Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0005205

Physical Location & Seq

Genomic Coordinates Reverse (-)

64345118 .. 64349946

Gene Structure 4829 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG478300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGCGCGAGAAGATAGCCGTTAGCGCGGTGAGGAGGAGCGATCGGGAGGTGAGCCTAGGGTGGGAGTTCGAGATCGGAAATTTGGACAAAGATCGGACACTCAGCTTGATTCCGGAATCGACCTGCGCCTCTGACTCCAATCTGAATCGCGCCGGCGGCGACGATGCGCTCACCATTCACGAAGACGACGGCGACGGATCTAGCTTGAATCTCCGAAGCAGTAGCACTGCAAAAAAATCTCCAGTAGCACTCAAATTGATTCCGGAATCGACCTTCGCCTCTTATTCTAATCTGAATCGCGCCGGCGACGACGATGCGCTCACCATTCACGAAGACGACGGCGACGATCTGATGGGCTTCGTGACCGTGAATTCCGAAAACGTTAAGGATTGTGCCGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

133

Amino Acids

14.32

Weight (kDa)

4.41

Isoelectric Point (pI)

42.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005205)

Species	Orthologous Gene IDs
malus_domestica	MD07G1185800.v1.1
rosa_chinensis	RchiOBHm_Chr1g0327941
rosa_laevigata	RLG00000018282
rosa_multiflora	Rmu_co8368975.1_g000001 Rmu_sc0002900.1_g000003 Rmu_sc0003410.1_g000003 Rmu_sc0009365.1_g000011 Rmu_sc0011124.1_g000001 Rmu_sc0011806.1_g000003 Rmu_sc0014304.1_g000001 Rmu_sc0026800.1_g000001 Rmu_ssc0000026.1_g000005
rosa_roxburghii	Rroxscaffold_1G00047290 Rroxscaffold_5G00349170 Rroxscaffold_7G00169450
rosa_rugosa	Rorug02G0307300
rosa_samantha	Rh1CG170200 Rh2BG294200 Rh2BG331900 Rh2CG478300 Rh2CG514100 Rh3DG332200 Rh4BG389200 Rh4CG173800 Rh5CG378500 Rh7AG370300 Rh7AG371300 Rh7BG367300 Rh7CG389100 Rh7CG389900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	131
AccII	CGCG	4 cut(s)	6, 26, 150, 300
AccIII	TCCGGA	2 cut(s)	112, 262
AciI	CCGC	2 cut(s)	26, 156
AclI	AACGTT	1 cut(s)	381
AclWI	GGATC	1 cut(s)	205
AcsI	RAATTY	2 cut(s)	79, 370
AfiI	CCNNNNNNNGG	1 cut(s)	61
AgsI	TTSAA	1 cut(s)	208
AluBI	AGCT	2 cut(s)	105, 204
AluI	AGCT	2 cut(s)	105, 204
AlwI	GGATC	1 cut(s)	205
Aor13HI	TCCGGA	2 cut(s)	112, 262
ApoI	RAATTY	2 cut(s)	79, 370
AspA2I	CCTAGG	1 cut(s)	55
AspLEI	GCGC	7 cut(s)	6, 26, 128, 152, 169, 302, 319
AsuHPI	GGTGA	4 cut(s)	40, 61, 163, 313
AvrII	CCTAGG	1 cut(s)	55
BbsI	GAAGAC	2 cut(s)	189, 339
BccI	CCATC	1 cut(s)	346
BceAI	ACGGC	4 cut(s)	2, 205, 355, 380
BcgI	CGANNNNNNTGC	2 cut(s)	296, 330
BfaI	CTAG	2 cut(s)	56, 201
BfuAI	ACCTGC	1 cut(s)	131
BisI	GCNGC	1 cut(s)	157
BlnI	CCTAGG	1 cut(s)	55
BlsI	GCNGC	1 cut(s)	158
BmsI	GCATC	2 cut(s)	154, 304
BpiI	GAAGAC	2 cut(s)	189, 339
BpmI	CTGGAG	1 cut(s)	225
BsaJI	CCNNGG	1 cut(s)	55
BsaWI	WCCGGW	2 cut(s)	112, 262
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
Bse118I	RCCGGY	2 cut(s)	152, 302
Bse1I	ACTGG	1 cut(s)	242
BseAI	TCCGGA	2 cut(s)	112, 262
BseDI	CCNNGG	1 cut(s)	55
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseMII	CTCAG	1 cut(s)	115
BseNI	ACTGG	1 cut(s)	242
BseRI	GAGGAG	2 cut(s)	46, 49
Bsh1236I	CGCG	4 cut(s)	6, 26, 150, 300
Bsh1285I	CGRYCG	1 cut(s)	43
BsiEI	CGRYCG	1 cut(s)	43
BsiSI	CCGG	4 cut(s)	113, 153, 263, 303
BslI	CCNNNNNNNGG	1 cut(s)	61
Bsp13I	TCCGGA	2 cut(s)	112, 262
Bsp143I	GATC	5 cut(s)	40, 72, 91, 197, 346
BspACI	CCGC	2 cut(s)	26, 156
BspCNI	CTCAG	1 cut(s)	114
BspEI	TCCGGA	2 cut(s)	112, 262
BspFNI	CGCG	4 cut(s)	6, 26, 150, 300
BspMI	ACCTGC	1 cut(s)	131
BspPI	GGATC	1 cut(s)	205
BsrFI	RCCGGY	2 cut(s)	152, 302
BsrI	ACTGG	1 cut(s)	242
BssAI	RCCGGY	2 cut(s)	152, 302
BssECI	CCNNGG	1 cut(s)	55
BssMI	GATC	5 cut(s)	40, 72, 91, 197, 346
BssT1I	CCWWGG	1 cut(s)	55
Bst4CI	ACNGT	1 cut(s)	367
BstC8I	GCNNGC	2 cut(s)	154, 304
BstDEI	CTNAG	1 cut(s)	101
BstFNI	CGCG	4 cut(s)	6, 26, 150, 300
BstHHI	GCGC	7 cut(s)	6, 26, 128, 152, 169, 302, 319
BstKTI	GATC	5 cut(s)	43, 75, 94, 200, 349
BstMBI	GATC	5 cut(s)	40, 72, 91, 197, 346
BstMCI	CGRYCG	1 cut(s)	43
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 156
BstUI	CGCG	4 cut(s)	6, 26, 150, 300
BstV2I	GAAGAC	2 cut(s)	189, 339
BstX2I	RGATCY	1 cut(s)	197
BstYI	RGATCY	1 cut(s)	197
BtsI	GCAGTG	1 cut(s)	225
BtsIMutI	CAGTG	1 cut(s)	225
BveI	ACCTGC	1 cut(s)	131
Cac8I	GCNNGC	2 cut(s)	154, 304
CfoI	GCGC	7 cut(s)	6, 26, 128, 152, 169, 302, 319
Cfr10I	RCCGGY	2 cut(s)	152, 302
CviJI	RGCY	5 cut(s)	17, 54, 105, 204, 357
CviKI_1	RGCY	5 cut(s)	17, 54, 105, 204, 357
DdeI	CTNAG	1 cut(s)	101
DpnI	GATC	5 cut(s)	42, 74, 93, 199, 348
DpnII	GATC	5 cut(s)	40, 72, 91, 197, 346
Eco130I	CCWWGG	1 cut(s)	55
EcoRI	GAATTC	1 cut(s)	370
EcoT14I	CCWWGG	1 cut(s)	55
ErhI	CCWWGG	1 cut(s)	55
Fnu4HI	GCNGC	1 cut(s)	157
Fsp4HI	GCNGC	1 cut(s)	157
FspBI	CTAG	2 cut(s)	56, 201
GlaI	GCGC	7 cut(s)	5, 25, 127, 151, 168, 301, 318
GluI	GCNGC	1 cut(s)	157
GsuI	CTGGAG	1 cut(s)	225
HapII	CCGG	4 cut(s)	113, 153, 263, 303
HhaI	GCGC	7 cut(s)	6, 26, 128, 152, 169, 302, 319
Hin6I	GCGC	7 cut(s)	4, 24, 126, 150, 167, 300, 317
HinP1I	GCGC	7 cut(s)	4, 24, 126, 150, 167, 300, 317
HinfI	GANTC	8 cut(s)	109, 116, 134, 145, 208, 259, 266, 295
HpaII	CCGG	4 cut(s)	113, 153, 263, 303
HphI	GGTGA	4 cut(s)	40, 61, 163, 313
Hpy188I	TCNGA	8 cut(s)	77, 96, 133, 144, 215, 294, 351, 376
Hpy188III	TCNNGA	7 cut(s)	44, 70, 113, 179, 263, 329, 361
Hpy99I	CGWCG	7 cut(s)	164, 191, 197, 311, 314, 341, 347
HpyAV	CCTTC	1 cut(s)	283
HpyCH4III	ACNGT	1 cut(s)	367
HpyCH4IV	ACGT	1 cut(s)	381
HpyCH4V	TGCA	1 cut(s)	230
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 156
HpyF3I	CTNAG	1 cut(s)	101
HpySE526I	ACGT	1 cut(s)	381
HspAI	GCGC	7 cut(s)	4, 24, 126, 150, 167, 300, 317
Kpn2I	TCCGGA	2 cut(s)	112, 262
KroI	GCCGGC	2 cut(s)	152, 302
KroNI	GCCGGC	2 cut(s)	154, 304
Kzo9I	GATC	5 cut(s)	40, 72, 91, 197, 346
LmnI	GCTCC	1 cut(s)	36
LpnPI	CCDG	6 cut(s)	126, 136, 166, 255, 276, 316
LweI	GCATC	2 cut(s)	154, 304
MaeI	CTAG	2 cut(s)	56, 201
MaeII	ACGT	1 cut(s)	381
MaeIII	GTNAC	1 cut(s)	361
MalI	GATC	5 cut(s)	42, 74, 93, 199, 348
MboI	GATC	5 cut(s)	40, 72, 91, 197, 346
MboII	GAAGA	3 cut(s)	22, 194, 344
MflI	RGATCY	1 cut(s)	197
MluCI	AATT	3 cut(s)	79, 254, 370
MlyI	GAGTC	1 cut(s)	128
MnlI	CCTC	5 cut(s)	24, 27, 40, 139, 289
MreI	CGCCGGCG	2 cut(s)	152, 302
MroI	TCCGGA	2 cut(s)	112, 262
MroNI	GCCGGC	2 cut(s)	152, 302
MseI	TTAA	1 cut(s)	384
MspI	CCGG	4 cut(s)	113, 153, 263, 303
MvnI	CGCG	4 cut(s)	6, 26, 150, 300
MwoI	GCNNNNNNNGC	2 cut(s)	23, 156
NaeI	GCCGGC	2 cut(s)	154, 304
NdeII	GATC	5 cut(s)	40, 72, 91, 197, 346
NgoMIV	GCCGGC	2 cut(s)	152, 302
NmuCI	GTSAC	1 cut(s)	361
PcsI	WCGNNNNNNNCGW	1 cut(s)	342
PdiI	GCCGGC	2 cut(s)	154, 304
PfeI	GAWTC	7 cut(s)	109, 116, 145, 208, 259, 266, 295
PkrI	GCNGC	1 cut(s)	158
Ple19I	CGATCG	1 cut(s)	43
PleI	GAGTC	1 cut(s)	128
PpsI	GAGTC	1 cut(s)	128
Psp1406I	AACGTT	1 cut(s)	381
PsuI	RGATCY	1 cut(s)	197
PvuI	CGATCG	1 cut(s)	43
SaqAI	TTAA	1 cut(s)	384
SatI	GCNGC	1 cut(s)	157
Sau3AI	GATC	5 cut(s)	40, 72, 91, 197, 346
SchI	GAGTC	1 cut(s)	128
SetI	ASST	6 cut(s)	51, 107, 125, 206, 275, 384
SfaNI	GCATC	2 cut(s)	154, 304
SgrAI	CRCCGGYG	2 cut(s)	152, 302
Sse9I	AATT	3 cut(s)	79, 254, 370
SsiI	CCGC	2 cut(s)	26, 156
SspMI	CTAG	2 cut(s)	56, 201
StyI	CCWWGG	1 cut(s)	55
TaaI	ACNGT	1 cut(s)	367
TaiI	ACGT	1 cut(s)	384
TaqI	TCGA	3 cut(s)	69, 119, 269
TasI	AATT	3 cut(s)	79, 254, 370
TauI	GCSGC	1 cut(s)	159
TfiI	GAWTC	7 cut(s)	109, 116, 145, 208, 259, 266, 295
Tru1I	TTAA	1 cut(s)	384
Tru9I	TTAA	1 cut(s)	384
TscAI	CASTG	1 cut(s)	232
TseFI	GTSAC	1 cut(s)	361
Tsp45I	GTSAC	1 cut(s)	361
TspGWI	ACGGA	1 cut(s)	210
TspRI	CASTG	1 cut(s)	232
XapI	RAATTY	2 cut(s)	79, 370
XmaJI	CCTAGG	1 cut(s)	55
XspI	CTAG	2 cut(s)	56, 201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.