Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040530.1

Orthogroup ID

OG0001994

Physical Location & Seq

Genomic Coordinates Reverse (-)

332 .. 615

Gene Structure 284 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040530.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 284 bp

tcagggtgaaaaccggggcgggtcctgtcaacagtggtggtgaagaaggaggaggaggttcgtacgccatcatcaggagatcgaaatcctcggccgtggcagccggagagtaccagaaggaccgcgaggagtggaacgacggcgcgattgcttgccttcttgatgcttacatggacaagttcacgcagctgaattggggaaatctgagaggccgggattgggaggaggtagccgtgatcgtgagccagatgtctgaggcaaaccaagagcgtcgagcagtgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_kinase Myb_DNA-bind_4

Protein Analysis

93

Amino Acids

10.14

Weight (kDa)

5.12

Isoelectric Point (pI)

60.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10030 AT3G10030
fragaria_vesca	FvH4_6g17490 FvH4_6g17490 FvH4_6g17490 FvH4_6g17490
malus_domestica	MD12G1097000.v1.1 MD14G1094100.v1.1
prunus_persica	Prupe.7G120600_v2.0.a1 Prupe.7G120600_v2.0.a1 Prupe.7G120600_v2.0.a1 Prupe.7G120600_v2.0.a1 Prupe.7G120600_v2.0.a1 Prupe.7G120600_v2.0.a1
pyrus_communis	pycom14g09190
rosa_chinensis	RchiOBHm_Chr2g0173511 RchiOBHm_Chr3g0471731 RchiOBHm_Chr5g0071181
rosa_laevigata	RLG00000015608 RLG00000024138 RLG00000024278 RLG00000036093
rosa_multiflora	Rmu_sc0002476.1_g000019 Rmu_sc0004577.1_g000005 Rmu_sc0004577.1_g000006 Rmu_sc0013806.1_g000003 Rmu_sc0040530.1_g000001 Rmu_sc0041385.1_g000001 Rmu_ssc0000126.1_g000037 Rmu_ssc0000126.1_g000038
rosa_roxburghii	Rroxscaffold_3G00223840 Rroxscaffold_3G00265600 Rroxscaffold_6G00393240 Rroxscaffold_6G00409600
rosa_rugosa	Rorug03G0119300 Rorug03G0119400
rosa_samantha	Rh1CG168000 Rh2AG649600 Rh2DG555500 Rh2DG675400 Rh3BG196400 Rh3DG178500 Rh4BG099200 Rh4BG396300
rosa_wichuraiana	Rw0G009050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	125, 145
AciI	CCGC	2 cut(s)	19, 123
AcoI	YGGCCR	1 cut(s)	92
AfaI	GTAC	2 cut(s)	64, 112
AfiI	CCNNNNNNNGG	2 cut(s)	74, 219
AluBI	AGCT	1 cut(s)	189
AluI	AGCT	1 cut(s)	189
AoxI	GGCC	2 cut(s)	92, 210
ApeKI	GCWGC	2 cut(s)	100, 186
AspLEI	GCGC	1 cut(s)	145
AspS9I	GGNCC	2 cut(s)	22, 120
AsuC2I	CCSGG	2 cut(s)	15, 214
AsuHPI	GGTGA	2 cut(s)	18, 52
AvaII	GGWCC	2 cut(s)	22, 120
BbvI	GCAGC	2 cut(s)	112, 198
BccI	CCATC	1 cut(s)	76
BceAI	ACGGC	3 cut(s)	79, 156, 217
BcnI	CCSGG	2 cut(s)	15, 214
BisI	GCNGC	2 cut(s)	101, 187
BlsI	GCNGC	2 cut(s)	102, 188
Bme1390I	CCNGG	2 cut(s)	15, 214
Bme18I	GGWCC	2 cut(s)	22, 120
BmgT120I	GGNCC	2 cut(s)	22, 120
BmiI	GGNNCC	1 cut(s)	23
BmrFI	CCNGG	2 cut(s)	15, 214
BmsI	GCATC	1 cut(s)	153
BpuMI	CCSGG	2 cut(s)	15, 214
BsaBI	GATNNNNATC	1 cut(s)	84
BsaJI	CCNNGG	3 cut(s)	14, 89, 95
Bsc4I	CCNNNNNNNGG	2 cut(s)	74, 219
Bse8I	GATNNNNATC	1 cut(s)	84
BseDI	CCNNGG	3 cut(s)	14, 89, 95
BseJI	GATNNNNATC	1 cut(s)	84
BseLI	CCNNNNNNNGG	2 cut(s)	74, 219
BseMII	CTCAG	2 cut(s)	196, 245
BseRI	GAGGAG	4 cut(s)	65, 68, 142, 238
BseX3I	CGGCCG	1 cut(s)	92
BseXI	GCAGC	2 cut(s)	112, 198
Bsh1236I	CGCG	2 cut(s)	125, 145
Bsh1285I	CGRYCG	1 cut(s)	95
BshFI	GGCC	2 cut(s)	94, 212
BsiEI	CGRYCG	1 cut(s)	95
BsiSI	CCGG	3 cut(s)	14, 104, 213
BsiWI	CGTACG	1 cut(s)	62
BslI	CCNNNNNNNGG	2 cut(s)	74, 219
BsnI	GGCC	2 cut(s)	94, 212
Bsp143I	GATC	2 cut(s)	79, 236
BspACI	CCGC	2 cut(s)	19, 123
BspANI	GGCC	2 cut(s)	94, 212
BspCNI	CTCAG	2 cut(s)	197, 246
BspFNI	CGCG	2 cut(s)	125, 145
BspLI	GGNNCC	1 cut(s)	23
BssECI	CCNNGG	3 cut(s)	14, 89, 95
BssMI	GATC	2 cut(s)	79, 236
Bst4CI	ACNGT	1 cut(s)	34
BstC8I	GCNNGC	1 cut(s)	153
BstDEI	CTNAG	2 cut(s)	205, 254
BstDSI	CCRYGG	1 cut(s)	95
BstFNI	CGCG	2 cut(s)	125, 145
BstHHI	GCGC	1 cut(s)	145
BstKTI	GATC	2 cut(s)	82, 239
BstMBI	GATC	2 cut(s)	79, 236
BstMCI	CGRYCG	1 cut(s)	95
BstMWI	GCNNNNNNNGC	1 cut(s)	100
BstSCI	CCNGG	2 cut(s)	13, 212
BstUI	CGCG	2 cut(s)	125, 145
BstV1I	GCAGC	2 cut(s)	112, 198
BstZI	CGGCCG	1 cut(s)	92
BsuRI	GGCC	2 cut(s)	94, 212
BtgI	CCRYGG	1 cut(s)	95
BtsI	GCAGTG	1 cut(s)	284
BtsIMutI	CAGTG	2 cut(s)	39, 284
Cac8I	GCNNGC	1 cut(s)	153
CfoI	GCGC	1 cut(s)	145
Cfr13I	GGNCC	2 cut(s)	22, 120
CseI	GACGC	1 cut(s)	259
Csp6I	GTAC	2 cut(s)	63, 111
CspCI	CAANNNNNGTGG	2 cut(s)	18, 53
CviAII	CATG	1 cut(s)	171
CviJI	RGCY	6 cut(s)	94, 103, 189, 212, 232, 245
CviKI_1	RGCY	6 cut(s)	94, 103, 189, 212, 232, 245
CviQI	GTAC	2 cut(s)	63, 111
DdeI	CTNAG	2 cut(s)	205, 254
DpnI	GATC	2 cut(s)	81, 238
DpnII	GATC	2 cut(s)	79, 236
EaeI	YGGCCR	1 cut(s)	92
EagI	CGGCCG	1 cut(s)	92
EclXI	CGGCCG	1 cut(s)	92
Eco47I	GGWCC	2 cut(s)	22, 120
Eco52I	CGGCCG	1 cut(s)	92
EcoO109I	RGGNCCY	1 cut(s)	22
FaeI	CATG	1 cut(s)	174
FaiI	YATR	1 cut(s)	172
FatI	CATG	1 cut(s)	170
FauI	CCCGC	1 cut(s)	12
Fnu4HI	GCNGC	2 cut(s)	101, 187
Fsp4HI	GCNGC	2 cut(s)	101, 187
GlaI	GCGC	1 cut(s)	144
GluI	GCNGC	2 cut(s)	101, 187
HaeIII	GGCC	2 cut(s)	94, 212
HapII	CCGG	3 cut(s)	14, 104, 213
HgaI	GACGC	1 cut(s)	259
HhaI	GCGC	1 cut(s)	145
Hin1II	CATG	1 cut(s)	174
Hin6I	GCGC	1 cut(s)	143
HinP1I	GCGC	1 cut(s)	143
HincII	GTYRAC	1 cut(s)	30
HindII	GTYRAC	1 cut(s)	30
HpaII	CCGG	3 cut(s)	14, 104, 213
HphI	GGTGA	2 cut(s)	18, 52
Hpy166II	GTNNAC	2 cut(s)	30, 182
Hpy188I	TCNGA	2 cut(s)	206, 255
Hpy188III	TCNNGA	3 cut(s)	75, 160, 240
Hpy8I	GTNNAC	2 cut(s)	30, 182
Hpy99I	CGWCG	2 cut(s)	142, 275
HpyAV	CCTTC	3 cut(s)	40, 111, 166
HpyCH4III	ACNGT	1 cut(s)	34
HpyF10VI	GCNNNNNNNGC	1 cut(s)	100
HpyF3I	CTNAG	2 cut(s)	205, 254
Hsp92II	CATG	1 cut(s)	174
HspAI	GCGC	1 cut(s)	143
Kzo9I	GATC	2 cut(s)	79, 236
LpnPI	CCDG	7 cut(s)	27, 38, 60, 117, 127, 226, 259
Lsp1109I	GCAGC	2 cut(s)	112, 198
LweI	GCATC	1 cut(s)	153
MalI	GATC	2 cut(s)	81, 238
MboI	GATC	2 cut(s)	79, 236
MboII	GAAGA	1 cut(s)	55
MluCI	AATT	1 cut(s)	192
MnlI	CCTC	9 cut(s)	43, 46, 49, 99, 120, 202, 216, 219, 249
MspA1I	CMGCKG	1 cut(s)	189
MspI	CCGG	3 cut(s)	14, 104, 213
MspR9I	CCNGG	2 cut(s)	15, 214
MvnI	CGCG	2 cut(s)	125, 145
MwoI	GCNNNNNNNGC	1 cut(s)	100
NciI	CCSGG	2 cut(s)	15, 214
NdeII	GATC	2 cut(s)	79, 236
NlaIII	CATG	1 cut(s)	174
NlaIV	GGNNCC	1 cut(s)	23
NmeAIII	GCCGAG	1 cut(s)	70
Pfl23II	CGTACG	1 cut(s)	62
PkrI	GCNGC	2 cut(s)	102, 188
PpuMI	RGGWCCY	1 cut(s)	22
Psp5II	RGGWCCY	1 cut(s)	22
PspLI	CGTACG	1 cut(s)	62
PspN4I	GGNNCC	1 cut(s)	23
PspPI	GGNCC	2 cut(s)	22, 120
PspPPI	RGGWCCY	1 cut(s)	22
PvuII	CAGCTG	1 cut(s)	189
RsaI	GTAC	2 cut(s)	64, 112
RsaNI	GTAC	2 cut(s)	63, 111
SatI	GCNGC	2 cut(s)	101, 187
Sau3AI	GATC	2 cut(s)	79, 236
Sau96I	GGNCC	2 cut(s)	22, 120
ScrFI	CCNGG	2 cut(s)	15, 214
SetI	ASST	3 cut(s)	60, 191, 230
SfaNI	GCATC	1 cut(s)	153
SinI	GGWCC	2 cut(s)	22, 120
Sse9I	AATT	1 cut(s)	192
SsiI	CCGC	2 cut(s)	19, 123
StyD4I	CCNGG	2 cut(s)	13, 212
TaaI	ACNGT	1 cut(s)	34
TaqI	TCGA	2 cut(s)	82, 273
TasI	AATT	1 cut(s)	192
TscAI	CASTG	2 cut(s)	39, 284
TseI	GCWGC	2 cut(s)	100, 186
TspRI	CASTG	2 cut(s)	39, 284
VpaK11BI	GGWCC	2 cut(s)	22, 120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.