Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005205

Physical Location & Seq

Genomic Coordinates Forward (+)

66826579 .. 66830099

Gene Structure 3521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00047290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 183 bp

ATGGCTTTGTCGAATCAGCAGACCGTGGAGTACCCGAGCTTCAAGCTCGTAATCGTTGGTGATGGTGGAACAGGGAAAACAACCTTTGTGAAGAGACATCTTACTGGTGAATTTGAGAAGAACAAAAGAAGAGCTGATGTTCCTGTAACAACCGGAAAAAAAAAATACAGAAGGCGGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000054 GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005794 GO:0006403 GO:0006405 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0010035 GO:0010038 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017038 GO:0017076 GO:0017111 GO:0019001 GO:0022613 GO:0031503 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0033036 GO:0033365 GO:0033750 GO:0034504 GO:0034613 GO:0035639 GO:0036094 GO:0042221 GO:0042254 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046686 GO:0046907 GO:0050657 GO:0050658 GO:0050896 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 ko05166 ko05169 map03008 map03013 map05166 map05169

Pfam Domains

Protein Families

Ras

Protein Analysis

60

Amino Acids

6.84

Weight (kDa)

10.55

Isoelectric Point (pI)

53.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Roc	PF08477	15 - 44	3e-06	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0005205)

Species	Orthologous Gene IDs
malus_domestica	MD07G1185800.v1.1
rosa_chinensis	RchiOBHm_Chr1g0327941
rosa_laevigata	RLG00000018282
rosa_multiflora	Rmu_co8368975.1_g000001 Rmu_sc0002900.1_g000003 Rmu_sc0003410.1_g000003 Rmu_sc0009365.1_g000011 Rmu_sc0011124.1_g000001 Rmu_sc0011806.1_g000003 Rmu_sc0014304.1_g000001 Rmu_sc0026800.1_g000001 Rmu_ssc0000026.1_g000005
rosa_roxburghii	Rroxscaffold_1G00047290 Rroxscaffold_5G00349170 Rroxscaffold_7G00169450
rosa_rugosa	Rorug02G0307300
rosa_samantha	Rh1CG170200 Rh2BG294200 Rh2BG331900 Rh2CG478300 Rh2CG514100 Rh3DG332200 Rh4BG389200 Rh4CG173800 Rh5CG378500 Rh7AG370300 Rh7AG371300 Rh7BG367300 Rh7CG389100 Rh7CG389900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	175
AcsI	RAATTY	1 cut(s)	110
AfaI	GTAC	1 cut(s)	32
AgsI	TTSAA	1 cut(s)	43
AluBI	AGCT	3 cut(s)	39, 46, 134
AluI	AGCT	3 cut(s)	39, 46, 134
Alw26I	GTCTC	1 cut(s)	88
Ama87I	CYCGRG	1 cut(s)	34
ApoI	RAATTY	1 cut(s)	110
AsuHPI	GGTGA	2 cut(s)	71, 119
AvaI	CYCGRG	1 cut(s)	34
BarI	GAAGNNNNNNTAC	2 cut(s)	23, 55
BccI	CCATC	1 cut(s)	56
BcoDI	GTCTC	1 cut(s)	88
BmeT110I	CYCGRG	1 cut(s)	34
BsaJI	CCNNGG	1 cut(s)	24
BsaWI	WCCGGW	1 cut(s)	152
Bse1I	ACTGG	1 cut(s)	109
BseDI	CCNNGG	1 cut(s)	24
BseNI	ACTGG	1 cut(s)	109
BsiHKCI	CYCGRG	1 cut(s)	34
BsiSI	CCGG	1 cut(s)	153
BsmAI	GTCTC	1 cut(s)	88
BsoBI	CYCGRG	1 cut(s)	34
BspACI	CCGC	1 cut(s)	175
BspQI	GCTCTTC	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	109
BssECI	CCNNGG	1 cut(s)	24
Bst4CI	ACNGT	1 cut(s)	25
Bst6I	CTCTTC	2 cut(s)	86, 124
BstDSI	CCRYGG	1 cut(s)	24
BstMAI	GTCTC	1 cut(s)	88
BtgI	CCRYGG	1 cut(s)	24
Csp6I	GTAC	1 cut(s)	31
CviJI	RGCY	4 cut(s)	5, 39, 46, 134
CviKI_1	RGCY	4 cut(s)	5, 39, 46, 134
CviQI	GTAC	1 cut(s)	31
Eam1104I	CTCTTC	2 cut(s)	86, 124
EarI	CTCTTC	2 cut(s)	86, 124
Eco88I	CYCGRG	1 cut(s)	34
HapII	CCGG	1 cut(s)	153
HinfI	GANTC	1 cut(s)	13
HpaII	CCGG	1 cut(s)	153
HphI	GGTGA	2 cut(s)	71, 119
HpyAV	CCTTC	1 cut(s)	165
HpyCH4III	ACNGT	1 cut(s)	25
LguI	GCTCTTC	1 cut(s)	124
LpnPI	CCDG	4 cut(s)	57, 90, 156, 166
MaeIII	GTNAC	1 cut(s)	145
MboII	GAAGA	3 cut(s)	103, 130, 141
MluCI	AATT	1 cut(s)	110
MspI	CCGG	1 cut(s)	153
PciSI	GCTCTTC	1 cut(s)	124
PfeI	GAWTC	1 cut(s)	13
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
SapI	GCTCTTC	1 cut(s)	124
SetI	ASST	4 cut(s)	41, 48, 86, 136
SgeI	CNNG	9 cut(s)	37, 46, 48, 55, 59, 84, 117, 155, 165
Sse9I	AATT	1 cut(s)	110
SsiI	CCGC	1 cut(s)	175
TaaI	ACNGT	1 cut(s)	25
TaqI	TCGA	1 cut(s)	11
TasI	AATT	1 cut(s)	110
TfiI	GAWTC	1 cut(s)	13
XapI	RAATTY	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.