Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002476.1

Orthogroup ID

OG0001994

Physical Location & Seq

Genomic Coordinates Forward (+)

66718 .. 69636

Gene Structure 2919 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002476.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

atggctagaaaaagtctccggaggtcgccgaaaaagtggtcggaaaacaggtggccggcggtggtggtcggagctaagttgggctgtgcggggctgctgcaggggctctcggcagatgctcggcaggggcaagcagcttctcggcaggggctaggcagagactcggcagatgtcggcagatgctcggcaggtgcaggcacacgtctcaacaggcttagggcaggcacaagaggcaagggtgggttcagtttttccaacggccggttcaggttgattccggtcggttccggtggttccgcagccggttctgggctccttgggactagggctacgatatgtgaggcggaatttgcttccttttcgtttctctggttgcttttgatggcggaggttggttgtggtcctcttgcagcggcggccctgtctgtgctgcgagcggaaaaaaataaccctttcgacaaccgcactgatcagaaggatgtcgcgtcgaagataaaggaccaatccgatgagctcaacgacggagccagcggtgacggtggtggtgaagaaggaggaggaggttcgtacaccatcatcaggagatcgaaatcctcggccgtggccgccggagagtaccggaaggaccgcgaggagtggagcgacggcgcgatcgcttgccttctcgatgcttacatggacaagttcacacagctgaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_kinase Myb_DNA-bind_4

Protein Analysis

233

Amino Acids

24.4

Weight (kDa)

9.44

Isoelectric Point (pI)

39.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10030 AT3G10030
fragaria_vesca	FvH4_6g17490 FvH4_6g17490 FvH4_6g17490 FvH4_6g17490
malus_domestica	MD12G1097000.v1.1 MD14G1094100.v1.1
prunus_persica	Prupe.7G120600_v2.0.a1 Prupe.7G120600_v2.0.a1 Prupe.7G120600_v2.0.a1 Prupe.7G120600_v2.0.a1 Prupe.7G120600_v2.0.a1 Prupe.7G120600_v2.0.a1
pyrus_communis	pycom14g09190
rosa_chinensis	RchiOBHm_Chr2g0173511 RchiOBHm_Chr3g0471731 RchiOBHm_Chr5g0071181
rosa_laevigata	RLG00000015608 RLG00000024138 RLG00000024278 RLG00000036093
rosa_multiflora	Rmu_sc0002476.1_g000019 Rmu_sc0004577.1_g000005 Rmu_sc0004577.1_g000006 Rmu_sc0013806.1_g000003 Rmu_sc0040530.1_g000001 Rmu_sc0041385.1_g000001 Rmu_ssc0000126.1_g000037 Rmu_ssc0000126.1_g000038
rosa_roxburghii	Rroxscaffold_3G00223840 Rroxscaffold_3G00265600 Rroxscaffold_6G00393240 Rroxscaffold_6G00409600
rosa_rugosa	Rorug03G0119300 Rorug03G0119400
rosa_samantha	Rh1CG168000 Rh2AG649600 Rh2DG555500 Rh2DG675400 Rh3BG196400 Rh3DG178500 Rh4BG099200 Rh4BG396300
rosa_wichuraiana	Rw0G009050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	179
Acc36I	ACCTGC	1 cut(s)	179
AccBSI	CCGCTC	1 cut(s)	437
AccII	CGCG	3 cut(s)	485, 630, 650
AccIII	TCCGGA	1 cut(s)	18
AcoI	YGGCCR	4 cut(s)	53, 259, 597, 603
AcsI	RAATTY	1 cut(s)	347
AfaI	GTAC	2 cut(s)	569, 617
AfiI	CCNNNNNNNGG	3 cut(s)	261, 309, 579
AflIII	ACRYGT	1 cut(s)	200
AjiI	CACGTC	1 cut(s)	203
AjuI	GAANNNNNNNTTGG	2 cut(s)	248, 280
AluBI	AGCT	4 cut(s)	74, 137, 514, 694
AluI	AGCT	4 cut(s)	74, 137, 514, 694
Alw21I	GWGCWC	1 cut(s)	516
Alw26I	GTCTC	3 cut(s)	20, 153, 209
Aor13HI	TCCGGA	1 cut(s)	18
AoxI	GGCC	5 cut(s)	53, 259, 417, 597, 603
ApeKI	GCWGC	6 cut(s)	94, 97, 134, 299, 410, 430
ApoI	RAATTY	1 cut(s)	347
ArsI	GACNNNNNNTTYG	2 cut(s)	23, 55
AsiSI	GCGATCGC	1 cut(s)	654
AspLEI	GCGC	1 cut(s)	650
AspS9I	GGNCC	4 cut(s)	401, 418, 499, 625
AsuHPI	GGTGA	2 cut(s)	545, 557
AvaII	GGWCC	3 cut(s)	401, 499, 625
BanII	GRGCYC	3 cut(s)	108, 315, 516
Bbv12I	GWGCWC	1 cut(s)	516
BbvI	GCAGC	6 cut(s)	81, 84, 146, 311, 417, 422
BccI	CCATC	2 cut(s)	376, 581
BceAI	ACGGC	3 cut(s)	274, 584, 661
BclI	TGATCA	1 cut(s)	469
BcoDI	GTCTC	3 cut(s)	20, 153, 209
BfaI	CTAG	3 cut(s)	6, 152, 324
BfmI	CTRYAG	1 cut(s)	98
BfuAI	ACCTGC	1 cut(s)	179
BisI	GCNGC	9 cut(s)	95, 98, 135, 300, 411, 414, 417, 431, 606
BlsI	GCNGC	9 cut(s)	96, 99, 136, 301, 412, 415, 418, 432, 607
Bme18I	GGWCC	3 cut(s)	401, 499, 625
BmgBI	CACGTC	1 cut(s)	203
BmgT120I	GGNCC	4 cut(s)	401, 418, 499, 625
BmiI	GGNNCC	4 cut(s)	286, 295, 314, 526
BmsI	GCATC	3 cut(s)	106, 170, 658
Bpu10I	CCTNAGC	1 cut(s)	215
BsaBI	GATNNNNATC	1 cut(s)	589
BsaJI	CCNNGG	3 cut(s)	316, 594, 600
BsaWI	WCCGGW	4 cut(s)	18, 277, 287, 618
Bsc4I	CCNNNNNNNGG	3 cut(s)	261, 309, 579
Bse118I	RCCGGY	3 cut(s)	55, 261, 302
Bse8I	GATNNNNATC	1 cut(s)	589
BseAI	TCCGGA	1 cut(s)	18
BseDI	CCNNGG	3 cut(s)	316, 594, 600
BseGI	GGATG	1 cut(s)	484
BseJI	GATNNNNATC	1 cut(s)	589
BseLI	CCNNNNNNNGG	3 cut(s)	261, 309, 579
BseRI	GAGGAG	3 cut(s)	570, 573, 647
BseX3I	CGGCCG	2 cut(s)	259, 597
BseXI	GCAGC	6 cut(s)	81, 84, 146, 311, 417, 422
BsgI	GTGCAG	1 cut(s)	213
Bsh1236I	CGCG	3 cut(s)	485, 630, 650
Bsh1285I	CGRYCG	4 cut(s)	262, 282, 600, 654
BshFI	GGCC	5 cut(s)	55, 261, 419, 599, 605
BsiEI	CGRYCG	4 cut(s)	262, 282, 600, 654
BsiHKAI	GWGCWC	1 cut(s)	516
BsiSI	CCGG	8 cut(s)	19, 56, 262, 278, 288, 303, 609, 619
BslFI	GGGAC	1 cut(s)	334
BslI	CCNNNNNNNGG	3 cut(s)	261, 309, 579
BsmAI	GTCTC	3 cut(s)	20, 153, 209
BsmBI	CGTCTC	1 cut(s)	209
BsmFI	GGGAC	1 cut(s)	334
BsnI	GGCC	5 cut(s)	55, 261, 419, 599, 605
Bsp1286I	GDGCHC	3 cut(s)	108, 315, 516
Bsp13I	TCCGGA	1 cut(s)	18
Bsp143I	GATC	3 cut(s)	469, 584, 651
BspANI	GGCC	5 cut(s)	55, 261, 419, 599, 605
BspEI	TCCGGA	1 cut(s)	18
BspFNI	CGCG	3 cut(s)	485, 630, 650
BspLI	GGNNCC	4 cut(s)	286, 295, 314, 526
BspMAI	CTGCAG	1 cut(s)	102
BspMI	ACCTGC	1 cut(s)	179
BsrBI	CCGCTC	1 cut(s)	437
BsrFI	RCCGGY	3 cut(s)	55, 261, 302
BssAI	RCCGGY	3 cut(s)	55, 261, 302
BssECI	CCNNGG	3 cut(s)	316, 594, 600
BssMI	GATC	3 cut(s)	469, 584, 651
BssT1I	CCWWGG	1 cut(s)	316
Bst4CI	ACNGT	1 cut(s)	539
BstC8I	GCNNGC	7 cut(s)	57, 132, 196, 223, 435, 529, 658
BstDEI	CTNAG	2 cut(s)	75, 215
BstDSI	CCRYGG	1 cut(s)	600
BstF5I	GGATG	1 cut(s)	484
BstFNI	CGCG	3 cut(s)	485, 630, 650
BstHHI	GCGC	1 cut(s)	650
BstKTI	GATC	3 cut(s)	472, 587, 654
BstMAI	GTCTC	3 cut(s)	20, 153, 209
BstMBI	GATC	3 cut(s)	469, 584, 651
BstMCI	CGRYCG	4 cut(s)	262, 282, 600, 654
BstMWI	GCNNNNNNNGC	5 cut(s)	103, 231, 350, 416, 605
BstSFI	CTRYAG	1 cut(s)	98
BstUI	CGCG	3 cut(s)	485, 630, 650
BstV1I	GCAGC	6 cut(s)	81, 84, 146, 311, 417, 422
BstZI	CGGCCG	2 cut(s)	259, 597
BsuRI	GGCC	5 cut(s)	55, 261, 419, 599, 605
BtgI	CCRYGG	1 cut(s)	600
BtrI	CACGTC	1 cut(s)	203
BtsCI	GGATG	1 cut(s)	484
BtsIMutI	CAGTG	1 cut(s)	465
BveI	ACCTGC	1 cut(s)	179
Cac8I	GCNNGC	7 cut(s)	57, 132, 196, 223, 435, 529, 658
CfoI	GCGC	1 cut(s)	650
Cfr10I	RCCGGY	3 cut(s)	55, 261, 302
Cfr13I	GGNCC	4 cut(s)	401, 418, 499, 625
CseI	GACGC	1 cut(s)	474
Csp6I	GTAC	2 cut(s)	568, 616
CviAII	CATG	1 cut(s)	676
CviQI	GTAC	2 cut(s)	568, 616
DdeI	CTNAG	2 cut(s)	75, 215
DpnI	GATC	3 cut(s)	471, 586, 653
DpnII	GATC	3 cut(s)	469, 584, 651
EaeI	YGGCCR	4 cut(s)	53, 259, 597, 603
EagI	CGGCCG	2 cut(s)	259, 597
EciI	GGCGGA	2 cut(s)	359, 401
Ecl136II	GAGCTC	1 cut(s)	514
EclXI	CGGCCG	2 cut(s)	259, 597
Eco130I	CCWWGG	1 cut(s)	316
Eco24I	GRGCYC	3 cut(s)	108, 315, 516
Eco47I	GGWCC	3 cut(s)	401, 499, 625
Eco52I	CGGCCG	2 cut(s)	259, 597
Eco53kI	GAGCTC	1 cut(s)	514
EcoICRI	GAGCTC	1 cut(s)	514
EcoT14I	CCWWGG	1 cut(s)	316
EcoT38I	GRGCYC	3 cut(s)	108, 315, 516
ErhI	CCWWGG	1 cut(s)	316
Esp3I	CGTCTC	1 cut(s)	209
FaeI	CATG	1 cut(s)	679
FaiI	YATR	2 cut(s)	337, 677
FaqI	GGGAC	1 cut(s)	334
FatI	CATG	1 cut(s)	675
FauI	CCCGC	1 cut(s)	82
FbaI	TGATCA	1 cut(s)	469
Fnu4HI	GCNGC	9 cut(s)	95, 98, 135, 300, 411, 414, 417, 431, 606
FokI	GGATG	1 cut(s)	491
FriOI	GRGCYC	3 cut(s)	108, 315, 516
Fsp4HI	GCNGC	9 cut(s)	95, 98, 135, 300, 411, 414, 417, 431, 606
FspBI	CTAG	3 cut(s)	6, 152, 324
GlaI	GCGC	1 cut(s)	649
GluI	GCNGC	9 cut(s)	95, 98, 135, 300, 411, 414, 417, 431, 606
HaeIII	GGCC	5 cut(s)	55, 261, 419, 599, 605
HapII	CCGG	8 cut(s)	19, 56, 262, 278, 288, 303, 609, 619
HgaI	GACGC	1 cut(s)	474
HhaI	GCGC	1 cut(s)	650
Hin1II	CATG	1 cut(s)	679
Hin6I	GCGC	1 cut(s)	648
HinP1I	GCGC	1 cut(s)	648
HinfI	GANTC	2 cut(s)	161, 274
HpaII	CCGG	8 cut(s)	19, 56, 262, 278, 288, 303, 609, 619
HphI	GGTGA	2 cut(s)	545, 557
Hpy166II	GTNNAC	2 cut(s)	570, 687
Hpy188I	TCNGA	4 cut(s)	43, 71, 474, 508
Hpy188III	TCNNGA	3 cut(s)	19, 580, 665
Hpy8I	GTNNAC	2 cut(s)	570, 687
Hpy99I	CGWCG	3 cut(s)	490, 524, 647
HpyAV	CCTTC	4 cut(s)	469, 545, 616, 671
HpyCH4III	ACNGT	1 cut(s)	539
HpyCH4IV	ACGT	1 cut(s)	202
HpyCH4V	TGCA	3 cut(s)	100, 194, 410
HpyF10VI	GCNNNNNNNGC	5 cut(s)	103, 231, 350, 416, 605
HpyF3I	CTNAG	2 cut(s)	75, 215
HpySE526I	ACGT	1 cut(s)	202
Hsp92II	CATG	1 cut(s)	679
HspAI	GCGC	1 cut(s)	648
Kpn2I	TCCGGA	1 cut(s)	18
KroI	GCCGGC	1 cut(s)	55
KroNI	GCCGGC	1 cut(s)	57
Ksp22I	TGATCA	1 cut(s)	469
Kzo9I	GATC	3 cut(s)	469, 584, 651
LmnI	GCTCC	4 cut(s)	71, 318, 524, 639
Lsp1109I	GCAGC	6 cut(s)	81, 84, 146, 311, 417, 422
LweI	GCATC	3 cut(s)	106, 170, 658
MaeI	CTAG	3 cut(s)	6, 152, 324
MaeII	ACGT	1 cut(s)	202
MaeIII	GTNAC	1 cut(s)	533
MalI	GATC	3 cut(s)	471, 586, 653
MbiI	CCGCTC	1 cut(s)	437
MboI	GATC	3 cut(s)	469, 584, 651
MboII	GAAGA	2 cut(s)	502, 560
MhlI	GDGCHC	3 cut(s)	108, 315, 516
MluCI	AATT	2 cut(s)	347, 697
MlyI	GAGTC	1 cut(s)	155
MmeI	TCCRAC	3 cut(s)	21, 49, 279
MroI	TCCGGA	1 cut(s)	18
MroNI	GCCGGC	1 cut(s)	55
MspA1I	CMGCKG	3 cut(s)	413, 531, 694
MspI	CCGG	8 cut(s)	19, 56, 262, 278, 288, 303, 609, 619
MvnI	CGCG	3 cut(s)	485, 630, 650
MwoI	GCNNNNNNNGC	5 cut(s)	103, 231, 350, 416, 605
NaeI	GCCGGC	1 cut(s)	57
NdeII	GATC	3 cut(s)	469, 584, 651
NgoMIV	GCCGGC	1 cut(s)	55
NlaIII	CATG	1 cut(s)	679
NlaIV	GGNNCC	4 cut(s)	286, 295, 314, 526
NmeAIII	GCCGAG	6 cut(s)	89, 100, 121, 143, 164, 575
NmuCI	GTSAC	1 cut(s)	533
PaqCI	CACCTGC	1 cut(s)	179
PdiI	GCCGGC	1 cut(s)	57
PfeI	GAWTC	1 cut(s)	274
PkrI	GCNGC	9 cut(s)	96, 99, 136, 301, 412, 415, 418, 432, 607
Ple19I	CGATCG	1 cut(s)	654
PleI	GAGTC	1 cut(s)	155
PpsI	GAGTC	1 cut(s)	155
Psp124BI	GAGCTC	1 cut(s)	516
PspN4I	GGNNCC	4 cut(s)	286, 295, 314, 526
PspPI	GGNCC	4 cut(s)	401, 418, 499, 625
PstI	CTGCAG	1 cut(s)	102
PvuI	CGATCG	1 cut(s)	654
PvuII	CAGCTG	1 cut(s)	694
RgaI	GCGATCGC	1 cut(s)	654
RsaI	GTAC	2 cut(s)	569, 617
RsaNI	GTAC	2 cut(s)	568, 616
SacI	GAGCTC	1 cut(s)	516
SatI	GCNGC	9 cut(s)	95, 98, 135, 300, 411, 414, 417, 431, 606
Sau3AI	GATC	3 cut(s)	469, 584, 651
Sau96I	GGNCC	4 cut(s)	401, 418, 499, 625
SchI	GAGTC	1 cut(s)	155
SduI	GDGCHC	3 cut(s)	108, 315, 516
SfaAI	GCGATCGC	1 cut(s)	654
SfaNI	GCATC	3 cut(s)	106, 170, 658
SfcI	CTRYAG	1 cut(s)	98
SgfI	GCGATCGC	1 cut(s)	654
SinI	GGWCC	3 cut(s)	401, 499, 625
Sse9I	AATT	2 cut(s)	347, 697
SspMI	CTAG	3 cut(s)	6, 152, 324
SstI	GAGCTC	1 cut(s)	516
StyI	CCWWGG	1 cut(s)	316
TaaI	ACNGT	1 cut(s)	539
TaiI	ACGT	1 cut(s)	205
TaqI	TCGA	4 cut(s)	456, 488, 587, 666
TasI	AATT	2 cut(s)	347, 697
TauI	GCSGC	3 cut(s)	416, 419, 608
TfiI	GAWTC	1 cut(s)	274
TscAI	CASTG	1 cut(s)	472
TseFI	GTSAC	1 cut(s)	533
TseI	GCWGC	6 cut(s)	94, 97, 134, 299, 410, 430
Tsp45I	GTSAC	1 cut(s)	533
TspGWI	ACGGA	1 cut(s)	537
TspRI	CASTG	1 cut(s)	472
VpaK11BI	GGWCC	3 cut(s)	401, 499, 625
XapI	RAATTY	1 cut(s)	347
XspI	CTAG	3 cut(s)	6, 152, 324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.