Rmu_ssc0000126.1_g000038
MYB Family

Alcohol dehydrogenase transcription factor Myb/SANT-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000126.1
OG0001994
Physical Location & Seq
Reverse (-)
158161 .. 159663
1503 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000126.1_g000038.1.cds

Sequence Viewer

Length: 432 bp
atgcctgccctgttgggtaagaggagtcatcttgatacccctctctcccatagccaaaagggaaaggacttggttcttttacagattgaatctattagctactcgagctgcacggatcagaacgatgtcgcgtcgaagataaaggaccagtccgatgagctcaacgacggagccggcggcggtggcgaaggaggaggaggaggaggttcatacaccatcatcaagagatcaaaatcctcggtcgtggcggtcggagagtactggaaggatcgcgaggagtggagcgacggcgcaatcgcttgccttctcaatgcgtacatggacaagttcacgcaactgaattggggaaatctgagacgccgggattgggaggaggtggccttgaacgtgagccagatgtccgaggcaaaccaagagcgtcgagcagtataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AA_kinase Myb_DNA-bind_4

Protein Analysis

143

Amino Acids

15.65

Weight (kDa)

5.19

Isoelectric Point (pI)

68.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 131, 273
AciI CCGC 3 cut(s) 177, 180, 248
AclWI GGATC 2 cut(s) 123, 276
AcyI GRCGYC 1 cut(s) 358
AfaI GTAC 2 cut(s) 260, 317
AfiI CCNNNNNNNGG 1 cut(s) 367
AgsI TTSAA 2 cut(s) 89, 385
AluBI AGCT 3 cut(s) 99, 108, 160
AluI AGCT 3 cut(s) 99, 108, 160
Alw21I GWGCWC 1 cut(s) 162
Alw26I GTCTC 1 cut(s) 349
AlwI GGATC 2 cut(s) 123, 276
Ama87I CYCGRG 1 cut(s) 103
AoxI GGCC 1 cut(s) 378
ApeKI GCWGC 1 cut(s) 108
AspLEI GCGC 1 cut(s) 293
AspS9I GGNCC 1 cut(s) 145
AsuC2I CCSGG 1 cut(s) 362
AvaI CYCGRG 1 cut(s) 103
AvaII GGWCC 1 cut(s) 145
BanII GRGCYC 1 cut(s) 162
Bbv12I GWGCWC 1 cut(s) 162
BbvI GCAGC 1 cut(s) 95
BccI CCATC 1 cut(s) 224
BceAI ACGGC 1 cut(s) 304
BcnI CCSGG 1 cut(s) 362
BcoDI GTCTC 1 cut(s) 349
BisI GCNGC 2 cut(s) 109, 178
BlsI GCNGC 2 cut(s) 110, 179
BmcAI AGTACT 1 cut(s) 260
Bme1390I CCNGG 1 cut(s) 362
Bme18I GGWCC 1 cut(s) 145
BmeT110I CYCGRG 1 cut(s) 103
BmgT120I GGNCC 1 cut(s) 145
BmiI GGNNCC 1 cut(s) 172
BmrFI CCNGG 1 cut(s) 362
BpuMI CCSGG 1 cut(s) 362
BsaBI GATNNNNATC 1 cut(s) 232
BsaHI GRCGYC 1 cut(s) 358
BsaJI CCNNGG 2 cut(s) 237, 402
Bsc4I CCNNNNNNNGG 1 cut(s) 367
Bse118I RCCGGY 1 cut(s) 173
Bse1I ACTGG 2 cut(s) 148, 266
Bse8I GATNNNNATC 1 cut(s) 232
BseDI CCNNGG 2 cut(s) 237, 402
BseJI GATNNNNATC 1 cut(s) 232
BseLI CCNNNNNNNGG 1 cut(s) 367
BseMII CTCAG 1 cut(s) 344
BseNI ACTGG 2 cut(s) 148, 266
BseRI GAGGAG 7 cut(s) 37, 207, 210, 213, 216, 290, 386
BseXI GCAGC 1 cut(s) 95
BsgI GTGCAG 1 cut(s) 94
Bsh1236I CGCG 2 cut(s) 131, 273
Bsh1285I CGRYCG 2 cut(s) 243, 252
BshFI GGCC 1 cut(s) 380
BsiEI CGRYCG 2 cut(s) 243, 252
BsiHKAI GWGCWC 1 cut(s) 162
BsiHKCI CYCGRG 1 cut(s) 103
BsiSI CCGG 2 cut(s) 174, 361
BslI CCNNNNNNNGG 1 cut(s) 367
BsmAI GTCTC 1 cut(s) 349
BsmBI CGTCTC 1 cut(s) 349
BsnI GGCC 1 cut(s) 380
BsoBI CYCGRG 1 cut(s) 103
Bsp1286I GDGCHC 1 cut(s) 162
Bsp143I GATC 3 cut(s) 115, 227, 268
Bsp68I TCGCGA 1 cut(s) 273
BspACI CCGC 3 cut(s) 177, 180, 248
BspANI GGCC 1 cut(s) 380
BspCNI CTCAG 1 cut(s) 345
BspFNI CGCG 2 cut(s) 131, 273
BspLI GGNNCC 1 cut(s) 172
BspPI GGATC 2 cut(s) 123, 276
BsrFI RCCGGY 1 cut(s) 173
BsrI ACTGG 2 cut(s) 148, 266
BssAI RCCGGY 1 cut(s) 173
BssECI CCNNGG 2 cut(s) 237, 402
BssMI GATC 3 cut(s) 115, 227, 268
BssNI GRCGYC 1 cut(s) 358
BstACI GRCGYC 1 cut(s) 358
BstC8I GCNNGC 3 cut(s) 6, 175, 301
BstDEI CTNAG 1 cut(s) 353
BstFNI CGCG 2 cut(s) 131, 273
BstHHI GCGC 1 cut(s) 293
BstKTI GATC 3 cut(s) 118, 230, 271
BstMAI GTCTC 1 cut(s) 349
BstMBI GATC 3 cut(s) 115, 227, 268
BstMCI CGRYCG 2 cut(s) 243, 252
BstMWI GCNNNNNNNGC 2 cut(s) 105, 183
BstSCI CCNGG 1 cut(s) 360
BstUI CGCG 2 cut(s) 131, 273
BstV1I GCAGC 1 cut(s) 95
BsuRI GGCC 1 cut(s) 380
BtuMI TCGCGA 1 cut(s) 273
Cac8I GCNNGC 3 cut(s) 6, 175, 301
CfoI GCGC 1 cut(s) 293
Cfr10I RCCGGY 1 cut(s) 173
Cfr13I GGNCC 1 cut(s) 145
CseI GACGC 3 cut(s) 120, 366, 407
Csp6I GTAC 2 cut(s) 259, 316
CviAII CATG 1 cut(s) 319
CviJI RGCY 7 cut(s) 54, 99, 108, 160, 173, 380, 393
CviKI_1 RGCY 7 cut(s) 54, 99, 108, 160, 173, 380, 393
CviQI GTAC 2 cut(s) 259, 316
DdeI CTNAG 1 cut(s) 353
DpnI GATC 3 cut(s) 117, 229, 270
DpnII GATC 3 cut(s) 115, 227, 268
Ecl136II GAGCTC 1 cut(s) 160
Eco24I GRGCYC 1 cut(s) 162
Eco47I GGWCC 1 cut(s) 145
Eco53kI GAGCTC 1 cut(s) 160
Eco88I CYCGRG 1 cut(s) 103
EcoICRI GAGCTC 1 cut(s) 160
EcoT38I GRGCYC 1 cut(s) 162
Esp3I CGTCTC 1 cut(s) 349
FaeI CATG 1 cut(s) 322
FaiI YATR 4 cut(s) 51, 211, 320, 430
FatI CATG 1 cut(s) 318
Fnu4HI GCNGC 2 cut(s) 109, 178
FriOI GRGCYC 1 cut(s) 162
Fsp4HI GCNGC 2 cut(s) 109, 178
GlaI GCGC 1 cut(s) 292
GluI GCNGC 2 cut(s) 109, 178
HaeIII GGCC 1 cut(s) 380
HapII CCGG 2 cut(s) 174, 361
HgaI GACGC 3 cut(s) 120, 366, 407
HhaI GCGC 1 cut(s) 293
Hin1I GRCGYC 1 cut(s) 358
Hin1II CATG 1 cut(s) 322
Hin6I GCGC 1 cut(s) 291
HinP1I GCGC 1 cut(s) 291
HinfI GANTC 2 cut(s) 25, 89
HpaII CCGG 2 cut(s) 174, 361
Hpy166II GTNNAC 1 cut(s) 330
Hpy188I TCNGA 5 cut(s) 120, 154, 254, 354, 403
Hpy188III TCNNGA 3 cut(s) 32, 223, 272
Hpy8I GTNNAC 1 cut(s) 330
Hpy99I CGWCG 4 cut(s) 136, 170, 290, 423
HpyAV CCTTC 3 cut(s) 182, 259, 314
HpyCH4IV ACGT 1 cut(s) 387
HpyCH4V TGCA 1 cut(s) 111
HpyF10VI GCNNNNNNNGC 2 cut(s) 105, 183
HpyF3I CTNAG 1 cut(s) 353
HpySE526I ACGT 1 cut(s) 387
Hsp92I GRCGYC 1 cut(s) 358
Hsp92II CATG 1 cut(s) 322
HspAI GCGC 1 cut(s) 291
KroI GCCGGC 1 cut(s) 173
KroNI GCCGGC 1 cut(s) 175
Kzo9I GATC 3 cut(s) 115, 227, 268
LmnI GCTCC 2 cut(s) 170, 282
LpnPI CCDG 7 cut(s) 18, 23, 161, 187, 247, 374, 407
Lsp1109I GCAGC 1 cut(s) 95
MaeII ACGT 1 cut(s) 387
MalI GATC 3 cut(s) 117, 229, 270
MboI GATC 3 cut(s) 115, 227, 268
MboII GAAGA 1 cut(s) 148
MhlI GDGCHC 1 cut(s) 162
MluCI AATT 1 cut(s) 340
MlyI GAGTC 1 cut(s) 34
MmeI TCCRAC 1 cut(s) 232
MroNI GCCGGC 1 cut(s) 173
MspI CCGG 2 cut(s) 174, 361
MspR9I CCNGG 1 cut(s) 362
MvnI CGCG 2 cut(s) 131, 273
MwoI GCNNNNNNNGC 2 cut(s) 105, 183
NaeI GCCGGC 1 cut(s) 175
NciI CCSGG 1 cut(s) 362
NdeII GATC 3 cut(s) 115, 227, 268
NgoMIV GCCGGC 1 cut(s) 173
NlaIII CATG 1 cut(s) 322
NlaIV GGNNCC 1 cut(s) 172
NruI TCGCGA 1 cut(s) 273
PaeR7I CTCGAG 1 cut(s) 103
PdiI GCCGGC 1 cut(s) 175
PfeI GAWTC 1 cut(s) 89
PkrI GCNGC 2 cut(s) 110, 179
PleI GAGTC 1 cut(s) 33
PpsI GAGTC 1 cut(s) 33
Psp124BI GAGCTC 1 cut(s) 162
PspN4I GGNNCC 1 cut(s) 172
PspPI GGNCC 1 cut(s) 145
PspXI VCTCGAGB 1 cut(s) 103
RruI TCGCGA 1 cut(s) 273
RsaI GTAC 2 cut(s) 260, 317
RsaNI GTAC 2 cut(s) 259, 316
SacI GAGCTC 1 cut(s) 162
SatI GCNGC 2 cut(s) 109, 178
Sau3AI GATC 3 cut(s) 115, 227, 268
Sau96I GGNCC 1 cut(s) 145
ScaI AGTACT 1 cut(s) 260
SchI GAGTC 1 cut(s) 34
ScrFI CCNGG 1 cut(s) 362
SduI GDGCHC 1 cut(s) 162
SetI ASST 6 cut(s) 101, 110, 162, 208, 378, 390
Sfr274I CTCGAG 1 cut(s) 103
SinI GGWCC 1 cut(s) 145
SlaI CTCGAG 1 cut(s) 103
SmlI CTYRAG 1 cut(s) 103
SmoI CTYRAG 1 cut(s) 103
Sse9I AATT 1 cut(s) 340
SsiI CCGC 3 cut(s) 177, 180, 248
SstI GAGCTC 1 cut(s) 162
StyD4I CCNGG 1 cut(s) 360
TaiI ACGT 1 cut(s) 390
TaqI TCGA 3 cut(s) 104, 134, 421
TaqII GACCGA 1 cut(s) 229
TasI AATT 1 cut(s) 340
TatI WGTACW 1 cut(s) 258
TauI GCSGC 1 cut(s) 180
TfiI GAWTC 1 cut(s) 89
TseI GCWGC 1 cut(s) 108
TspDTI ATGAA 1 cut(s) 198
TspGWI ACGGA 2 cut(s) 128, 183
VpaK11BI GGWCC 1 cut(s) 145
XhoI CTCGAG 1 cut(s) 103
ZrmI AGTACT 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.