Rh4BG099200
MYB Family

Alcohol dehydrogenase transcription factor Myb/SANT-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Forward (+)
16947482 .. 16948143
662 bp
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UTR
Exon/CDS
Intron
Rh4BG099200.1

Sequence Viewer

Length: 372 bp
ATGACCAATTCTGGAAATTCGCCGAGTCATTGGTCTTGGTTCAAGATAATGGAGCAGATCGTCGGCAATTTGCTTCCGGCGAAGGCCACCTCTGATGATGACAGAGGCATTACTTCCTCCCTTGCCACGCCTCAGAAACCAAAGAGAAATGCAAGTGCAATTACTAGTCCTGTAACTCAGATAAATAAGCAGCCGAAAATTAGTCTTAAATGGCGAAGAGTGGCGTTCAAAGTCAGTGGTGCTGCTCTAGCTGGCACTGCTGCTAACAGCATTGACCCAAAGATAACAATGCTGATTGCGAGAGAAGTTGCAATGGCCTGCTGCAGTGGGGTGGAGGTGGAAATTGTTGTTGGCGGTCGCAACTTTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

123

Amino Acids

13.1

Weight (kDa)

9.93

Isoelectric Point (pI)

31.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 354
AcsI RAATTY 1 cut(s) 16
AgsI TTSAA 2 cut(s) 43, 229
AhlI ACTAGT 1 cut(s) 164
AjuI GAANNNNNNNTTGG 2 cut(s) 333, 365
AluBI AGCT 1 cut(s) 251
AluI AGCT 1 cut(s) 251
AoxI GGCC 2 cut(s) 84, 315
ApeKI GCWGC 4 cut(s) 190, 242, 260, 321
ApoI RAATTY 1 cut(s) 16
BbvI GCAGC 4 cut(s) 202, 229, 247, 308
BcuI ACTAGT 1 cut(s) 164
BfaI CTAG 2 cut(s) 165, 248
BfmI CTRYAG 1 cut(s) 322
BisI GCNGC 4 cut(s) 191, 243, 261, 322
BlsI GCNGC 4 cut(s) 192, 244, 262, 323
Bse3DI GCAATG 1 cut(s) 318
BseMI GCAATG 1 cut(s) 318
BseMII CTCAG 2 cut(s) 146, 191
BseXI GCAGC 4 cut(s) 202, 229, 247, 308
Bsh1285I CGRYCG 1 cut(s) 358
BshFI GGCC 2 cut(s) 86, 317
BsiEI CGRYCG 1 cut(s) 358
BsiSI CCGG 1 cut(s) 77
BsnI GGCC 2 cut(s) 86, 317
Bsp143I GATC 1 cut(s) 57
BspACI CCGC 1 cut(s) 354
BspANI GGCC 2 cut(s) 86, 317
BspCNI CTCAG 2 cut(s) 145, 190
BspMAI CTGCAG 1 cut(s) 326
BsrDI GCAATG 1 cut(s) 318
BssMI GATC 1 cut(s) 57
Bst6I CTCTTC 1 cut(s) 211
BstC8I GCNNGC 2 cut(s) 253, 319
BstDEI CTNAG 2 cut(s) 132, 177
BstKTI GATC 1 cut(s) 60
BstMBI GATC 1 cut(s) 57
BstMCI CGRYCG 1 cut(s) 358
BstMWI GCNNNNNNNGC 3 cut(s) 248, 257, 366
BstSFI CTRYAG 1 cut(s) 322
BstV1I GCAGC 4 cut(s) 202, 229, 247, 308
BsuRI GGCC 2 cut(s) 86, 317
BtsI GCAGTG 2 cut(s) 255, 331
BtsIMutI CAGTG 3 cut(s) 241, 255, 331
Cac8I GCNNGC 2 cut(s) 253, 319
CspCI CAANNNNNGTGG 2 cut(s) 217, 252
CviJI RGCY 5 cut(s) 86, 193, 251, 317, 369
CviKI_1 RGCY 5 cut(s) 86, 193, 251, 317, 369
DdeI CTNAG 2 cut(s) 132, 177
DpnI GATC 1 cut(s) 59
DpnII GATC 1 cut(s) 57
Eam1104I CTCTTC 1 cut(s) 211
EarI CTCTTC 1 cut(s) 211
Fnu4HI GCNGC 4 cut(s) 191, 243, 261, 322
Fsp4HI GCNGC 4 cut(s) 191, 243, 261, 322
FspBI CTAG 2 cut(s) 165, 248
GluI GCNGC 4 cut(s) 191, 243, 261, 322
HaeIII GGCC 2 cut(s) 86, 317
HapII CCGG 1 cut(s) 77
HinfI GANTC 1 cut(s) 25
HpaII CCGG 1 cut(s) 77
Hpy188I TCNGA 3 cut(s) 94, 135, 180
Hpy188III TCNNGA 2 cut(s) 12, 43
Hpy99I CGWCG 1 cut(s) 65
HpyAV CCTTC 1 cut(s) 76
HpyCH4V TGCA 4 cut(s) 152, 158, 311, 324
HpyF10VI GCNNNNNNNGC 3 cut(s) 248, 257, 366
HpyF3I CTNAG 2 cut(s) 132, 177
Kzo9I GATC 1 cut(s) 57
LmnI GCTCC 1 cut(s) 52
LpnPI CCDG 4 cut(s) 90, 183, 237, 331
Lsp1109I GCAGC 4 cut(s) 202, 229, 247, 308
MaeI CTAG 2 cut(s) 165, 248
MaeIII GTNAC 1 cut(s) 172
MalI GATC 1 cut(s) 59
MboI GATC 1 cut(s) 57
MboII GAAGA 1 cut(s) 228
MluCI AATT 6 cut(s) 7, 16, 67, 159, 198, 342
MlyI GAGTC 1 cut(s) 34
MnlI CCTC 5 cut(s) 98, 100, 127, 141, 328
MseI TTAA 1 cut(s) 207
MspI CCGG 1 cut(s) 77
MwoI GCNNNNNNNGC 3 cut(s) 248, 257, 366
NdeII GATC 1 cut(s) 57
NmeAIII GCCGAG 1 cut(s) 48
PkrI GCNGC 4 cut(s) 192, 244, 262, 323
PleI GAGTC 1 cut(s) 33
PpsI GAGTC 1 cut(s) 33
PstI CTGCAG 1 cut(s) 326
SaqAI TTAA 1 cut(s) 207
SatI GCNGC 4 cut(s) 191, 243, 261, 322
Sau3AI GATC 1 cut(s) 57
SchI GAGTC 1 cut(s) 34
SetI ASST 3 cut(s) 92, 253, 339
SfcI CTRYAG 1 cut(s) 322
SpeI ACTAGT 1 cut(s) 164
Sse9I AATT 6 cut(s) 7, 16, 67, 159, 198, 342
SsiI CCGC 1 cut(s) 354
SspMI CTAG 2 cut(s) 165, 248
TasI AATT 6 cut(s) 7, 16, 67, 159, 198, 342
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TscAI CASTG 3 cut(s) 241, 262, 331
TseI GCWGC 4 cut(s) 190, 242, 260, 321
TspRI CASTG 3 cut(s) 241, 262, 331
XapI RAATTY 1 cut(s) 16
XspI CTAG 2 cut(s) 165, 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.