Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0005205

Physical Location & Seq

Genomic Coordinates Forward (+)

47744710 .. 47748187

Gene Structure 3478 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG370300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGCAGGAGTGTAGCGATAATGGATGGGGTGGTCTGATGCTGTTATGGGGTGAGGACATTGATATTCATCTTCGCTCCTATTCCCAGAACTTTGTGGATTCAGATGTGGTGTTGCCGGTGTCTGAAGGGGTTTGTTGCCGGATCACTGGTTTTTACAGGCATCCAGAGACAGCGCAATGTCATGTCACTTGGGATTTACTGTGGCAACTTGCCATGCTTCCCGAGGTAGATAAGTGGGTAGTTAGTCATGTGATTGATAAGCAAGGTCTCGCCGCTAGTGGTGGTTGTGTAGGGCAAGAGCGAATCGAGCAAGTGCTTCACCATTTGGTACTCCTAAGGAATCAGGTTAAGCGAGTTGTTCTGGATGAACTTGGCCTCCCCGATAAGCTTGGAGAGGAGGGAAATGAAGGAGTTAATGTCAATGCCGAAGAGATTAACACAAGTTTAGATCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1

Protein Analysis

151

Amino Acids

16.87

Weight (kDa)

4.57

Isoelectric Point (pI)

41.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005205)

Species	Orthologous Gene IDs
malus_domestica	MD07G1185800.v1.1
rosa_chinensis	RchiOBHm_Chr1g0327941
rosa_laevigata	RLG00000018282
rosa_multiflora	Rmu_co8368975.1_g000001 Rmu_sc0002900.1_g000003 Rmu_sc0003410.1_g000003 Rmu_sc0009365.1_g000011 Rmu_sc0011124.1_g000001 Rmu_sc0011806.1_g000003 Rmu_sc0014304.1_g000001 Rmu_sc0026800.1_g000001 Rmu_ssc0000026.1_g000005
rosa_roxburghii	Rroxscaffold_1G00047290 Rroxscaffold_5G00349170 Rroxscaffold_7G00169450
rosa_rugosa	Rorug02G0307300
rosa_samantha	Rh1CG170200 Rh2BG294200 Rh2BG331900 Rh2CG478300 Rh2CG514100 Rh3DG332200 Rh4BG389200 Rh4CG173800 Rh5CG378500 Rh7AG370300 Rh7AG371300 Rh7BG367300 Rh7CG389100 Rh7CG389900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	273
AclWI	GGATC	2 cut(s)	149, 443
AcuI	CTGAAG	1 cut(s)	144
AfaI	GTAC	1 cut(s)	330
AloI	GAACNNNNNNTCC	2 cut(s)	360, 392
AluBI	AGCT	1 cut(s)	388
AluI	AGCT	1 cut(s)	388
Alw26I	GTCTC	2 cut(s)	161, 272
AlwI	GGATC	2 cut(s)	149, 443
Ama87I	CYCGRG	1 cut(s)	221
AoxI	GGCC	1 cut(s)	373
AspLEI	GCGC	1 cut(s)	175
AsuHPI	GGTGA	2 cut(s)	62, 311
AvaI	CYCGRG	1 cut(s)	221
AxyI	CCTNAGG	1 cut(s)	335
BccI	CCATC	1 cut(s)	18
BcoDI	GTCTC	2 cut(s)	161, 272
BfaI	CTAG	1 cut(s)	276
BisI	GCNGC	1 cut(s)	273
BlsI	GCNGC	1 cut(s)	274
BmeT110I	CYCGRG	1 cut(s)	221
BmsI	GCATC	2 cut(s)	27, 169
BsaBI	GATNNNNATC	1 cut(s)	66
BsaI	GGTCTC	1 cut(s)	272
BsaJI	CCNNGG	1 cut(s)	222
BsaXI	ACNNNNNCTCC	4 cut(s)	360, 390, 402, 432
Bse118I	RCCGGY	1 cut(s)	115
Bse1I	ACTGG	1 cut(s)	151
Bse21I	CCTNAGG	1 cut(s)	335
Bse3DI	GCAATG	1 cut(s)	182
Bse8I	GATNNNNATC	1 cut(s)	66
BseDI	CCNNGG	1 cut(s)	222
BseGI	GGATG	3 cut(s)	29, 160, 370
BseJI	GATNNNNATC	1 cut(s)	66
BseMI	GCAATG	1 cut(s)	182
BseNI	ACTGG	1 cut(s)	151
BseRI	GAGGAG	1 cut(s)	410
BshFI	GGCC	1 cut(s)	375
BsiHKCI	CYCGRG	1 cut(s)	221
BsiSI	CCGG	2 cut(s)	116, 139
BsmAI	GTCTC	2 cut(s)	161, 272
BsnI	GGCC	1 cut(s)	375
Bso31I	GGTCTC	1 cut(s)	272
BsoBI	CYCGRG	1 cut(s)	221
Bsp143I	GATC	2 cut(s)	141, 448
BspACI	CCGC	1 cut(s)	273
BspANI	GGCC	1 cut(s)	375
BspPI	GGATC	2 cut(s)	149, 443
BspTNI	GGTCTC	1 cut(s)	272
BsrDI	GCAATG	1 cut(s)	182
BsrFI	RCCGGY	1 cut(s)	115
BsrI	ACTGG	1 cut(s)	151
BssAI	RCCGGY	1 cut(s)	115
BssECI	CCNNGG	1 cut(s)	222
BssMI	GATC	2 cut(s)	141, 448
Bst4CI	ACNGT	1 cut(s)	201
Bst6I	CTCTTC	1 cut(s)	423
BstDEI	CTNAG	1 cut(s)	335
BstF5I	GGATG	3 cut(s)	29, 160, 370
BstHHI	GCGC	1 cut(s)	175
BstKTI	GATC	2 cut(s)	144, 451
BstMAI	GTCTC	2 cut(s)	161, 272
BstMBI	GATC	2 cut(s)	141, 448
BstMWI	GCNNNNNNNGC	1 cut(s)	307
BstX2I	RGATCY	1 cut(s)	448
BstYI	RGATCY	1 cut(s)	448
Bsu36I	CCTNAGG	1 cut(s)	335
BsuRI	GGCC	1 cut(s)	375
BtsCI	GGATG	3 cut(s)	29, 160, 370
BtsIMutI	CAGTG	1 cut(s)	144
CfoI	GCGC	1 cut(s)	175
Cfr10I	RCCGGY	1 cut(s)	115
Csp6I	GTAC	1 cut(s)	329
CviAII	CATG	4 cut(s)	182, 214, 248, 453
CviJI	RGCY	2 cut(s)	375, 388
CviKI_1	RGCY	2 cut(s)	375, 388
CviQI	GTAC	1 cut(s)	329
DdeI	CTNAG	1 cut(s)	335
DpnI	GATC	2 cut(s)	143, 450
DpnII	GATC	2 cut(s)	141, 448
Eam1104I	CTCTTC	1 cut(s)	423
EarI	CTCTTC	1 cut(s)	423
Eco31I	GGTCTC	1 cut(s)	272
Eco57I	CTGAAG	1 cut(s)	144
Eco81I	CCTNAGG	1 cut(s)	335
Eco88I	CYCGRG	1 cut(s)	221
FaeI	CATG	4 cut(s)	185, 217, 251, 456
FaiI	YATR	5 cut(s)	46, 183, 215, 249, 454
FatI	CATG	4 cut(s)	181, 213, 247, 452
Fnu4HI	GCNGC	1 cut(s)	273
FokI	GGATG	3 cut(s)	36, 147, 377
Fsp4HI	GCNGC	1 cut(s)	273
FspBI	CTAG	1 cut(s)	276
GlaI	GCGC	1 cut(s)	174
GluI	GCNGC	1 cut(s)	273
HaeIII	GGCC	1 cut(s)	375
HapII	CCGG	2 cut(s)	116, 139
HhaI	GCGC	1 cut(s)	175
Hin1II	CATG	4 cut(s)	185, 217, 251, 456
Hin6I	GCGC	1 cut(s)	173
HinP1I	GCGC	1 cut(s)	173
HindIII	AAGCTT	1 cut(s)	386
HinfI	GANTC	3 cut(s)	98, 303, 340
HpaII	CCGG	2 cut(s)	116, 139
HphI	GGTGA	2 cut(s)	62, 311
Hpy188I	TCNGA	3 cut(s)	36, 103, 124
Hpy188III	TCNNGA	3 cut(s)	164, 221, 362
HpyAV	CCTTC	2 cut(s)	119, 401
HpyCH4III	ACNGT	1 cut(s)	201
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	307
HpyF3I	CTNAG	1 cut(s)	335
Hsp92II	CATG	4 cut(s)	185, 217, 251, 456
HspAI	GCGC	1 cut(s)	173
Kzo9I	GATC	2 cut(s)	141, 448
LmnI	GCTCC	1 cut(s)	80
LpnPI	CCDG	8 cut(s)	98, 129, 132, 142, 152, 177, 329, 347
LweI	GCATC	2 cut(s)	27, 169
MaeI	CTAG	1 cut(s)	276
MaeIII	GTNAC	1 cut(s)	184
MalI	GATC	2 cut(s)	143, 450
MboI	GATC	2 cut(s)	141, 448
MboII	GAAGA	2 cut(s)	62, 440
MflI	RGATCY	1 cut(s)	448
MnlI	CCTC	5 cut(s)	46, 217, 386, 388, 391
MseI	TTAA	3 cut(s)	348, 414, 435
MspI	CCGG	2 cut(s)	116, 139
MwoI	GCNNNNNNNGC	1 cut(s)	307
NdeII	GATC	2 cut(s)	141, 448
NlaIII	CATG	4 cut(s)	185, 217, 251, 456
NmuCI	GTSAC	1 cut(s)	184
PfeI	GAWTC	3 cut(s)	98, 303, 340
PkrI	GCNGC	1 cut(s)	274
PsuI	RGATCY	1 cut(s)	448
RsaI	GTAC	1 cut(s)	330
RsaNI	GTAC	1 cut(s)	329
SaqAI	TTAA	3 cut(s)	348, 414, 435
SatI	GCNGC	1 cut(s)	273
Sau3AI	GATC	2 cut(s)	141, 448
SetI	ASST	4 cut(s)	228, 268, 348, 390
SfaNI	GCATC	2 cut(s)	27, 169
SsiI	CCGC	1 cut(s)	273
SspMI	CTAG	1 cut(s)	276
TaaI	ACNGT	1 cut(s)	201
TaqI	TCGA	1 cut(s)	306
TauI	GCSGC	1 cut(s)	275
TfiI	GAWTC	3 cut(s)	98, 303, 340
Tru1I	TTAA	3 cut(s)	348, 414, 435
Tru9I	TTAA	3 cut(s)	348, 414, 435
TscAI	CASTG	1 cut(s)	151
TseFI	GTSAC	1 cut(s)	184
Tsp45I	GTSAC	1 cut(s)	184
TspDTI	ATGAA	3 cut(s)	56, 381, 420
TspRI	CASTG	1 cut(s)	151
XspI	CTAG	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.