RchiOBHm_Chr2g0173511
MYB Family

Alcohol dehydrogenase transcription factor Myb/SANT-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001994
Physical Location & Seq
Forward (+)
86477344 .. 86478005
662 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54073

Sequence Viewer

Length: 318 bp
ATGACCAATTCTGGAAATTCACCGAGTCATTGGCCTTGGTTCAAGATAATGGAGCAGATCGTCGACAATTCGCTTCCGGTGAAGGCCACCTCTGATGATGACAGAGGCATTACTTCCTCCGGTGCCACGCCTCAGAAATCAAAGAGGCTTAAATGGCGAAGAGTGGTGTTCAAAGTCAGTGGTGCTGCTCTAGCTGGCACTGCTGCTAACAACATTGACCCAAAGGTTATAACAATGCTGATTGCGAGAGAAGTTGCAATGGCCTACCGCAGTGGGGTGGAGGTGGCAATTGTTGTTGGTGGTCGCAACTTTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AA_kinase Myb_DNA-bind_4

Protein Analysis

105

Amino Acids

11.33

Weight (kDa)

10.2

Isoelectric Point (pI)

24.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 230
AccB1I GGYRCC 1 cut(s) 122
AccI GTMKAC 1 cut(s) 63
AciI CCGC 1 cut(s) 268
AcsI RAATTY 1 cut(s) 16
AfiI CCNNNNNNNGG 1 cut(s) 274
AgsI TTSAA 2 cut(s) 43, 172
AluBI AGCT 1 cut(s) 194
AluI AGCT 1 cut(s) 194
AoxI GGCC 3 cut(s) 32, 84, 261
ApeKI GCWGC 2 cut(s) 185, 203
ApoI RAATTY 1 cut(s) 16
AsuHPI GGTGA 2 cut(s) 12, 91
BanI GGYRCC 1 cut(s) 122
BbvI GCAGC 2 cut(s) 172, 190
BfaI CTAG 1 cut(s) 191
BisI GCNGC 2 cut(s) 186, 204
BlsI GCNGC 2 cut(s) 187, 205
BmiI GGNNCC 1 cut(s) 124
BsaJI CCNNGG 1 cut(s) 35
BsaWI WCCGGW 2 cut(s) 76, 119
Bsc4I CCNNNNNNNGG 1 cut(s) 274
Bse3DI GCAATG 1 cut(s) 264
BseDI CCNNGG 1 cut(s) 35
BseLI CCNNNNNNNGG 1 cut(s) 274
BseMI GCAATG 1 cut(s) 264
BseMII CTCAG 1 cut(s) 146
BseXI GCAGC 2 cut(s) 172, 190
BshFI GGCC 3 cut(s) 34, 86, 263
BshNI GGYRCC 1 cut(s) 122
BsiSI CCGG 2 cut(s) 77, 120
BslI CCNNNNNNNGG 1 cut(s) 274
BsnI GGCC 3 cut(s) 34, 86, 263
Bsp143I GATC 1 cut(s) 57
BspACI CCGC 1 cut(s) 268
BspANI GGCC 3 cut(s) 34, 86, 263
BspCNI CTCAG 1 cut(s) 145
BspLI GGNNCC 1 cut(s) 124
BspT107I GGYRCC 1 cut(s) 122
BsrDI GCAATG 1 cut(s) 264
BssECI CCNNGG 1 cut(s) 35
BssMI GATC 1 cut(s) 57
BssT1I CCWWGG 1 cut(s) 35
Bst6I CTCTTC 1 cut(s) 154
BstC8I GCNNGC 1 cut(s) 196
BstDEI CTNAG 1 cut(s) 132
BstKTI GATC 1 cut(s) 60
BstMBI GATC 1 cut(s) 57
BstMWI GCNNNNNNNGC 4 cut(s) 154, 191, 200, 312
BstV1I GCAGC 2 cut(s) 172, 190
BsuRI GGCC 3 cut(s) 34, 86, 263
BtsI GCAGTG 2 cut(s) 198, 277
BtsIMutI CAGTG 3 cut(s) 184, 198, 277
Cac8I GCNNGC 1 cut(s) 196
CspCI CAANNNNNGTGG 2 cut(s) 160, 195
CviJI RGCY 6 cut(s) 34, 86, 148, 194, 263, 315
CviKI_1 RGCY 6 cut(s) 34, 86, 148, 194, 263, 315
DdeI CTNAG 1 cut(s) 132
DpnI GATC 1 cut(s) 59
DpnII GATC 1 cut(s) 57
Eam1104I CTCTTC 1 cut(s) 154
EarI CTCTTC 1 cut(s) 154
Eco130I CCWWGG 1 cut(s) 35
EcoT14I CCWWGG 1 cut(s) 35
ErhI CCWWGG 1 cut(s) 35
FaiI YATR 1 cut(s) 230
FblI GTMKAC 1 cut(s) 63
Fnu4HI GCNGC 2 cut(s) 186, 204
Fsp4HI GCNGC 2 cut(s) 186, 204
FspBI CTAG 1 cut(s) 191
GluI GCNGC 2 cut(s) 186, 204
HaeIII GGCC 3 cut(s) 34, 86, 263
HapII CCGG 2 cut(s) 77, 120
HincII GTYRAC 1 cut(s) 64
HindII GTYRAC 1 cut(s) 64
HinfI GANTC 1 cut(s) 25
HpaII CCGG 2 cut(s) 77, 120
HphI GGTGA 2 cut(s) 12, 91
Hpy166II GTNNAC 1 cut(s) 64
Hpy188I TCNGA 2 cut(s) 94, 135
Hpy188III TCNNGA 2 cut(s) 12, 43
Hpy8I GTNNAC 1 cut(s) 64
Hpy99I CGWCG 1 cut(s) 65
HpyAV CCTTC 1 cut(s) 76
HpyCH4V TGCA 1 cut(s) 257
HpyF10VI GCNNNNNNNGC 4 cut(s) 154, 191, 200, 312
HpyF3I CTNAG 1 cut(s) 132
Kzo9I GATC 1 cut(s) 57
LmnI GCTCC 1 cut(s) 52
LpnPI CCDG 3 cut(s) 90, 133, 180
Lsp1109I GCAGC 2 cut(s) 172, 190
MaeI CTAG 1 cut(s) 191
MalI GATC 1 cut(s) 59
MboI GATC 1 cut(s) 57
MboII GAAGA 1 cut(s) 171
MfeI CAATTG 1 cut(s) 288
MluCI AATT 4 cut(s) 7, 16, 67, 288
MlyI GAGTC 1 cut(s) 34
MnlI CCTC 6 cut(s) 98, 100, 127, 138, 141, 274
MseI TTAA 1 cut(s) 150
MspI CCGG 2 cut(s) 77, 120
MunI CAATTG 1 cut(s) 288
MwoI GCNNNNNNNGC 4 cut(s) 154, 191, 200, 312
NdeII GATC 1 cut(s) 57
NlaIV GGNNCC 1 cut(s) 124
PkrI GCNGC 2 cut(s) 187, 205
PleI GAGTC 1 cut(s) 33
PpsI GAGTC 1 cut(s) 33
PsiI TTATAA 1 cut(s) 230
PspN4I GGNNCC 1 cut(s) 124
SalI GTCGAC 1 cut(s) 62
SaqAI TTAA 1 cut(s) 150
SatI GCNGC 2 cut(s) 186, 204
Sau3AI GATC 1 cut(s) 57
SchI GAGTC 1 cut(s) 34
SetI ASST 4 cut(s) 92, 196, 228, 285
Sse9I AATT 4 cut(s) 7, 16, 67, 288
SsiI CCGC 1 cut(s) 268
SspMI CTAG 1 cut(s) 191
StyI CCWWGG 1 cut(s) 35
TaqI TCGA 1 cut(s) 63
TasI AATT 4 cut(s) 7, 16, 67, 288
Tru1I TTAA 1 cut(s) 150
Tru9I TTAA 1 cut(s) 150
TscAI CASTG 3 cut(s) 184, 205, 277
TseI GCWGC 2 cut(s) 185, 203
TspRI CASTG 3 cut(s) 184, 205, 277
XapI RAATTY 1 cut(s) 16
XmiI GTMKAC 1 cut(s) 63
XspI CTAG 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.