MD12G1097000.v1.1
MYB Family

Alcohol dehydrogenase transcription factor Myb/SANT-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Forward (+)
15271578 .. 15272664
1087 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1097000.v1.1.491

Sequence Viewer

Length: 324 bp
ATGAGCAGCGGCGGCGTTTCGGCGAATCACTGGCCTTGGTTCCAGAAGATGGAGCAGATCGTCGGCAATTCAGTGGGGGCAAAGGCCACCTCCGATAACGATAAAGGCGTTTCTTCTTTGGATAACACACCGCGGCAATCAAAGAGCTTTGGATATGGAACGACAGTGTCGAGTCCTGTAGGTAAGATGAACAACAAGGTGAAATCAGCTCCGAGTATCAAATGGCGAAGAGTGGTCTTCAAAATCAGTAGTGCTGCTCTTGCTGGCACTGCTCCGAACAACGTCGACTCGATGGTTCTATTCTATATATGCAAACCCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

108

Amino Acids

11.45

Weight (kDa)

10.01

Isoelectric Point (pI)

41.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 49
AccI GTMKAC 1 cut(s) 285
AccII CGCG 1 cut(s) 133
AciI CCGC 4 cut(s) 9, 12, 131, 133
AfiI CCNNNNNNNGG 1 cut(s) 49
AgsI TTSAA 1 cut(s) 241
AluBI AGCT 2 cut(s) 147, 209
AluI AGCT 2 cut(s) 147, 209
AoxI GGCC 2 cut(s) 32, 84
ApeKI GCWGC 2 cut(s) 6, 254
AsuHPI GGTGA 1 cut(s) 211
BbsI GAAGAC 1 cut(s) 229
BbvI GCAGC 2 cut(s) 18, 241
BccI CCATC 2 cut(s) 43, 286
BfmI CTRYAG 1 cut(s) 177
BisI GCNGC 5 cut(s) 7, 10, 13, 134, 255
BlsI GCNGC 5 cut(s) 8, 11, 14, 135, 256
BmiI GGNNCC 1 cut(s) 41
BpiI GAAGAC 1 cut(s) 229
BsaJI CCNNGG 2 cut(s) 35, 131
Bsc4I CCNNNNNNNGG 1 cut(s) 49
Bse1I ACTGG 1 cut(s) 35
BseDI CCNNGG 2 cut(s) 35, 131
BseLI CCNNNNNNNGG 1 cut(s) 49
BseNI ACTGG 1 cut(s) 35
BseXI GCAGC 2 cut(s) 18, 241
Bsh1236I CGCG 1 cut(s) 133
BshFI GGCC 2 cut(s) 34, 86
BslI CCNNNNNNNGG 1 cut(s) 49
BsnI GGCC 2 cut(s) 34, 86
Bsp143I GATC 1 cut(s) 57
BspACI CCGC 4 cut(s) 9, 12, 131, 133
BspANI GGCC 2 cut(s) 34, 86
BspFNI CGCG 1 cut(s) 133
BspLI GGNNCC 1 cut(s) 41
BsrI ACTGG 1 cut(s) 35
BssECI CCNNGG 2 cut(s) 35, 131
BssMI GATC 1 cut(s) 57
BssT1I CCWWGG 1 cut(s) 35
Bst4CI ACNGT 1 cut(s) 166
Bst6I CTCTTC 1 cut(s) 223
BstC8I GCNNGC 1 cut(s) 265
BstDSI CCRYGG 1 cut(s) 131
BstFNI CGCG 1 cut(s) 133
BstKTI GATC 1 cut(s) 60
BstMBI GATC 1 cut(s) 57
BstMWI GCNNNNNNNGC 3 cut(s) 12, 260, 269
BstSFI CTRYAG 1 cut(s) 177
BstUI CGCG 1 cut(s) 133
BstV1I GCAGC 2 cut(s) 18, 241
BstV2I GAAGAC 1 cut(s) 229
BsuRI GGCC 2 cut(s) 34, 86
BtgI CCRYGG 1 cut(s) 131
BtsI GCAGTG 1 cut(s) 267
BtsIMutI CAGTG 4 cut(s) 28, 78, 171, 267
Cac8I GCNNGC 1 cut(s) 265
Cfr42I CCGCGG 1 cut(s) 134
CviJI RGCY 4 cut(s) 34, 86, 147, 209
CviKI_1 RGCY 4 cut(s) 34, 86, 147, 209
DpnI GATC 1 cut(s) 59
DpnII GATC 1 cut(s) 57
Eam1104I CTCTTC 1 cut(s) 223
EarI CTCTTC 1 cut(s) 223
Eco130I CCWWGG 1 cut(s) 35
EcoT14I CCWWGG 1 cut(s) 35
ErhI CCWWGG 1 cut(s) 35
FaiI YATR 4 cut(s) 156, 306, 308, 310
FblI GTMKAC 1 cut(s) 285
Fnu4HI GCNGC 5 cut(s) 7, 10, 13, 134, 255
Fsp4HI GCNGC 5 cut(s) 7, 10, 13, 134, 255
GluI GCNGC 5 cut(s) 7, 10, 13, 134, 255
HaeIII GGCC 2 cut(s) 34, 86
HincII GTYRAC 1 cut(s) 286
HindII GTYRAC 1 cut(s) 286
HinfI GANTC 3 cut(s) 25, 172, 287
HphI GGTGA 1 cut(s) 211
Hpy166II GTNNAC 1 cut(s) 286
Hpy188I TCNGA 3 cut(s) 94, 213, 276
Hpy188III TCNNGA 1 cut(s) 43
Hpy8I GTNNAC 1 cut(s) 286
Hpy99I CGWCG 2 cut(s) 65, 287
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4IV ACGT 1 cut(s) 282
HpyCH4V TGCA 1 cut(s) 312
HpyF10VI GCNNNNNNNGC 3 cut(s) 12, 260, 269
HpySE526I ACGT 1 cut(s) 282
KspI CCGCGG 1 cut(s) 134
Kzo9I GATC 1 cut(s) 57
LmnI GCTCC 3 cut(s) 52, 214, 277
LpnPI CCDG 4 cut(s) 16, 56, 189, 249
Lsp1109I GCAGC 2 cut(s) 18, 241
MaeII ACGT 1 cut(s) 282
MalI GATC 1 cut(s) 59
MboI GATC 1 cut(s) 57
MboII GAAGA 4 cut(s) 58, 105, 229, 240
MfeI CAATTG 1 cut(s) 319
MluCI AATT 2 cut(s) 67, 319
MlyI GAGTC 2 cut(s) 181, 281
MnlI CCTC 1 cut(s) 100
MspA1I CMGCKG 2 cut(s) 9, 133
MunI CAATTG 1 cut(s) 319
MvnI CGCG 1 cut(s) 133
MwoI GCNNNNNNNGC 3 cut(s) 12, 260, 269
NdeII GATC 1 cut(s) 57
NlaIV GGNNCC 1 cut(s) 41
PcsI WCGNNNNNNNCGW 2 cut(s) 105, 167
PfeI GAWTC 1 cut(s) 25
PflFI GACNNNGTC 1 cut(s) 166
PflMI CCANNNNNTGG 1 cut(s) 49
PkrI GCNGC 5 cut(s) 8, 11, 14, 135, 256
PleI GAGTC 2 cut(s) 180, 281
PpsI GAGTC 2 cut(s) 180, 281
PspN4I GGNNCC 1 cut(s) 41
PsyI GACNNNGTC 1 cut(s) 166
SacII CCGCGG 1 cut(s) 134
SalI GTCGAC 1 cut(s) 284
SatI GCNGC 5 cut(s) 7, 10, 13, 134, 255
Sau3AI GATC 1 cut(s) 57
SchI GAGTC 2 cut(s) 181, 281
SetI ASST 6 cut(s) 92, 149, 184, 201, 211, 285
SfcI CTRYAG 1 cut(s) 177
Sfr303I CCGCGG 1 cut(s) 134
SgrBI CCGCGG 1 cut(s) 134
Sse9I AATT 2 cut(s) 67, 319
SsiI CCGC 4 cut(s) 9, 12, 131, 133
StyI CCWWGG 1 cut(s) 35
TaaI ACNGT 1 cut(s) 166
TaiI ACGT 1 cut(s) 285
TaqI TCGA 3 cut(s) 170, 285, 290
TasI AATT 2 cut(s) 67, 319
TauI GCSGC 3 cut(s) 12, 15, 136
TfiI GAWTC 1 cut(s) 25
TscAI CASTG 4 cut(s) 35, 78, 171, 274
TseI GCWGC 2 cut(s) 6, 254
TspDTI ATGAA 1 cut(s) 203
TspRI CASTG 4 cut(s) 35, 78, 171, 274
Tth111I GACNNNGTC 1 cut(s) 166
Van91I CCANNNNNTGG 1 cut(s) 49
XmiI GTMKAC 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.