Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004577.1

Orthogroup ID

OG0001994

Physical Location & Seq

Genomic Coordinates Forward (+)

9662 .. 12517

Gene Structure 2856 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004577.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

atggccagaaaaagtctccggaggtcgccggaaaagtggtcggaaaacaggtggctggcggtggtggtcggagctaagttgggctgtgcggggctgctgcaggggttgtgcggagctactgcaagggggctgcgtaggggttcgcaggctctcggcagatgctcggcatgggcaagcagcttctcggcagagactcggcagatgctcggcaggtgcaggcacacatctcaacaggtgtcggcaggactcggcaggaggcgcgcaggggctatctacaggtctcggcagatgcatgcacaggggttgattccggccggttccggtggttccgcagccggttctgagatccttgggactagggctactatatgtgaggcggtggcccttggtggaacctctactattggtgaaggagattggcctccagatcgagccgcgactccgcctgctttcgttagtggcagtgtgaaaaaaaataaccctttcgacagccgcactgatcagaaggatgtcgcgtcgaagataaaggaccaatccgatgagctcagcgacggagccggcggcgacggtggtggtgaagaaggaggaggaggttcgtacaccatcatcaggagattgaaatcctcggccgtggcctccggagagtaccggaaggaccgcgaggagtggagcgacggcaagatcgcttgccttctcgatgcttacatggacaagttcacacagctgaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_kinase Myb_DNA-bind_4

Protein Analysis

243

Amino Acids

25.58

Weight (kDa)

9.56

Isoelectric Point (pI)

54.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10030 AT3G10030
fragaria_vesca	FvH4_6g17490 FvH4_6g17490 FvH4_6g17490 FvH4_6g17490
malus_domestica	MD12G1097000.v1.1 MD14G1094100.v1.1
prunus_persica	Prupe.7G120600_v2.0.a1 Prupe.7G120600_v2.0.a1 Prupe.7G120600_v2.0.a1 Prupe.7G120600_v2.0.a1 Prupe.7G120600_v2.0.a1 Prupe.7G120600_v2.0.a1
pyrus_communis	pycom14g09190
rosa_chinensis	RchiOBHm_Chr2g0173511 RchiOBHm_Chr3g0471731 RchiOBHm_Chr5g0071181
rosa_laevigata	RLG00000015608 RLG00000024138 RLG00000024278 RLG00000036093
rosa_multiflora	Rmu_sc0002476.1_g000019 Rmu_sc0004577.1_g000005 Rmu_sc0004577.1_g000006 Rmu_sc0013806.1_g000003 Rmu_sc0040530.1_g000001 Rmu_sc0041385.1_g000001 Rmu_ssc0000126.1_g000037 Rmu_ssc0000126.1_g000038
rosa_roxburghii	Rroxscaffold_3G00223840 Rroxscaffold_3G00265600 Rroxscaffold_6G00393240 Rroxscaffold_6G00409600
rosa_rugosa	Rorug03G0119300 Rorug03G0119400
rosa_samantha	Rh1CG168000 Rh2AG649600 Rh2DG555500 Rh2DG675400 Rh3BG196400 Rh3DG178500 Rh4BG099200 Rh4BG396300
rosa_wichuraiana	Rw0G009050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	201
Acc36I	ACCTGC	1 cut(s)	201
AccII	CGCG	4 cut(s)	261, 437, 515, 660
AccIII	TCCGGA	2 cut(s)	18, 638
AclWI	GGATC	1 cut(s)	340
AcoI	YGGCCR	3 cut(s)	3, 312, 627
AfaI	GTAC	2 cut(s)	599, 647
AfiI	CCNNNNNNNGG	1 cut(s)	609
AgsI	TTSAA	1 cut(s)	619
AluBI	AGCT	5 cut(s)	74, 116, 180, 544, 724
AluI	AGCT	5 cut(s)	74, 116, 180, 544, 724
Alw21I	GWGCWC	1 cut(s)	546
Alw26I	GTCTC	3 cut(s)	20, 185, 285
AlwI	GGATC	1 cut(s)	340
Aor13HI	TCCGGA	2 cut(s)	18, 638
AoxI	GGCC	6 cut(s)	3, 312, 381, 419, 627, 633
ApeKI	GCWGC	5 cut(s)	94, 97, 130, 177, 332
AspLEI	GCGC	2 cut(s)	261, 263
AspS9I	GGNCC	3 cut(s)	382, 529, 655
AsuHPI	GGTGA	2 cut(s)	419, 587
AvaII	GGWCC	2 cut(s)	529, 655
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	546
Bbv12I	GWGCWC	1 cut(s)	546
BbvI	GCAGC	5 cut(s)	81, 84, 117, 189, 344
BccI	CCATC	1 cut(s)	611
BceAI	ACGGC	2 cut(s)	614, 691
BclI	TGATCA	1 cut(s)	499
BcoDI	GTCTC	3 cut(s)	20, 185, 285
BfaI	CTAG	1 cut(s)	357
BfmI	CTRYAG	2 cut(s)	98, 274
BfuAI	ACCTGC	1 cut(s)	201
BisI	GCNGC	8 cut(s)	95, 98, 131, 178, 333, 435, 493, 562
BlpI	GCTNAGC	1 cut(s)	545
BlsI	GCNGC	8 cut(s)	96, 99, 132, 179, 334, 436, 494, 563
Bme18I	GGWCC	2 cut(s)	529, 655
BmgT120I	GGNCC	3 cut(s)	382, 529, 655
BmiI	GGNNCC	4 cut(s)	319, 328, 394, 556
BmsI	GCATC	4 cut(s)	149, 192, 279, 688
BpmI	CTGGAG	1 cut(s)	408
Bpu1102I	GCTNAGC	1 cut(s)	545
BsaBI	GATNNNNATC	1 cut(s)	619
BsaI	GGTCTC	1 cut(s)	285
BsaJI	CCNNGG	4 cut(s)	349, 385, 624, 630
BsaWI	WCCGGW	4 cut(s)	18, 320, 638, 648
Bsc4I	CCNNNNNNNGG	1 cut(s)	609
Bse118I	RCCGGY	3 cut(s)	314, 335, 557
Bse8I	GATNNNNATC	1 cut(s)	619
BseAI	TCCGGA	2 cut(s)	18, 638
BseDI	CCNNGG	4 cut(s)	349, 385, 624, 630
BseGI	GGATG	1 cut(s)	514
BseJI	GATNNNNATC	1 cut(s)	619
BseLI	CCNNNNNNNGG	1 cut(s)	609
BseMII	CTCAG	2 cut(s)	333, 559
BsePI	GCGCGC	1 cut(s)	259
BseRI	GAGGAG	3 cut(s)	600, 603, 677
BseX3I	CGGCCG	2 cut(s)	312, 627
BseXI	GCAGC	5 cut(s)	81, 84, 117, 189, 344
BsgI	GTGCAG	1 cut(s)	235
Bsh1236I	CGCG	4 cut(s)	261, 437, 515, 660
Bsh1285I	CGRYCG	2 cut(s)	315, 630
BshFI	GGCC	6 cut(s)	5, 314, 383, 421, 629, 635
BsiEI	CGRYCG	2 cut(s)	315, 630
BsiHKAI	GWGCWC	1 cut(s)	546
BsiSI	CCGG	9 cut(s)	19, 29, 311, 315, 321, 336, 558, 639, 649
BslFI	GGGAC	1 cut(s)	367
BslI	CCNNNNNNNGG	1 cut(s)	609
BsmAI	GTCTC	3 cut(s)	20, 185, 285
BsmFI	GGGAC	1 cut(s)	367
BsnI	GGCC	6 cut(s)	5, 314, 383, 421, 629, 635
Bso31I	GGTCTC	1 cut(s)	285
Bsp1286I	GDGCHC	1 cut(s)	546
Bsp13I	TCCGGA	2 cut(s)	18, 638
Bsp143I	GATC	4 cut(s)	345, 427, 499, 681
Bsp1720I	GCTNAGC	1 cut(s)	545
BspANI	GGCC	6 cut(s)	5, 314, 383, 421, 629, 635
BspCNI	CTCAG	2 cut(s)	334, 558
BspEI	TCCGGA	2 cut(s)	18, 638
BspFNI	CGCG	4 cut(s)	261, 437, 515, 660
BspLI	GGNNCC	4 cut(s)	319, 328, 394, 556
BspMAI	CTGCAG	1 cut(s)	102
BspMI	ACCTGC	1 cut(s)	201
BspPI	GGATC	1 cut(s)	340
BspTNI	GGTCTC	1 cut(s)	285
BsrFI	RCCGGY	3 cut(s)	314, 335, 557
BssAI	RCCGGY	3 cut(s)	314, 335, 557
BssECI	CCNNGG	4 cut(s)	349, 385, 624, 630
BssHII	GCGCGC	1 cut(s)	259
BssMI	GATC	4 cut(s)	345, 427, 499, 681
BssT1I	CCWWGG	2 cut(s)	349, 385
Bst4CI	ACNGT	1 cut(s)	569
BstC8I	GCNNGC	9 cut(s)	57, 147, 175, 218, 261, 294, 447, 559, 688
BstDEI	CTNAG	3 cut(s)	75, 342, 545
BstDSI	CCRYGG	1 cut(s)	630
BstF5I	GGATG	1 cut(s)	514
BstFNI	CGCG	4 cut(s)	261, 437, 515, 660
BstHHI	GCGC	2 cut(s)	261, 263
BstKTI	GATC	4 cut(s)	348, 430, 502, 684
BstMAI	GTCTC	3 cut(s)	20, 185, 285
BstMBI	GATC	4 cut(s)	345, 427, 499, 681
BstMCI	CGRYCG	2 cut(s)	315, 630
BstMWI	GCNNNNNNNGC	1 cut(s)	258
BstNSI	RCATGY	1 cut(s)	296
BstSFI	CTRYAG	2 cut(s)	98, 274
BstUI	CGCG	4 cut(s)	261, 437, 515, 660
BstV1I	GCAGC	5 cut(s)	81, 84, 117, 189, 344
BstX2I	RGATCY	1 cut(s)	345
BstYI	RGATCY	1 cut(s)	345
BstZI	CGGCCG	2 cut(s)	312, 627
BsuRI	GGCC	6 cut(s)	5, 314, 383, 421, 629, 635
BtgI	CCRYGG	1 cut(s)	630
BtsCI	GGATG	1 cut(s)	514
BtsI	GCAGTG	1 cut(s)	469
BtsIMutI	CAGTG	2 cut(s)	469, 495
BveI	ACCTGC	1 cut(s)	201
Cac8I	GCNNGC	9 cut(s)	57, 147, 175, 218, 261, 294, 447, 559, 688
CfoI	GCGC	2 cut(s)	261, 263
Cfr10I	RCCGGY	3 cut(s)	314, 335, 557
Cfr13I	GGNCC	3 cut(s)	382, 529, 655
CseI	GACGC	1 cut(s)	504
Csp6I	GTAC	2 cut(s)	598, 646
CviAII	CATG	3 cut(s)	168, 293, 706
CviQI	GTAC	2 cut(s)	598, 646
DdeI	CTNAG	3 cut(s)	75, 342, 545
DpnI	GATC	4 cut(s)	347, 429, 501, 683
DpnII	GATC	4 cut(s)	345, 427, 499, 681
EaeI	YGGCCR	3 cut(s)	3, 312, 627
EagI	CGGCCG	2 cut(s)	312, 627
EciI	GGCGGA	1 cut(s)	432
Ecl136II	GAGCTC	1 cut(s)	544
EclXI	CGGCCG	2 cut(s)	312, 627
Eco130I	CCWWGG	2 cut(s)	349, 385
Eco24I	GRGCYC	1 cut(s)	546
Eco31I	GGTCTC	1 cut(s)	285
Eco47I	GGWCC	2 cut(s)	529, 655
Eco52I	CGGCCG	2 cut(s)	312, 627
Eco53kI	GAGCTC	1 cut(s)	544
EcoICRI	GAGCTC	1 cut(s)	544
EcoT14I	CCWWGG	2 cut(s)	349, 385
EcoT22I	ATGCAT	1 cut(s)	294
EcoT38I	GRGCYC	1 cut(s)	546
ErhI	CCWWGG	2 cut(s)	349, 385
FaeI	CATG	3 cut(s)	171, 296, 709
FaiI	YATR	5 cut(s)	169, 294, 368, 370, 707
FaqI	GGGAC	1 cut(s)	367
FatI	CATG	3 cut(s)	167, 292, 705
FauI	CCCGC	1 cut(s)	82
FbaI	TGATCA	1 cut(s)	499
Fnu4HI	GCNGC	8 cut(s)	95, 98, 131, 178, 333, 435, 493, 562
FokI	GGATG	1 cut(s)	521
FriOI	GRGCYC	1 cut(s)	546
Fsp4HI	GCNGC	8 cut(s)	95, 98, 131, 178, 333, 435, 493, 562
FspBI	CTAG	1 cut(s)	357
GlaI	GCGC	2 cut(s)	260, 262
GluI	GCNGC	8 cut(s)	95, 98, 131, 178, 333, 435, 493, 562
GsuI	CTGGAG	1 cut(s)	408
HaeIII	GGCC	6 cut(s)	5, 314, 383, 421, 629, 635
HapII	CCGG	9 cut(s)	19, 29, 311, 315, 321, 336, 558, 639, 649
HgaI	GACGC	1 cut(s)	504
HhaI	GCGC	2 cut(s)	261, 263
Hin1II	CATG	3 cut(s)	171, 296, 709
Hin6I	GCGC	2 cut(s)	259, 261
HinP1I	GCGC	2 cut(s)	259, 261
HinfI	GANTC	4 cut(s)	193, 246, 307, 439
HpaII	CCGG	9 cut(s)	19, 29, 311, 315, 321, 336, 558, 639, 649
HphI	GGTGA	2 cut(s)	419, 587
Hpy166II	GTNNAC	2 cut(s)	600, 717
Hpy188I	TCNGA	5 cut(s)	43, 71, 343, 504, 538
Hpy188III	TCNNGA	5 cut(s)	19, 425, 610, 639, 695
Hpy8I	GTNNAC	2 cut(s)	600, 717
Hpy99I	CGWCG	4 cut(s)	520, 554, 569, 677
HpyAV	CCTTC	5 cut(s)	404, 499, 575, 646, 701
HpyCH4III	ACNGT	1 cut(s)	569
HpyCH4V	TGCA	5 cut(s)	100, 122, 216, 292, 296
HpyF10VI	GCNNNNNNNGC	1 cut(s)	258
HpyF3I	CTNAG	3 cut(s)	75, 342, 545
Hsp92II	CATG	3 cut(s)	171, 296, 709
HspAI	GCGC	2 cut(s)	259, 261
Kpn2I	TCCGGA	2 cut(s)	18, 638
KroI	GCCGGC	1 cut(s)	557
KroNI	GCCGGC	1 cut(s)	559
Ksp22I	TGATCA	1 cut(s)	499
Kzo9I	GATC	4 cut(s)	345, 427, 499, 681
LmnI	GCTCC	4 cut(s)	71, 113, 554, 669
Lsp1109I	GCAGC	5 cut(s)	81, 84, 117, 189, 344
LweI	GCATC	4 cut(s)	149, 192, 279, 688
MaeI	CTAG	1 cut(s)	357
MalI	GATC	4 cut(s)	347, 429, 501, 683
MboI	GATC	4 cut(s)	345, 427, 499, 681
MboII	GAAGA	2 cut(s)	532, 590
MflI	RGATCY	1 cut(s)	345
MhlI	GDGCHC	1 cut(s)	546
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	727
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	187, 240, 433
MmeI	TCCRAC	2 cut(s)	21, 49
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	294
MroI	TCCGGA	2 cut(s)	18, 638
MroNI	GCCGGC	1 cut(s)	557
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	724
MspI	CCGG	9 cut(s)	19, 29, 311, 315, 321, 336, 558, 639, 649
MvnI	CGCG	4 cut(s)	261, 437, 515, 660
MwoI	GCNNNNNNNGC	1 cut(s)	258
NaeI	GCCGGC	1 cut(s)	559
NdeII	GATC	4 cut(s)	345, 427, 499, 681
NgoMIV	GCCGGC	1 cut(s)	557
NlaIII	CATG	3 cut(s)	171, 296, 709
NlaIV	GGNNCC	4 cut(s)	319, 328, 394, 556
NmeAIII	GCCGAG	8 cut(s)	132, 143, 164, 175, 186, 228, 262, 605
NsiI	ATGCAT	1 cut(s)	294
NspI	RCATGY	1 cut(s)	296
PaeI	GCATGC	1 cut(s)	296
PaqCI	CACCTGC	1 cut(s)	201
PauI	GCGCGC	1 cut(s)	259
PdiI	GCCGGC	1 cut(s)	559
PfeI	GAWTC	1 cut(s)	307
PkrI	GCNGC	8 cut(s)	96, 99, 132, 179, 334, 436, 494, 563
PleI	GAGTC	3 cut(s)	187, 240, 433
PpsI	GAGTC	3 cut(s)	187, 240, 433
Psp124BI	GAGCTC	1 cut(s)	546
PspN4I	GGNNCC	4 cut(s)	319, 328, 394, 556
PspPI	GGNCC	3 cut(s)	382, 529, 655
PstI	CTGCAG	1 cut(s)	102
PsuI	RGATCY	1 cut(s)	345
PteI	GCGCGC	1 cut(s)	259
PvuII	CAGCTG	1 cut(s)	724
RsaI	GTAC	2 cut(s)	599, 647
RsaNI	GTAC	2 cut(s)	598, 646
SacI	GAGCTC	1 cut(s)	546
SatI	GCNGC	8 cut(s)	95, 98, 131, 178, 333, 435, 493, 562
Sau3AI	GATC	4 cut(s)	345, 427, 499, 681
Sau96I	GGNCC	3 cut(s)	382, 529, 655
SchI	GAGTC	3 cut(s)	187, 240, 433
SduI	GDGCHC	1 cut(s)	546
SfaNI	GCATC	4 cut(s)	149, 192, 279, 688
SfcI	CTRYAG	2 cut(s)	98, 274
SinI	GGWCC	2 cut(s)	529, 655
SphI	GCATGC	1 cut(s)	296
Sse9I	AATT	1 cut(s)	727
SspMI	CTAG	1 cut(s)	357
SstI	GAGCTC	1 cut(s)	546
StyI	CCWWGG	2 cut(s)	349, 385
TaaI	ACNGT	1 cut(s)	569
TaqI	TCGA	4 cut(s)	430, 486, 518, 696
TasI	AATT	1 cut(s)	727
TauI	GCSGC	3 cut(s)	437, 495, 564
TfiI	GAWTC	1 cut(s)	307
TscAI	CASTG	2 cut(s)	469, 502
TseI	GCWGC	5 cut(s)	94, 97, 130, 177, 332
TspGWI	ACGGA	1 cut(s)	567
TspRI	CASTG	2 cut(s)	469, 502
VpaK11BI	GGWCC	2 cut(s)	529, 655
XceI	RCATGY	1 cut(s)	296
XspI	CTAG	1 cut(s)	357
Zsp2I	ATGCAT	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.