Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001994

Physical Location & Seq

Genomic Coordinates Forward (+)

86868234 .. 86871218

Gene Structure 2985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG649600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGTTCAAGGCAAACCAAGAGCGTCGGGCAGTTACAGTTGGTCACCCTCTATTTGTTTTTGGCAGAAATGCAAGTGCAATTACTAGTCCTGTAACTCAGCTAAATAAGCAGTCGAAAATTAGTCTTAAATGGCGAAGAGTGGTGTTCAAAGTCAGTGGTGCTGCTCTAGCTGGCACTGCTGCTAACAACATTGACCCAAAGATAACAATGCTGATTGCGAGAGAAGTTGCAATGGCCTGCCGCAGTGGGGTGGAGGTAATGATGTGGCAATTGTTGTTGGCGGTCGCAACTTTGGCTGATGGGTGTGGCGGATTTGGGGGTTTGGGCGGTGGGGTCAGAGCGGAGGGTTATGGAGATTGCGATGGCGGCGAGTATGACGGCCATGGTGGAGTAGAGTATGGCTGCGACGTTTCCAACGCCGAGGACTCCAAGGCCAAGCTCTCGTCGTTGACCGACGTCACTCACTCACTCACCTCTTCTACGTCACCTGGACCAGCCGATCCACCGAGGTCAGTCACCGCTTTGGAGTGGGATGAGATCGAGTTTCCGGATGCTACTGGTGGACCTGTAGCTCGAGGTGTTCGACGAATCGCCACGGCAGAGGAGGACTTGGGAGTGGAACCGCCGTCGTCGTCGACGGAGAAATTGTCGACTTTGAATTCGGCGTTGTGGTCGTTACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_kinase Myb_DNA-bind_4

Protein Analysis

227

Amino Acids

23.76

Weight (kDa)

5.28

Isoelectric Point (pI)

48.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10030 AT3G10030
fragaria_vesca	FvH4_6g17490 FvH4_6g17490 FvH4_6g17490 FvH4_6g17490
malus_domestica	MD12G1097000.v1.1 MD14G1094100.v1.1
prunus_persica	Prupe.7G120600_v2.0.a1 Prupe.7G120600_v2.0.a1 Prupe.7G120600_v2.0.a1 Prupe.7G120600_v2.0.a1 Prupe.7G120600_v2.0.a1 Prupe.7G120600_v2.0.a1
pyrus_communis	pycom14g09190
rosa_chinensis	RchiOBHm_Chr2g0173511 RchiOBHm_Chr3g0471731 RchiOBHm_Chr5g0071181
rosa_laevigata	RLG00000015608 RLG00000024138 RLG00000024278 RLG00000036093
rosa_multiflora	Rmu_sc0002476.1_g000019 Rmu_sc0004577.1_g000005 Rmu_sc0004577.1_g000006 Rmu_sc0013806.1_g000003 Rmu_sc0040530.1_g000001 Rmu_sc0041385.1_g000001 Rmu_ssc0000126.1_g000037 Rmu_ssc0000126.1_g000038
rosa_roxburghii	Rroxscaffold_3G00223840 Rroxscaffold_3G00265600 Rroxscaffold_6G00393240 Rroxscaffold_6G00409600
rosa_rugosa	Rorug03G0119300 Rorug03G0119400
rosa_samantha	Rh1CG168000 Rh2AG649600 Rh2DG555500 Rh2DG675400 Rh3BG196400 Rh3DG178500 Rh4BG099200 Rh4BG396300
rosa_wichuraiana	Rw0G009050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	459
AccBSI	CCGCTC	1 cut(s)	341
AccI	GTMKAC	2 cut(s)	635, 650
AccIII	TCCGGA	1 cut(s)	547
AciI	CCGC	8 cut(s)	241, 281, 309, 327, 341, 366, 519, 623
AclWI	GGATC	1 cut(s)	494
AcoI	YGGCCR	1 cut(s)	379
AcsI	RAATTY	1 cut(s)	658
AcyI	GRCGYC	1 cut(s)	456
AfiI	CCNNNNNNNGG	1 cut(s)	247
AgsI	TTSAA	3 cut(s)	7, 148, 658
AhlI	ACTAGT	1 cut(s)	83
AjnI	CCWGG	1 cut(s)	487
AluBI	AGCT	4 cut(s)	100, 170, 439, 572
AluI	AGCT	4 cut(s)	100, 170, 439, 572
AlwI	GGATC	1 cut(s)	494
Ama87I	CYCGRG	1 cut(s)	573
Aor13HI	TCCGGA	1 cut(s)	547
AoxI	GGCC	3 cut(s)	234, 379, 432
ApeKI	GCWGC	3 cut(s)	161, 179, 402
ApoI	RAATTY	1 cut(s)	658
ArsI	GACNNNNNNTTYG	2 cut(s)	643, 675
AspS9I	GGNCC	2 cut(s)	491, 563
AsuHPI	GGTGA	4 cut(s)	35, 463, 477, 508
AvaI	CYCGRG	1 cut(s)	573
AvaII	GGWCC	2 cut(s)	491, 563
BbvI	GCAGC	3 cut(s)	148, 166, 389
BccI	CCATC	2 cut(s)	293, 356
BceAI	ACGGC	3 cut(s)	394, 610, 612
BciT130I	CCWGG	1 cut(s)	489
BcuI	ACTAGT	1 cut(s)	83
BfaI	CTAG	2 cut(s)	84, 167
BfmI	CTRYAG	1 cut(s)	567
BisI	GCNGC	5 cut(s)	162, 180, 241, 367, 403
BlsI	GCNGC	5 cut(s)	163, 181, 242, 368, 404
Bme1390I	CCNGG	1 cut(s)	489
Bme18I	GGWCC	2 cut(s)	491, 563
BmeT110I	CYCGRG	1 cut(s)	573
BmgT120I	GGNCC	2 cut(s)	491, 563
BmiI	GGNNCC	1 cut(s)	621
BmrFI	CCNGG	1 cut(s)	489
BmsI	GCATC	1 cut(s)	541
BoxI	GACNNNNGTC	1 cut(s)	455
BsaHI	GRCGYC	1 cut(s)	456
BsaJI	CCNNGG	5 cut(s)	382, 420, 429, 506, 594
BsaWI	WCCGGW	1 cut(s)	547
BsaXI	ACNNNNNCTCC	2 cut(s)	632, 662
Bsc4I	CCNNNNNNNGG	1 cut(s)	247
Bse1I	ACTGG	1 cut(s)	562
Bse3DI	GCAATG	1 cut(s)	237
BseAI	TCCGGA	1 cut(s)	547
BseBI	CCWGG	1 cut(s)	489
BseDI	CCNNGG	5 cut(s)	382, 420, 429, 506, 594
BseGI	GGATG	2 cut(s)	538, 556
BseLI	CCNNNNNNNGG	1 cut(s)	247
BseMI	GCAATG	1 cut(s)	237
BseMII	CTCAG	1 cut(s)	110
BseNI	ACTGG	1 cut(s)	562
BseRI	GAGGAG	1 cut(s)	617
BseXI	GCAGC	3 cut(s)	148, 166, 389
Bsh1285I	CGRYCG	1 cut(s)	285
BshFI	GGCC	3 cut(s)	236, 381, 434
BsiEI	CGRYCG	1 cut(s)	285
BsiHKCI	CYCGRG	1 cut(s)	573
BsiSI	CCGG	1 cut(s)	548
BslI	CCNNNNNNNGG	1 cut(s)	247
BsnI	GGCC	3 cut(s)	236, 381, 434
BsoBI	CYCGRG	1 cut(s)	573
Bsp13I	TCCGGA	1 cut(s)	547
Bsp143I	GATC	2 cut(s)	499, 537
Bsp19I	CCATGG	1 cut(s)	382
BspACI	CCGC	8 cut(s)	241, 281, 309, 327, 341, 366, 519, 623
BspANI	GGCC	3 cut(s)	236, 381, 434
BspCNI	CTCAG	1 cut(s)	109
BspEI	TCCGGA	1 cut(s)	547
BspLI	GGNNCC	1 cut(s)	621
BspPI	GGATC	1 cut(s)	494
BsrBI	CCGCTC	1 cut(s)	341
BsrDI	GCAATG	1 cut(s)	237
BsrI	ACTGG	1 cut(s)	562
BssECI	CCNNGG	5 cut(s)	382, 420, 429, 506, 594
BssMI	GATC	2 cut(s)	499, 537
BssNI	GRCGYC	1 cut(s)	456
BssT1I	CCWWGG	2 cut(s)	382, 429
Bst2UI	CCWGG	1 cut(s)	489
Bst4CI	ACNGT	1 cut(s)	37
Bst6I	CTCTTC	2 cut(s)	130, 481
BstACI	GRCGYC	1 cut(s)	456
BstC8I	GCNNGC	2 cut(s)	172, 238
BstDEI	CTNAG	1 cut(s)	96
BstDSI	CCRYGG	2 cut(s)	382, 594
BstEII	GGTNACC	1 cut(s)	41
BstF5I	GGATG	2 cut(s)	538, 556
BstKTI	GATC	2 cut(s)	502, 540
BstMBI	GATC	2 cut(s)	499, 537
BstMCI	CGRYCG	1 cut(s)	285
BstMWI	GCNNNNNNNGC	5 cut(s)	106, 167, 176, 293, 366
BstNI	CCWGG	1 cut(s)	489
BstPAI	GACNNNNGTC	1 cut(s)	455
BstPI	GGTNACC	1 cut(s)	41
BstSCI	CCNGG	1 cut(s)	487
BstSFI	CTRYAG	1 cut(s)	567
BstV1I	GCAGC	3 cut(s)	148, 166, 389
BsuRI	GGCC	3 cut(s)	236, 381, 434
BtgI	CCRYGG	2 cut(s)	382, 594
BtgZI	GCGATG	1 cut(s)	375
BtsCI	GGATG	2 cut(s)	538, 556
BtsI	GCAGTG	2 cut(s)	174, 250
BtsIMutI	CAGTG	3 cut(s)	160, 174, 250
Cac8I	GCNNGC	2 cut(s)	172, 238
Cfr13I	GGNCC	2 cut(s)	491, 563
CseI	GACGC	1 cut(s)	11
CspCI	CAANNNNNGTGG	2 cut(s)	136, 171
CviAII	CATG	1 cut(s)	383
DdeI	CTNAG	1 cut(s)	96
DpnI	GATC	2 cut(s)	501, 539
DpnII	GATC	2 cut(s)	499, 537
EaeI	YGGCCR	1 cut(s)	379
Eam1104I	CTCTTC	2 cut(s)	130, 481
EarI	CTCTTC	2 cut(s)	130, 481
EciI	GGCGGA	1 cut(s)	324
Eco130I	CCWWGG	2 cut(s)	382, 429
Eco47I	GGWCC	2 cut(s)	491, 563
Eco88I	CYCGRG	1 cut(s)	573
Eco91I	GGTNACC	1 cut(s)	41
EcoO65I	GGTNACC	1 cut(s)	41
EcoRI	GAATTC	1 cut(s)	658
EcoRII	CCWGG	1 cut(s)	487
EcoT14I	CCWWGG	2 cut(s)	382, 429
ErhI	CCWWGG	2 cut(s)	382, 429
FaeI	CATG	1 cut(s)	386
FaiI	YATR	5 cut(s)	351, 375, 384, 399, 682
FatI	CATG	1 cut(s)	382
FblI	GTMKAC	2 cut(s)	635, 650
Fnu4HI	GCNGC	5 cut(s)	162, 180, 241, 367, 403
FokI	GGATG	2 cut(s)	545, 563
Fsp4HI	GCNGC	5 cut(s)	162, 180, 241, 367, 403
FspBI	CTAG	2 cut(s)	84, 167
GluI	GCNGC	5 cut(s)	162, 180, 241, 367, 403
HaeIII	GGCC	3 cut(s)	236, 381, 434
HapII	CCGG	1 cut(s)	548
HgaI	GACGC	1 cut(s)	11
Hin1I	GRCGYC	1 cut(s)	456
Hin1II	CATG	1 cut(s)	386
HincII	GTYRAC	3 cut(s)	450, 636, 651
HindII	GTYRAC	3 cut(s)	450, 636, 651
HinfI	GANTC	2 cut(s)	425, 588
HpaII	CCGG	1 cut(s)	548
HphI	GGTGA	4 cut(s)	35, 463, 477, 508
Hpy166II	GTNNAC	4 cut(s)	450, 563, 636, 651
Hpy188I	TCNGA	1 cut(s)	338
Hpy188III	TCNNGA	1 cut(s)	548
Hpy8I	GTNNAC	4 cut(s)	450, 563, 636, 651
Hpy99I	CGWCG	9 cut(s)	27, 410, 448, 458, 588, 631, 634, 637, 640
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4IV	ACGT	3 cut(s)	408, 456, 482
HpyCH4V	TGCA	3 cut(s)	71, 77, 230
HpyF10VI	GCNNNNNNNGC	5 cut(s)	106, 167, 176, 293, 366
HpyF3I	CTNAG	1 cut(s)	96
HpySE526I	ACGT	3 cut(s)	408, 456, 482
Hsp92I	GRCGYC	1 cut(s)	456
Hsp92II	CATG	1 cut(s)	386
Kpn2I	TCCGGA	1 cut(s)	547
Kzo9I	GATC	2 cut(s)	499, 537
LpnPI	CCDG	9 cut(s)	102, 156, 250, 474, 501, 507, 543, 561, 579
Lsp1109I	GCAGC	3 cut(s)	148, 166, 389
LweI	GCATC	1 cut(s)	541
MaeI	CTAG	2 cut(s)	84, 167
MaeII	ACGT	3 cut(s)	408, 456, 482
MaeIII	GTNAC	7 cut(s)	31, 41, 91, 457, 483, 514, 675
MalI	GATC	2 cut(s)	501, 539
MbiI	CCGCTC	1 cut(s)	341
MboI	GATC	2 cut(s)	499, 537
MboII	GAAGA	2 cut(s)	147, 468
MfeI	CAATTG	1 cut(s)	269
MluCI	AATT	5 cut(s)	78, 117, 269, 644, 658
MlyI	GAGTC	1 cut(s)	419
MmeI	TCCRAC	1 cut(s)	438
MnlI	CCTC	9 cut(s)	57, 247, 337, 415, 484, 501, 569, 595, 598
MroI	TCCGGA	1 cut(s)	547
MseI	TTAA	1 cut(s)	126
MspI	CCGG	1 cut(s)	548
MspR9I	CCNGG	1 cut(s)	489
MunI	CAATTG	1 cut(s)	269
MvaI	CCWGG	1 cut(s)	489
MwoI	GCNNNNNNNGC	5 cut(s)	106, 167, 176, 293, 366
NcoI	CCATGG	1 cut(s)	382
NdeII	GATC	2 cut(s)	499, 537
NlaIII	CATG	1 cut(s)	386
NlaIV	GGNNCC	1 cut(s)	621
NmeAIII	GCCGAG	1 cut(s)	445
NmuCI	GTSAC	4 cut(s)	41, 457, 483, 514
PaeR7I	CTCGAG	1 cut(s)	573
PcsI	WCGNNNNNNNCGW	1 cut(s)	580
PfeI	GAWTC	1 cut(s)	588
PkrI	GCNGC	5 cut(s)	163, 181, 242, 368, 404
PleI	GAGTC	1 cut(s)	419
PpsI	GAGTC	1 cut(s)	419
PshAI	GACNNNNGTC	1 cut(s)	455
Psp6I	CCWGG	1 cut(s)	487
PspEI	GGTNACC	1 cut(s)	41
PspGI	CCWGG	1 cut(s)	487
PspN4I	GGNNCC	1 cut(s)	621
PspPI	GGNCC	2 cut(s)	491, 563
PspXI	VCTCGAGB	1 cut(s)	573
SalI	GTCGAC	2 cut(s)	634, 649
SaqAI	TTAA	1 cut(s)	126
SatI	GCNGC	5 cut(s)	162, 180, 241, 367, 403
Sau3AI	GATC	2 cut(s)	499, 537
Sau96I	GGNCC	2 cut(s)	491, 563
SchI	GAGTC	1 cut(s)	419
ScrFI	CCNGG	1 cut(s)	489
SfaNI	GCATC	1 cut(s)	541
SfcI	CTRYAG	1 cut(s)	567
Sfr274I	CTCGAG	1 cut(s)	573
SgrDI	CGTCGACG	1 cut(s)	634
SinI	GGWCC	2 cut(s)	491, 563
SlaI	CTCGAG	1 cut(s)	573
SmlI	CTYRAG	1 cut(s)	573
SmoI	CTYRAG	1 cut(s)	573
SpeI	ACTAGT	1 cut(s)	83
Sse9I	AATT	5 cut(s)	78, 117, 269, 644, 658
SsiI	CCGC	8 cut(s)	241, 281, 309, 327, 341, 366, 519, 623
SspMI	CTAG	2 cut(s)	84, 167
StyD4I	CCNGG	1 cut(s)	487
StyI	CCWWGG	2 cut(s)	382, 429
TaaI	ACNGT	1 cut(s)	37
TaiI	ACGT	3 cut(s)	411, 459, 485
TaqI	TCGA	6 cut(s)	113, 540, 574, 583, 635, 650
TaqII	GACCGA	1 cut(s)	467
TasI	AATT	5 cut(s)	78, 117, 269, 644, 658
TauI	GCSGC	2 cut(s)	243, 369
TfiI	GAWTC	1 cut(s)	588
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TscAI	CASTG	3 cut(s)	160, 181, 250
TseFI	GTSAC	4 cut(s)	41, 457, 483, 514
TseI	GCWGC	3 cut(s)	161, 179, 402
Tsp45I	GTSAC	4 cut(s)	41, 457, 483, 514
TspGWI	ACGGA	1 cut(s)	653
TspRI	CASTG	3 cut(s)	160, 181, 250
VpaK11BI	GGWCC	2 cut(s)	491, 563
XapI	RAATTY	1 cut(s)	658
XhoI	CTCGAG	1 cut(s)	573
XmiI	GTMKAC	2 cut(s)	635, 650
XspI	CTAG	2 cut(s)	84, 167
ZraI	GACGTC	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.