(s) 932, 990, 991
BsmAI GTCTC 2 cut(s) 288, 326
BsmFI GGGAC 2 cut(s) 311, 942
BsnI GGCC 1 cut(s) 777
Bso31I GGTCTC 2 cut(s) 288, 326
BsoBI CYCGRG 2 cut(s) 371, 947
Bsp1286I GDGCHC 3 cut(s) 372, 611, 804
Bsp143I GATC 3 cut(s) 445, 616, 783
BspACI CCGC 2 cut(s) 1026, 1029
BspANI GGCC 1 cut(s) 777
BspCNI CTCAG 3 cut(s) 322, 400, 533
BspLI GGNNCC 6 cut(s) 265, 327, 517, 664, 871, 924
BspMAI CTGCAG 1 cut(s) 816
BspMI ACCTGC 1 cut(s) 805
BspPI GGATC 1 cut(s) 611
BspT107I GGYRCC 2 cut(s) 515, 922
BspTNI GGTCTC 2 cut(s) 288, 326
BsrFI RCCGGY 1 cut(s) 1031
BssAI RCCGGY 1 cut(s) 1031
BssECI CCNNGG 7 cut(s) 219, 417, 666, 947, 959, 960, 990
BssMI GATC 3 cut(s) 445, 616, 783
BssNAI GTATAC 1 cut(s) 526
BssNI GRCGYC 1 cut(s) 912
BssT1I CCWWGG 1 cut(s) 417
Bst1107I GTATAC 1 cut(s) 526
Bst2UI CCWGG 3 cut(s) 513, 667, 961
Bst4CI ACNGT 6 cut(s) 168, 220, 439, 606, 835, 847
BstACI GRCGYC 1 cut(s) 912
BstBAI YACGTR 2 cut(s) 631, 1006
BstC8I GCNNGC 4 cut(s) 99, 500, 719, 1062
BstDEI CTNAG 5 cut(s) 330, 408, 520, 539, 1044
BstDSI CCRYGG 1 cut(s) 219
BstF5I GGATG 1 cut(s) 676
BstH2I RGCGCY 1 cut(s) 38
BstHHI GCGC 1 cut(s) 37
BstKTI GATC 3 cut(s) 448, 619, 786
BstMAI GTCTC 2 cut(s) 288, 326
BstMBI GATC 3 cut(s) 445, 616, 783
BstMWI GCNNNNNNNGC 3 cut(s) 247, 508, 1057
BstNI CCWGG 3 cut(s) 513, 667, 961
BstNSI RCATGY 2 cut(s) 502, 731
BstSCI CCNGG 6 cut(s) 511, 665, 946, 947, 959, 989
BstSFI CTRYAG 1 cut(s) 812
BstSLI GKGCMC 1 cut(s) 611
BstSNI TACGTA 1 cut(s) 631
BstV1I GCAGC 4 cut(s) 250, 253, 689, 781
BstV2I GAAGAC 1 cut(s) 169
BstX2I RGATCY 1 cut(s) 783
BstXI CCANNNNNNTGG 1 cut(s) 557
BstYI RGATCY 1 cut(s) 783
BstZ17I GTATAC 1 cut(s) 526
BsuRI GGCC 1 cut(s) 777
BtgI CCRYGG 1 cut(s) 219
BtrI CACGTC 1 cut(s) 793
BtsCI GGATG 1 cut(s) 676
BtsI GCAGTG 1 cut(s) 809
BtsIMutI CAGTG 2 cut(s) 809, 840
BveI ACCTGC 1 cut(s) 805
Cac8I GCNNGC 4 cut(s) 99, 500, 719, 1062
CaiI CAGNNNCTG 2 cut(s) 104, 604
CfoI GCGC 1 cut(s) 37
Cfr10I RCCGGY 1 cut(s) 1031
Cfr13I GGNCC 2 cut(s) 325, 1023
Cfr9I CCCGGG 1 cut(s) 947
CseI GACGC 2 cut(s) 198, 901
Csp6I GTAC 6 cut(s) 78, 144, 275, 632, 686, 965
CviAII CATG 7 cut(s) 10, 347, 499, 557, 697, 728, 917
CviQI GTAC 6 cut(s) 78, 144, 275, 632, 686, 965
DdeI CTNAG 5 cut(s) 330, 408, 520, 539, 1044
DpnI GATC 3 cut(s) 447, 618, 785
DpnII GATC 3 cut(s) 445, 616, 783
DraIII CACNNNGTG 1 cut(s) 478
EciI GGCGGA 1 cut(s) 1015
Ecl136II GAGCTC 1 cut(s) 802
Eco105I TACGTA 1 cut(s) 631
Eco130I CCWWGG 1 cut(s) 417
Eco24I GRGCYC 2 cut(s) 372, 804
Eco31I GGTCTC 2 cut(s) 288, 326
Eco47I GGWCC 2 cut(s) 325, 1023
Eco53kI GAGCTC 1 cut(s) 802
Eco57I CTGAAG 1 cut(s) 581
Eco72I CACGTG 1 cut(s) 1006
Eco88I CYCGRG 2 cut(s) 371, 947
EcoICRI GAGCTC 1 cut(s) 802
EcoRII CCWGG 3 cut(s) 511, 665, 959
EcoT14I CCWWGG 1 cut(s) 417
EcoT22I ATGCAT 1 cut(s) 733
EcoT38I GRGCYC 2 cut(s) 372, 804
ErhI CCWWGG 1 cut(s) 417
FaeI CATG 7 cut(s) 13, 350, 502, 560, 700, 731, 920
FalI AAGNNNNNCTT 4 cut(s) 33, 65, 522, 554
FaqI GGGAC 2 cut(s) 311, 942
FatI CATG 7 cut(s) 9, 346, 498, 556, 696, 727, 916
FblI GTMKAC 1 cut(s) 525
Fnu4HI GCNGC 5 cut(s) 239, 242, 678, 770, 1029
FokI GGATG 1 cut(s) 683
FriOI GRGCYC 2 cut(s) 372, 804
Fsp4HI GCNGC 5 cut(s) 239, 242, 678, 770, 1029
FspBI CTAG 2 cut(s) 722, 858
GlaI GCGC 1 cut(s) 36
GluI GCNGC 5 cut(s) 239, 242, 678, 770, 1029
HaeII RGCGCY 1 cut(s) 38
HaeIII GGCC 1 cut(s) 777
HapII CCGG 3 cut(s) 948, 990, 1032
HgaI GACGC 2 cut(s) 198, 901
HhaI GCGC 1 cut(s) 37
Hin1I GRCGYC 1 cut(s) 912
Hin1II CATG 7 cut(s) 13, 350, 502, 560, 700, 731, 920
Hin6I GCGC 1 cut(s) 35
HinP1I GCGC 1 cut(s) 35
HincII GTYRAC 1 cut(s) 654
HindII GTYRAC 1 cut(s) 654
HindIII AAGCTT 1 cut(s) 593
HinfI GANTC 1 cut(s) 295
HpaII CCGG 3 cut(s) 948, 990, 1032
HphI GGTGA 2 cut(s) 16, 204
Hpy166II GTNNAC 4 cut(s) 7, 526, 654, 758
Hpy188I TCNGA 1 cut(s) 130
Hpy188III TCNNGA 3 cut(s) 292, 473, 895
Hpy8I GTNNAC 4 cut(s) 7, 526, 654, 758
HpyAV CCTTC 4 cut(s) 135, 194, 479, 496
HpyCH4III ACNGT 6 cut(s) 168, 220, 439, 606, 835, 847
HpyCH4IV ACGT 4 cut(s) 630, 792, 978, 1005
HpyCH4V TGCA 9 cut(s) 53, 107, 158, 587, 623, 677, 731, 809, 814
HpyF10VI GCNNNNNNNGC 3 cut(s) 247, 508, 1057
HpyF3I CTNAG 5 cut(s) 330, 408, 520, 539, 1044
HpySE526I ACGT 4 cut(s) 630, 792, 978, 1005
Hsp92I GRCGYC 1 cut(s) 912
Hsp92II CATG 7 cut(s) 13, 350, 502, 560, 700, 731, 920
HspAI GCGC 1 cut(s) 35
Kzo9I GATC 3 cut(s) 445, 616, 783
LmnI GCTCC 2 cut(s) 424, 668
Lsp1109I GCAGC 4 cut(s) 250, 253, 689, 781
LweI GCATC 1 cut(s) 92
MaeI CTAG 2 cut(s) 722, 858
MaeII ACGT 4 cut(s) 630, 792, 978, 1005
MaeIII GTNAC 3 cut(s) 210, 905, 1001
MalI GATC 3 cut(s) 447, 618, 785
MboI GATC 3 cut(s) 445, 616, 783
MboII GAAGA 5 cut(s) 53, 174, 206, 742, 843
MflI RGATCY 1 cut(s) 783
MhlI GDGCHC 3 cut(s) 372, 611, 804
MlyI GAGTC 1 cut(s) 289
MmeI TCCRAC 1 cut(s) 339
MnlI CCTC 9 cut(s) 14, 134, 177, 529, 653, 701, 869, 1009, 1050
Mph1103I ATGCAT 1 cut(s) 733
MspI CCGG 3 cut(s) 948, 990, 1032
MspR9I CCNGG 6 cut(s) 513, 667, 948, 949, 961, 991
MvaI CCWGG 3 cut(s) 513, 667, 961
MwoI GCNNNNNNNGC 3 cut(s) 247, 508, 1057
NciI CCSGG 3 cut(s) 948, 949, 991
NdeII GATC 3 cut(s) 445, 616, 783
NlaIII CATG 7 cut(s) 13, 350, 502, 560, 700, 731, 920
NlaIV GGNNCC 6 cut(s) 265, 327, 517, 664, 871, 924
NmuCI GTSAC 3 cut(s) 210, 905, 1001
NsiI ATGCAT 1 cut(s) 733
NspI RCATGY 2 cut(s) 502, 731
PaeI GCATGC 1 cut(s) 502
PaeR7I CTCGAG 1 cut(s) 371
PasI CCCWGGG 1 cut(s) 960
PflFI GACNNNGTC 1 cut(s) 911
PkrI GCNGC 5 cut(s) 240, 243, 679, 771, 1030
PleI GAGTC 1 cut(s) 289
PmaCI CACGTG 1 cut(s) 1006
PmlI CACGTG 1 cut(s) 1006
PpsI GAGTC 1 cut(s) 289
Ppu21I YACGTR 2 cut(s) 631, 1006
Psp124BI GAGCTC 1 cut(s) 804
Psp6I CCWGG 3 cut(s) 511, 665, 959
PspCI CACGTG 1 cut(s) 1006
PspGI CCWGG 3 cut(s) 511, 665, 959
PspN4I GGNNCC 6 cut(s) 265, 327, 517, 664, 871, 924
PspPI GGNCC 2 cut(s) 325, 1023
PspXI VCTCGAGB 1 cut(s) 371
PstI CTGCAG 1 cut(s) 816
PstNI CAGNNNCTG 2 cut(s) 104, 604
PsuI RGATCY 1 cut(s) 783
PsyI GACNNNGTC 1 cut(s) 911
RsaI GTAC 6 cut(s) 79, 145, 276, 633, 687, 966
RsaNI GTAC 6 cut(s) 78, 144, 275, 632, 686, 965
SacI GAGCTC 1 cut(s) 804
SatI GCNGC 5 cut(s) 239, 242, 678, 770, 1029
Sau3AI GATC 3 cut(s) 445, 616, 783
Sau96I GGNCC 2 cut(s) 325, 1023
SchI GAGTC 1 cut(s) 289
ScrFI CCNGG 6 cut(s) 513, 667, 948, 949, 961, 991
SduI GDGCHC 3 cut(s) 372, 611, 804
SfaNI GCATC 1 cut(s) 92
SfcI CTRYAG 1 cut(s) 812
Sfr274I CTCGAG 1 cut(s) 371
SgrAI CRCCGGYG 1 cut(s) 1031
SinI GGWCC 2 cut(s) 325, 1023
SlaI CTCGAG 1 cut(s) 371
SmaI CCCGGG 1 cut(s) 949
SmlI CTYRAG 3 cut(s) 147, 371, 779
SmoI CTYRAG 3 cut(s) 147, 371, 779
SnaBI TACGTA 1 cut(s) 631
SphI GCATGC 1 cut(s) 502
SsiI CCGC 2 cut(s) 1026, 1029
SspMI CTAG 2 cut(s) 722, 858
SstI GAGCTC 1 cut(s) 804
StyD4I CCNGG 6 cut(s) 511, 665, 946, 947, 959, 989
StyI CCWWGG 1 cut(s) 417
TaaI ACNGT 6 cut(s) 168, 220, 439, 606, 835, 847
TaiI ACGT 4 cut(s) 633, 795, 981, 1008
TaqI TCGA 1 cut(s) 372
TatI WGTACW 1 cut(s) 77
TauI GCSGC 1 cut(s) 1031
TscAI CASTG 2 cut(s) 816, 840
TseFI GTSAC 3 cut(s) 210, 905, 1001
TseI GCWGC 4 cut(s) 238, 241, 677, 769
Tsp45I GTSAC 3 cut(s) 210, 905, 1001
TspDTI ATGAA 4 cut(s) 26, 213, 245, 545
TspGWI ACGGA 1 cut(s) 703
TspMI CCCGGG 1 cut(s) 947
TspRI CASTG 2 cut(s) 816, 840
Tth111I GACNNNGTC 1 cut(s) 911
VpaK11BI GGWCC 2 cut(s) 325, 1023
XceI RCATGY 2 cut(s) 502, 731
XhoI CTCGAG 1 cut(s) 371
XmaI CCCGGG 1 cut(s) 947
XmiI GTMKAC 1 cut(s) 525
XspI CTAG 2 cut(s) 722, 858
Zsp2I ATGCAT 1 cut(s) 733
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.