Rh2DG675400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0001994
Physical Location & Seq
Forward (+)
89668382 .. 89669091
710 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG675400.1

Sequence Viewer

Length: 258 bp
ATGGAGCAGATCGTCGACAATTCGCTTCCGGTGAAGGCCACCTCTGATGATGACAGAGGCATTACTTCCTCCGATAACAATGCTGATTGCGAGAGAAGTTGCAATGGTCTGCCGCAGTGGGGTGGAGGTGGCAATTGTTGTTGGCGGTCGCAACTTTGGCTGATGGGTGTGGCGGATTTAGGGGTTTGGGCTGTGGGGTCAGCGCGGAGGGTTATGGAGATTGCGATGGCGGCGAGTATGACGGCCATGGTGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

9.1

Weight (kDa)

4.39

Isoelectric Point (pI)

46.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 15
AccII CGCG 1 cut(s) 205
AciI CCGC 5 cut(s) 113, 145, 173, 205, 230
AcoI YGGCCR 1 cut(s) 243
AfiI CCNNNNNNNGG 1 cut(s) 119
AoxI GGCC 2 cut(s) 36, 243
AspLEI GCGC 1 cut(s) 205
AsuHPI GGTGA 1 cut(s) 43
BccI CCATC 2 cut(s) 157, 220
BcgI CGANNNNNNTGC 2 cut(s) 62, 96
BisI GCNGC 2 cut(s) 113, 231
BlsI GCNGC 2 cut(s) 114, 232
BsaJI CCNNGG 1 cut(s) 246
BsaWI WCCGGW 1 cut(s) 28
Bsc4I CCNNNNNNNGG 1 cut(s) 119
Bse3DI GCAATG 1 cut(s) 109
BseDI CCNNGG 1 cut(s) 246
BseLI CCNNNNNNNGG 1 cut(s) 119
BseMI GCAATG 1 cut(s) 109
Bsh1236I CGCG 1 cut(s) 205
Bsh1285I CGRYCG 1 cut(s) 149
BshFI GGCC 2 cut(s) 38, 245
BsiEI CGRYCG 1 cut(s) 149
BsiSI CCGG 1 cut(s) 29
BslI CCNNNNNNNGG 1 cut(s) 119
BsnI GGCC 2 cut(s) 38, 245
Bsp143I GATC 1 cut(s) 9
Bsp19I CCATGG 1 cut(s) 246
BspACI CCGC 5 cut(s) 113, 145, 173, 205, 230
BspANI GGCC 2 cut(s) 38, 245
BspFNI CGCG 1 cut(s) 205
BsrDI GCAATG 1 cut(s) 109
BssECI CCNNGG 1 cut(s) 246
BssMI GATC 1 cut(s) 9
BssT1I CCWWGG 1 cut(s) 246
BstDSI CCRYGG 1 cut(s) 246
BstFNI CGCG 1 cut(s) 205
BstHHI GCGC 1 cut(s) 205
BstKTI GATC 1 cut(s) 12
BstMBI GATC 1 cut(s) 9
BstMCI CGRYCG 1 cut(s) 149
BstMWI GCNNNNNNNGC 2 cut(s) 157, 230
BstUI CGCG 1 cut(s) 205
BsuRI GGCC 2 cut(s) 38, 245
BtgI CCRYGG 1 cut(s) 246
BtgZI GCGATG 1 cut(s) 239
BtsI GCAGTG 1 cut(s) 122
BtsIMutI CAGTG 1 cut(s) 122
CfoI GCGC 1 cut(s) 205
CviAII CATG 1 cut(s) 247
CviJI RGCY 4 cut(s) 38, 160, 191, 245
CviKI_1 RGCY 4 cut(s) 38, 160, 191, 245
DpnI GATC 1 cut(s) 11
DpnII GATC 1 cut(s) 9
EaeI YGGCCR 1 cut(s) 243
EciI GGCGGA 1 cut(s) 188
Eco130I CCWWGG 1 cut(s) 246
EcoT14I CCWWGG 1 cut(s) 246
ErhI CCWWGG 1 cut(s) 246
FaeI CATG 1 cut(s) 250
FaiI YATR 3 cut(s) 215, 239, 248
FatI CATG 1 cut(s) 246
FblI GTMKAC 1 cut(s) 15
Fnu4HI GCNGC 2 cut(s) 113, 231
Fsp4HI GCNGC 2 cut(s) 113, 231
GlaI GCGC 1 cut(s) 204
GluI GCNGC 2 cut(s) 113, 231
HaeIII GGCC 2 cut(s) 38, 245
HapII CCGG 1 cut(s) 29
HhaI GCGC 1 cut(s) 205
Hin1II CATG 1 cut(s) 250
Hin6I GCGC 1 cut(s) 203
HinP1I GCGC 1 cut(s) 203
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
HpaII CCGG 1 cut(s) 29
HphI GGTGA 1 cut(s) 43
Hpy166II GTNNAC 1 cut(s) 16
Hpy188I TCNGA 2 cut(s) 46, 73
Hpy8I GTNNAC 1 cut(s) 16
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 1 cut(s) 28
HpyCH4V TGCA 1 cut(s) 102
HpyF10VI GCNNNNNNNGC 2 cut(s) 157, 230
Hsp92II CATG 1 cut(s) 250
HspAI GCGC 1 cut(s) 203
Kzo9I GATC 1 cut(s) 9
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 1 cut(s) 42
MalI GATC 1 cut(s) 11
MboI GATC 1 cut(s) 9
MfeI CAATTG 1 cut(s) 133
MluCI AATT 2 cut(s) 19, 133
MnlI CCTC 5 cut(s) 50, 52, 79, 119, 201
MspI CCGG 1 cut(s) 29
MunI CAATTG 1 cut(s) 133
MvnI CGCG 1 cut(s) 205
MwoI GCNNNNNNNGC 2 cut(s) 157, 230
NcoI CCATGG 1 cut(s) 246
NdeII GATC 1 cut(s) 9
NlaIII CATG 1 cut(s) 250
PkrI GCNGC 2 cut(s) 114, 232
SalI GTCGAC 1 cut(s) 14
SatI GCNGC 2 cut(s) 113, 231
Sau3AI GATC 1 cut(s) 9
SetI ASST 2 cut(s) 44, 130
SgeI CNNG 4 cut(s) 41, 103, 216, 246
Sse9I AATT 2 cut(s) 19, 133
SsiI CCGC 5 cut(s) 113, 145, 173, 205, 230
StyI CCWWGG 1 cut(s) 246
TaqI TCGA 1 cut(s) 15
TasI AATT 2 cut(s) 19, 133
TauI GCSGC 2 cut(s) 115, 233
TscAI CASTG 1 cut(s) 122
TspRI CASTG 1 cut(s) 122
XmiI GTMKAC 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.