Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0005205

Physical Location & Seq

Genomic Coordinates Forward (+)

54253428 .. 54261227

Gene Structure 7800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG389200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGCGTGCAATACTGAACAATATATGGAAACTAAAGTTCTCAGCGCCACTCGCACTACTGCTTTTCGACCTCAAAAACTCAAATGCTTTGCCGAATCAGCAGACCGTGGAGTACCCGAGCTTCAAGCTCGTAATCGTTGGTGATGGTGGAACAGGTAAATTCCAGCTGAGGAGATACCGATTCATGAAAGGAGAATGCGAGCTCTGCGCTTATCCAAGCATGCGAAACCAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008134 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033554 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 ko03050 ko05166 ko05169 map03008 map03013 map03050 map05166 map05169

Pfam Domains

Protein Families

AAA Ras

Protein Analysis

78

Amino Acids

8.95

Weight (kDa)

9.76

Isoelectric Point (pI)

31.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005205)

Species	Orthologous Gene IDs
malus_domestica	MD07G1185800.v1.1
rosa_chinensis	RchiOBHm_Chr1g0327941
rosa_laevigata	RLG00000018282
rosa_multiflora	Rmu_co8368975.1_g000001 Rmu_sc0002900.1_g000003 Rmu_sc0003410.1_g000003 Rmu_sc0009365.1_g000011 Rmu_sc0011124.1_g000001 Rmu_sc0011806.1_g000003 Rmu_sc0014304.1_g000001 Rmu_sc0026800.1_g000001 Rmu_ssc0000026.1_g000005
rosa_roxburghii	Rroxscaffold_1G00047290 Rroxscaffold_5G00349170 Rroxscaffold_7G00169450
rosa_rugosa	Rorug02G0307300
rosa_samantha	Rh1CG170200 Rh2BG294200 Rh2BG331900 Rh2CG478300 Rh2CG514100 Rh3DG332200 Rh4BG389200 Rh4CG173800 Rh5CG378500 Rh7AG370300 Rh7AG371300 Rh7BG367300 Rh7CG389100 Rh7CG389900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	158
AfaI	GTAC	1 cut(s)	113
AgsI	TTSAA	1 cut(s)	124
AluBI	AGCT	4 cut(s)	120, 127, 166, 202
AluI	AGCT	4 cut(s)	120, 127, 166, 202
Alw21I	GWGCWC	1 cut(s)	204
Ama87I	CYCGRG	1 cut(s)	115
ApoI	RAATTY	1 cut(s)	158
AspLEI	GCGC	2 cut(s)	46, 209
AsuHPI	GGTGA	1 cut(s)	152
AvaI	CYCGRG	1 cut(s)	115
BanII	GRGCYC	1 cut(s)	204
BarI	GAAGNNNNNNTAC	2 cut(s)	104, 136
Bbv12I	GWGCWC	1 cut(s)	204
BbvCI	CCTCAGC	1 cut(s)	167
BccI	CCATC	1 cut(s)	137
BfoI	RGCGCY	1 cut(s)	47
BmeT110I	CYCGRG	1 cut(s)	115
Bpu10I	CCTNAGC	1 cut(s)	167
BsaJI	CCNNGG	1 cut(s)	105
BseDI	CCNNGG	1 cut(s)	105
BseMII	CTCAG	2 cut(s)	54, 158
BseRI	GAGGAG	1 cut(s)	184
BsiHKAI	GWGCWC	1 cut(s)	204
BsiHKCI	CYCGRG	1 cut(s)	115
BsmI	GAATGC	1 cut(s)	200
BsoBI	CYCGRG	1 cut(s)	115
Bsp1286I	GDGCHC	1 cut(s)	204
BspCNI	CTCAG	2 cut(s)	53, 159
BspHI	TCATGA	1 cut(s)	183
BssECI	CCNNGG	1 cut(s)	105
Bst4CI	ACNGT	1 cut(s)	106
BstC8I	GCNNGC	3 cut(s)	6, 200, 221
BstDEI	CTNAG	2 cut(s)	40, 167
BstDSI	CCRYGG	1 cut(s)	105
BstH2I	RGCGCY	1 cut(s)	47
BstHHI	GCGC	2 cut(s)	46, 209
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 97, 204
BstNSI	RCATGY	1 cut(s)	223
BtgI	CCRYGG	1 cut(s)	105
Cac8I	GCNNGC	3 cut(s)	6, 200, 221
CciI	TCATGA	1 cut(s)	183
CfoI	GCGC	2 cut(s)	46, 209
Csp6I	GTAC	1 cut(s)	112
CviAII	CATG	2 cut(s)	184, 220
CviJI	RGCY	4 cut(s)	120, 127, 166, 202
CviKI_1	RGCY	4 cut(s)	120, 127, 166, 202
CviQI	GTAC	1 cut(s)	112
DdeI	CTNAG	2 cut(s)	40, 167
Ecl136II	GAGCTC	1 cut(s)	202
Eco24I	GRGCYC	1 cut(s)	204
Eco53kI	GAGCTC	1 cut(s)	202
Eco88I	CYCGRG	1 cut(s)	115
EcoICRI	GAGCTC	1 cut(s)	202
EcoT38I	GRGCYC	1 cut(s)	204
FaeI	CATG	2 cut(s)	187, 223
FaiI	YATR	4 cut(s)	23, 25, 185, 221
FatI	CATG	2 cut(s)	183, 219
FriOI	GRGCYC	1 cut(s)	204
GlaI	GCGC	2 cut(s)	45, 208
HaeII	RGCGCY	1 cut(s)	47
HhaI	GCGC	2 cut(s)	46, 209
Hin1II	CATG	2 cut(s)	187, 223
Hin6I	GCGC	2 cut(s)	44, 207
HinP1I	GCGC	2 cut(s)	44, 207
HinfI	GANTC	2 cut(s)	94, 180
HphI	GGTGA	1 cut(s)	152
Hpy188III	TCNNGA	1 cut(s)	184
HpyCH4III	ACNGT	1 cut(s)	106
HpyCH4V	TGCA	1 cut(s)	8
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 97, 204
HpyF3I	CTNAG	2 cut(s)	40, 167
Hsp92II	CATG	2 cut(s)	187, 223
HspAI	GCGC	2 cut(s)	44, 207
LpnPI	CCDG	2 cut(s)	138, 176
MhlI	GDGCHC	1 cut(s)	204
MluCI	AATT	1 cut(s)	158
MnlI	CCTC	2 cut(s)	80, 162
MspA1I	CMGCKG	1 cut(s)	166
Mva1269I	GAATGC	1 cut(s)	200
MwoI	GCNNNNNNNGC	3 cut(s)	50, 97, 204
NlaIII	CATG	2 cut(s)	187, 223
NspI	RCATGY	1 cut(s)	223
PaeI	GCATGC	1 cut(s)	223
PagI	TCATGA	1 cut(s)	183
PctI	GAATGC	1 cut(s)	200
PfeI	GAWTC	2 cut(s)	94, 180
Psp124BI	GAGCTC	1 cut(s)	204
PvuII	CAGCTG	1 cut(s)	166
RsaI	GTAC	1 cut(s)	113
RsaNI	GTAC	1 cut(s)	112
SacI	GAGCTC	1 cut(s)	204
SduI	GDGCHC	1 cut(s)	204
SetI	ASST	6 cut(s)	72, 122, 129, 157, 168, 204
SphI	GCATGC	1 cut(s)	223
Sse9I	AATT	1 cut(s)	158
SstI	GAGCTC	1 cut(s)	204
TaaI	ACNGT	1 cut(s)	106
TaqI	TCGA	1 cut(s)	66
TasI	AATT	1 cut(s)	158
TfiI	GAWTC	2 cut(s)	94, 180
TspDTI	ATGAA	2 cut(s)	172, 200
XapI	RAATTY	1 cut(s)	158
XceI	RCATGY	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.