Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000126.1

Orthogroup ID

OG0001994

Physical Location & Seq

Genomic Coordinates Reverse (-)

157331 .. 158064

Gene Structure 734 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000126.1_g000037.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

atggagcagttcgtcgacaattcgcttccggcgaaggccacctctgatgatgacagaggcattacttcctccggtgccacgcctcagaaatcaaagagtacagttggtcaccctctgtttgtttttggcagaaatgcaagtacaattactagtcctgtaactcagataaataagcagccgaaaattagtcttaaatggcgaagagtggtgttcaaagtcagtggtgctgctctagctggcactgctgctaacaacattgacccaaagataacaatgctgattgagagagaagttgcaatggcctgctgcagtggggtggaggtaatgatgtggcaattgttgttggcggtcgcaactttagctgatgggtgtggcggatttgggggtttgggcggtggggtcggagtggagggtcatggagattgcgatggcggcgagtatgacggccatggtggagtagagtatggcgtgccgcgggtgcagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_kinase Myb_DNA-bind_4

Protein Analysis

161

Amino Acids

16.7

Weight (kDa)

5.87

Isoelectric Point (pI)

32.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10030 AT3G10030
fragaria_vesca	FvH4_6g17490 FvH4_6g17490 FvH4_6g17490 FvH4_6g17490
malus_domestica	MD12G1097000.v1.1 MD14G1094100.v1.1
prunus_persica	Prupe.7G120600_v2.0.a1 Prupe.7G120600_v2.0.a1 Prupe.7G120600_v2.0.a1 Prupe.7G120600_v2.0.a1 Prupe.7G120600_v2.0.a1 Prupe.7G120600_v2.0.a1
pyrus_communis	pycom14g09190
rosa_chinensis	RchiOBHm_Chr2g0173511 RchiOBHm_Chr3g0471731 RchiOBHm_Chr5g0071181
rosa_laevigata	RLG00000015608 RLG00000024138 RLG00000024278 RLG00000036093
rosa_multiflora	Rmu_sc0002476.1_g000019 Rmu_sc0004577.1_g000005 Rmu_sc0004577.1_g000006 Rmu_sc0013806.1_g000003 Rmu_sc0040530.1_g000001 Rmu_sc0041385.1_g000001 Rmu_ssc0000126.1_g000037 Rmu_ssc0000126.1_g000038
rosa_roxburghii	Rroxscaffold_3G00223840 Rroxscaffold_3G00265600 Rroxscaffold_6G00393240 Rroxscaffold_6G00409600
rosa_rugosa	Rorug03G0119300 Rorug03G0119400
rosa_samantha	Rh1CG168000 Rh2AG649600 Rh2DG555500 Rh2DG675400 Rh3BG196400 Rh3DG178500 Rh4BG099200 Rh4BG396300
rosa_wichuraiana	Rw0G009050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	74
AccI	GTMKAC	1 cut(s)	15
AccII	CGCG	1 cut(s)	475
AciI	CCGC	6 cut(s)	347, 375, 393, 432, 473, 475
AcoI	YGGCCR	1 cut(s)	445
AfaI	GTAC	2 cut(s)	100, 142
AgsI	TTSAA	1 cut(s)	214
AhlI	ACTAGT	1 cut(s)	149
AluBI	AGCT	2 cut(s)	236, 362
AluI	AGCT	2 cut(s)	236, 362
AoxI	GGCC	3 cut(s)	36, 300, 445
ApeKI	GCWGC	4 cut(s)	175, 227, 245, 306
AsuHPI	GGTGA	1 cut(s)	101
BanI	GGYRCC	1 cut(s)	74
BbvI	GCAGC	4 cut(s)	187, 214, 232, 293
BccI	CCATC	2 cut(s)	359, 422
BceAI	ACGGC	1 cut(s)	460
BcuI	ACTAGT	1 cut(s)	149
BfaI	CTAG	2 cut(s)	150, 233
BfmI	CTRYAG	1 cut(s)	307
BisI	GCNGC	6 cut(s)	176, 228, 246, 307, 433, 473
BlsI	GCNGC	6 cut(s)	177, 229, 247, 308, 434, 474
BmiI	GGNNCC	1 cut(s)	76
BsaJI	CCNNGG	2 cut(s)	448, 473
BsaWI	WCCGGW	1 cut(s)	71
Bse3DI	GCAATG	1 cut(s)	303
BseDI	CCNNGG	2 cut(s)	448, 473
BseMI	GCAATG	1 cut(s)	303
BseMII	CTCAG	2 cut(s)	98, 176
BseXI	GCAGC	4 cut(s)	187, 214, 232, 293
Bsh1236I	CGCG	1 cut(s)	475
Bsh1285I	CGRYCG	1 cut(s)	351
BshFI	GGCC	3 cut(s)	38, 302, 447
BshNI	GGYRCC	1 cut(s)	74
BsiEI	CGRYCG	1 cut(s)	351
BsiSI	CCGG	2 cut(s)	29, 72
BsnI	GGCC	3 cut(s)	38, 302, 447
Bsp19I	CCATGG	1 cut(s)	448
BspACI	CCGC	6 cut(s)	347, 375, 393, 432, 473, 475
BspANI	GGCC	3 cut(s)	38, 302, 447
BspCNI	CTCAG	2 cut(s)	97, 175
BspFNI	CGCG	1 cut(s)	475
BspLI	GGNNCC	1 cut(s)	76
BspMAI	CTGCAG	1 cut(s)	311
BspT107I	GGYRCC	1 cut(s)	74
BsrDI	GCAATG	1 cut(s)	303
BssECI	CCNNGG	2 cut(s)	448, 473
BssT1I	CCWWGG	1 cut(s)	448
Bst4CI	ACNGT	1 cut(s)	103
Bst6I	CTCTTC	1 cut(s)	196
BstC8I	GCNNGC	3 cut(s)	238, 304, 470
BstDEI	CTNAG	2 cut(s)	84, 162
BstDSI	CCRYGG	2 cut(s)	448, 473
BstEII	GGTNACC	1 cut(s)	107
BstFNI	CGCG	1 cut(s)	475
BstMCI	CGRYCG	1 cut(s)	351
BstMWI	GCNNNNNNNGC	5 cut(s)	233, 242, 359, 432, 478
BstPI	GGTNACC	1 cut(s)	107
BstSFI	CTRYAG	1 cut(s)	307
BstUI	CGCG	1 cut(s)	475
BstV1I	GCAGC	4 cut(s)	187, 214, 232, 293
BsuRI	GGCC	3 cut(s)	38, 302, 447
BtgI	CCRYGG	2 cut(s)	448, 473
BtgZI	GCGATG	1 cut(s)	441
BtsI	GCAGTG	2 cut(s)	240, 316
BtsIMutI	CAGTG	3 cut(s)	226, 240, 316
Cac8I	GCNNGC	3 cut(s)	238, 304, 470
Cfr42I	CCGCGG	1 cut(s)	476
Csp6I	GTAC	2 cut(s)	99, 141
CspCI	CAANNNNNGTGG	2 cut(s)	202, 237
CviAII	CATG	2 cut(s)	416, 449
CviJI	RGCY	6 cut(s)	38, 178, 236, 302, 362, 447
CviKI_1	RGCY	6 cut(s)	38, 178, 236, 302, 362, 447
CviQI	GTAC	2 cut(s)	99, 141
DdeI	CTNAG	2 cut(s)	84, 162
EaeI	YGGCCR	1 cut(s)	445
Eam1104I	CTCTTC	1 cut(s)	196
EarI	CTCTTC	1 cut(s)	196
EciI	GGCGGA	1 cut(s)	390
Eco130I	CCWWGG	1 cut(s)	448
Eco91I	GGTNACC	1 cut(s)	107
EcoO65I	GGTNACC	1 cut(s)	107
EcoT14I	CCWWGG	1 cut(s)	448
ErhI	CCWWGG	1 cut(s)	448
FaeI	CATG	2 cut(s)	419, 452
FaiI	YATR	4 cut(s)	417, 441, 450, 465
FatI	CATG	2 cut(s)	415, 448
FauI	CCCGC	1 cut(s)	468
FblI	GTMKAC	1 cut(s)	15
Fnu4HI	GCNGC	6 cut(s)	176, 228, 246, 307, 433, 473
Fsp4HI	GCNGC	6 cut(s)	176, 228, 246, 307, 433, 473
FspBI	CTAG	2 cut(s)	150, 233
GluI	GCNGC	6 cut(s)	176, 228, 246, 307, 433, 473
HaeIII	GGCC	3 cut(s)	38, 302, 447
HapII	CCGG	2 cut(s)	29, 72
Hin1II	CATG	2 cut(s)	419, 452
HincII	GTYRAC	1 cut(s)	16
HindII	GTYRAC	1 cut(s)	16
HpaII	CCGG	2 cut(s)	29, 72
HphI	GGTGA	1 cut(s)	101
Hpy166II	GTNNAC	1 cut(s)	16
Hpy188I	TCNGA	4 cut(s)	46, 87, 165, 404
Hpy8I	GTNNAC	1 cut(s)	16
Hpy99I	CGWCG	1 cut(s)	17
HpyAV	CCTTC	1 cut(s)	28
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4V	TGCA	4 cut(s)	137, 296, 309, 481
HpyF10VI	GCNNNNNNNGC	5 cut(s)	233, 242, 359, 432, 478
HpyF3I	CTNAG	2 cut(s)	84, 162
Hsp92II	CATG	2 cut(s)	419, 452
KspI	CCGCGG	1 cut(s)	476
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	5 cut(s)	42, 85, 168, 222, 316
Lsp1109I	GCAGC	4 cut(s)	187, 214, 232, 293
MaeI	CTAG	2 cut(s)	150, 233
MaeIII	GTNAC	2 cut(s)	107, 157
MboII	GAAGA	1 cut(s)	213
MfeI	CAATTG	1 cut(s)	335
MluCI	AATT	4 cut(s)	19, 144, 183, 335
MmeI	TCCRAC	1 cut(s)	382
MnlI	CCTC	7 cut(s)	50, 52, 79, 93, 123, 313, 403
MseI	TTAA	1 cut(s)	192
MspA1I	CMGCKG	1 cut(s)	475
MspI	CCGG	2 cut(s)	29, 72
MunI	CAATTG	1 cut(s)	335
MvnI	CGCG	1 cut(s)	475
MwoI	GCNNNNNNNGC	5 cut(s)	233, 242, 359, 432, 478
NcoI	CCATGG	1 cut(s)	448
NlaIII	CATG	2 cut(s)	419, 452
NlaIV	GGNNCC	1 cut(s)	76
NmuCI	GTSAC	1 cut(s)	107
PcsI	WCGNNNNNNNCGW	1 cut(s)	29
PkrI	GCNGC	6 cut(s)	177, 229, 247, 308, 434, 474
PspEI	GGTNACC	1 cut(s)	107
PspN4I	GGNNCC	1 cut(s)	76
PstI	CTGCAG	1 cut(s)	311
RsaI	GTAC	2 cut(s)	100, 142
RsaNI	GTAC	2 cut(s)	99, 141
SacII	CCGCGG	1 cut(s)	476
SalI	GTCGAC	1 cut(s)	14
SaqAI	TTAA	1 cut(s)	192
SatI	GCNGC	6 cut(s)	176, 228, 246, 307, 433, 473
SetI	ASST	4 cut(s)	44, 238, 324, 364
SfcI	CTRYAG	1 cut(s)	307
Sfr303I	CCGCGG	1 cut(s)	476
SgrBI	CCGCGG	1 cut(s)	476
SpeI	ACTAGT	1 cut(s)	149
Sse9I	AATT	4 cut(s)	19, 144, 183, 335
SsiI	CCGC	6 cut(s)	347, 375, 393, 432, 473, 475
SspMI	CTAG	2 cut(s)	150, 233
StyI	CCWWGG	1 cut(s)	448
TaaI	ACNGT	1 cut(s)	103
TaqI	TCGA	1 cut(s)	15
TasI	AATT	4 cut(s)	19, 144, 183, 335
TatI	WGTACW	2 cut(s)	98, 140
TauI	GCSGC	2 cut(s)	435, 475
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TscAI	CASTG	3 cut(s)	226, 247, 316
TseFI	GTSAC	1 cut(s)	107
TseI	GCWGC	4 cut(s)	175, 227, 245, 306
Tsp45I	GTSAC	1 cut(s)	107
TspRI	CASTG	3 cut(s)	226, 247, 316
XmiI	GTMKAC	1 cut(s)	15
XspI	CTAG	2 cut(s)	150, 233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.