Rh3DG332200

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0005205
Physical Location & Seq
Reverse (-)
36816882 .. 36817247
366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG332200.1

Sequence Viewer

Length: 366 bp
ATGGAGATTCTATCATGGAATATCAGAGGCACTAAAGACCCTAAGAAATTTAGGGCTTTGGAGTCGCTTATACAGCAGAGACGTCCTAGTATTGTTCTCTTGATCGAGACAAAGTGTAGAGACAAGCAATCTTTTGAACGGTTATGCAACCATTTGGGTTTTTGTCATGGCATAATGCAAGAGTGTTCTGAAATGGGTGGAGGAGGTTTGATGCTATTGTGGATGGATGAGATCGATCTTCATCTCCGGTCGCACTCAATGCATCACATTGATGTAGACGTTGTGCTGCCGGAATTTGAGGAAGGGAGATGGCGTCTCACAGGTTTTTATGGGCATCCAGATGCTCATCTCCTCTCTGCGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

14.03

Weight (kDa)

6.22

Isoelectric Point (pI)

73.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 4 - 105 2e-08 Endonuclease/Exonuclease/phosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 85
AccI GTMKAC 1 cut(s) 276
AcsI RAATTY 2 cut(s) 47, 293
AcyI GRCGYC 2 cut(s) 82, 313
AgsI TTSAA 1 cut(s) 137
Alw26I GTCTC 4 cut(s) 73, 101, 114, 320
ApeKI GCWGC 1 cut(s) 286
ApoI RAATTY 2 cut(s) 47, 293
BbvI GCAGC 1 cut(s) 273
BccI CCATC 2 cut(s) 217, 303
BcoDI GTCTC 4 cut(s) 73, 101, 114, 320
BfaI CTAG 1 cut(s) 87
BisI GCNGC 1 cut(s) 287
BlsI GCNGC 1 cut(s) 288
BmsI GCATC 4 cut(s) 201, 271, 331, 343
Bsa29I ATCGAT 1 cut(s) 234
BsaBI GATNNNNATC 2 cut(s) 240, 345
BsaHI GRCGYC 2 cut(s) 82, 313
BsaWI WCCGGW 1 cut(s) 246
BsaXI ACNNNNNCTCC 2 cut(s) 298, 328
Bse8I GATNNNNATC 2 cut(s) 240, 345
BseCI ATCGAT 1 cut(s) 234
BseGI GGATG 3 cut(s) 228, 232, 334
BseJI GATNNNNATC 2 cut(s) 240, 345
BseRI GAGGAG 2 cut(s) 216, 341
BseXI GCAGC 1 cut(s) 273
Bsh1285I CGRYCG 1 cut(s) 251
BshVI ATCGAT 1 cut(s) 234
BsiEI CGRYCG 1 cut(s) 251
BsiSI CCGG 2 cut(s) 247, 290
BsmAI GTCTC 4 cut(s) 73, 101, 114, 320
BsmBI CGTCTC 2 cut(s) 73, 320
Bsp143I GATC 3 cut(s) 102, 231, 235
BspDI ATCGAT 1 cut(s) 234
BspHI TCATGA 1 cut(s) 362
BssMI GATC 3 cut(s) 102, 231, 235
BssNI GRCGYC 2 cut(s) 82, 313
Bst4CI ACNGT 1 cut(s) 141
BstACI GRCGYC 2 cut(s) 82, 313
BstAPI GCANNNNNTGC 1 cut(s) 259
BstDEI CTNAG 1 cut(s) 42
BstF5I GGATG 3 cut(s) 228, 232, 334
BstKTI GATC 3 cut(s) 105, 234, 238
BstMAI GTCTC 4 cut(s) 73, 101, 114, 320
BstMBI GATC 3 cut(s) 102, 231, 235
BstMCI CGRYCG 1 cut(s) 251
BstMWI GCNNNNNNNGC 2 cut(s) 73, 259
BstV1I GCAGC 1 cut(s) 273
Bsu15I ATCGAT 1 cut(s) 234
BsuTUI ATCGAT 1 cut(s) 234
BtsCI GGATG 3 cut(s) 228, 232, 334
CciI TCATGA 1 cut(s) 362
ClaI ATCGAT 1 cut(s) 234
CseI GACGC 2 cut(s) 302, 348
CviAII CATG 3 cut(s) 15, 167, 363
CviJI RGCY 1 cut(s) 56
CviKI_1 RGCY 1 cut(s) 56
DdeI CTNAG 1 cut(s) 42
DpnI GATC 3 cut(s) 104, 233, 237
DpnII GATC 3 cut(s) 102, 231, 235
EcoT22I ATGCAT 1 cut(s) 264
Esp3I CGTCTC 2 cut(s) 73, 320
FaeI CATG 3 cut(s) 18, 170, 366
FaiI YATR 7 cut(s) 16, 71, 145, 168, 173, 330, 364
FatI CATG 3 cut(s) 14, 166, 362
FblI GTMKAC 1 cut(s) 276
Fnu4HI GCNGC 1 cut(s) 287
FokI GGATG 3 cut(s) 235, 239, 321
Fsp4HI GCNGC 1 cut(s) 287
FspBI CTAG 1 cut(s) 87
GluI GCNGC 1 cut(s) 287
HapII CCGG 2 cut(s) 247, 290
HgaI GACGC 2 cut(s) 302, 348
Hin1I GRCGYC 2 cut(s) 82, 313
Hin1II CATG 3 cut(s) 18, 170, 366
HinfI GANTC 2 cut(s) 7, 62
HpaII CCGG 2 cut(s) 247, 290
Hpy166II GTNNAC 1 cut(s) 277
Hpy188I TCNGA 2 cut(s) 26, 190
Hpy188III TCNNGA 4 cut(s) 100, 106, 338, 363
Hpy8I GTNNAC 1 cut(s) 277
HpyAV CCTTC 1 cut(s) 296
HpyCH4III ACNGT 1 cut(s) 141
HpyCH4IV ACGT 2 cut(s) 82, 279
HpyCH4V TGCA 3 cut(s) 147, 178, 262
HpyF10VI GCNNNNNNNGC 2 cut(s) 73, 259
HpyF3I CTNAG 1 cut(s) 42
HpySE526I ACGT 2 cut(s) 82, 279
Hsp92I GRCGYC 2 cut(s) 82, 313
Hsp92II CATG 3 cut(s) 18, 170, 366
Kzo9I GATC 3 cut(s) 102, 231, 235
LpnPI CCDG 4 cut(s) 260, 303, 306, 351
Lsp1109I GCAGC 1 cut(s) 273
LweI GCATC 4 cut(s) 201, 271, 331, 343
MaeI CTAG 1 cut(s) 87
MaeII ACGT 2 cut(s) 82, 279
MalI GATC 3 cut(s) 104, 233, 237
MboI GATC 3 cut(s) 102, 231, 235
MboII GAAGA 1 cut(s) 230
MluCI AATT 2 cut(s) 47, 293
MlyI GAGTC 1 cut(s) 71
MnlI CCTC 5 cut(s) 20, 194, 197, 292, 362
Mph1103I ATGCAT 1 cut(s) 264
MslI CAYNNNNRTG 2 cut(s) 270, 339
MspI CCGG 2 cut(s) 247, 290
MwoI GCNNNNNNNGC 2 cut(s) 73, 259
NdeII GATC 3 cut(s) 102, 231, 235
NlaIII CATG 3 cut(s) 18, 170, 366
NsiI ATGCAT 1 cut(s) 264
PagI TCATGA 1 cut(s) 362
PfeI GAWTC 1 cut(s) 7
PkrI GCNGC 1 cut(s) 288
PleI GAGTC 1 cut(s) 70
PpsI GAGTC 1 cut(s) 70
RseI CAYNNNNRTG 2 cut(s) 270, 339
SatI GCNGC 1 cut(s) 287
Sau3AI GATC 3 cut(s) 102, 231, 235
SchI GAGTC 1 cut(s) 71
SetI ASST 4 cut(s) 85, 208, 282, 325
SfaNI GCATC 4 cut(s) 201, 271, 331, 343
SmiMI CAYNNNNRTG 2 cut(s) 270, 339
Sse9I AATT 2 cut(s) 47, 293
SspMI CTAG 1 cut(s) 87
TaaI ACNGT 1 cut(s) 141
TaiI ACGT 2 cut(s) 85, 282
TaqI TCGA 2 cut(s) 105, 234
TasI AATT 2 cut(s) 47, 293
TfiI GAWTC 1 cut(s) 7
TseI GCWGC 1 cut(s) 286
TspDTI ATGAA 1 cut(s) 230
XapI RAATTY 2 cut(s) 47, 293
XmiI GTMKAC 1 cut(s) 276
XspI CTAG 1 cut(s) 87
ZraI GACGTC 1 cut(s) 83
Zsp2I ATGCAT 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.