RLG00000036093
MYB Family

Alcohol dehydrogenase transcription factor Myb/SANT-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001994
Physical Location & Seq
Forward (+)
75700708 .. 75701702
995 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036093

Sequence Viewer

Length: 513 bp
ATGAGCTCCGTGACGGAGCCGCCGGCGGCGGTGGTGGCGAAGGAGGAGGAGGAGGTTTGTACACCATCATCAGGAGATCGAAATCCTCGGCCGTGGCCGCCGGAGAGTACCGGAAGGATCGCGAGGAGTGGAGCGATGGATGACCAATTCTGGAAATTTGTCGAGTCATTGGCCTTGGTTCAAGATAATGGAACAGATCATCAGCGCAATTCGCTTCCGGCGAAGGCCACCTCTAATGATGACAGAGGCATTACTTCCTCCGGTGCCACTCCTCATAAATCAAAGAGAAATGCAAGTGCAATTACTAGTCCTGTAACTCAGATACATAAGCAGCCGAAAATTAGTCTTAAATGGCGAAGAGTGGTGTTCAAAGTCAGTGGTGCTGCTCTAGCTGGCACTACTGCTAACAACATTGACCCAAAGATAACAATGCTGATTACGAGAGAAGTTGCAATGGCCTGCCACAGTAGGGTGGAGGTGGCAATTGTTGTTGGCGGTCGCAACTTTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AA_kinase Myb_DNA-bind_4

Protein Analysis

171

Amino Acids

18.29

Weight (kDa)

9.51

Isoelectric Point (pI)

55.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 263
AccII CGCG 1 cut(s) 122
AciI CCGC 5 cut(s) 20, 26, 29, 98, 495
AclWI GGATC 1 cut(s) 125
AcoI YGGCCR 2 cut(s) 89, 95
AcsI RAATTY 1 cut(s) 155
AfaI GTAC 2 cut(s) 61, 109
AfiI CCNNNNNNNGG 2 cut(s) 71, 469
AgsI TTSAA 2 cut(s) 182, 370
AhlI ACTAGT 1 cut(s) 305
AluBI AGCT 2 cut(s) 6, 392
AluI AGCT 2 cut(s) 6, 392
Alw21I GWGCWC 1 cut(s) 8
AlwI GGATC 1 cut(s) 125
AoxI GGCC 5 cut(s) 89, 95, 171, 225, 456
ApeKI GCWGC 2 cut(s) 331, 383
ApoI RAATTY 1 cut(s) 155
AspLEI GCGC 1 cut(s) 207
BanI GGYRCC 1 cut(s) 263
BanII GRGCYC 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 2 cut(s) 343, 370
BccI CCATC 2 cut(s) 73, 130
BceAI ACGGC 1 cut(s) 76
BcuI ACTAGT 1 cut(s) 305
BfaI CTAG 2 cut(s) 306, 389
BisI GCNGC 5 cut(s) 20, 27, 98, 332, 384
BlsI GCNGC 5 cut(s) 21, 28, 99, 333, 385
BmiI GGNNCC 2 cut(s) 18, 265
BsaBI GATNNNNATC 1 cut(s) 81
BsaJI CCNNGG 3 cut(s) 86, 92, 174
BsaWI WCCGGW 2 cut(s) 110, 260
Bsc4I CCNNNNNNNGG 2 cut(s) 71, 469
Bse118I RCCGGY 1 cut(s) 22
Bse3DI GCAATG 1 cut(s) 459
Bse8I GATNNNNATC 1 cut(s) 81
BseDI CCNNGG 3 cut(s) 86, 92, 174
BseGI GGATG 1 cut(s) 145
BseJI GATNNNNATC 1 cut(s) 81
BseLI CCNNNNNNNGG 2 cut(s) 71, 469
BseMI GCAATG 1 cut(s) 459
BseMII CTCAG 1 cut(s) 332
BseRI GAGGAG 5 cut(s) 59, 62, 65, 139, 261
BseX3I CGGCCG 1 cut(s) 89
BseXI GCAGC 2 cut(s) 343, 370
Bsh1236I CGCG 1 cut(s) 122
Bsh1285I CGRYCG 2 cut(s) 92, 499
BshFI GGCC 5 cut(s) 91, 97, 173, 227, 458
BshNI GGYRCC 1 cut(s) 263
BsiEI CGRYCG 2 cut(s) 92, 499
BsiHKAI GWGCWC 1 cut(s) 8
BsiSI CCGG 5 cut(s) 23, 101, 111, 218, 261
BslI CCNNNNNNNGG 2 cut(s) 71, 469
BsnI GGCC 5 cut(s) 91, 97, 173, 227, 458
Bsp1286I GDGCHC 1 cut(s) 8
Bsp1407I TGTACA 1 cut(s) 59
Bsp143I GATC 3 cut(s) 76, 117, 196
Bsp68I TCGCGA 1 cut(s) 122
BspACI CCGC 5 cut(s) 20, 26, 29, 98, 495
BspANI GGCC 5 cut(s) 91, 97, 173, 227, 458
BspCNI CTCAG 1 cut(s) 331
BspFNI CGCG 1 cut(s) 122
BspLI GGNNCC 2 cut(s) 18, 265
BspPI GGATC 1 cut(s) 125
BspT107I GGYRCC 1 cut(s) 263
BsrDI GCAATG 1 cut(s) 459
BsrFI RCCGGY 1 cut(s) 22
BsrGI TGTACA 1 cut(s) 59
BssAI RCCGGY 1 cut(s) 22
BssECI CCNNGG 3 cut(s) 86, 92, 174
BssMI GATC 3 cut(s) 76, 117, 196
BssT1I CCWWGG 1 cut(s) 174
Bst4CI ACNGT 1 cut(s) 467
Bst6I CTCTTC 1 cut(s) 352
BstAUI TGTACA 1 cut(s) 59
BstC8I GCNNGC 3 cut(s) 24, 394, 460
BstDEI CTNAG 1 cut(s) 318
BstDSI CCRYGG 1 cut(s) 92
BstF5I GGATG 1 cut(s) 145
BstFNI CGCG 1 cut(s) 122
BstHHI GCGC 1 cut(s) 207
BstKTI GATC 3 cut(s) 79, 120, 199
BstMBI GATC 3 cut(s) 76, 117, 196
BstMCI CGRYCG 2 cut(s) 92, 499
BstMWI GCNNNNNNNGC 5 cut(s) 35, 97, 211, 389, 507
BstUI CGCG 1 cut(s) 122
BstV1I GCAGC 2 cut(s) 343, 370
BstZI CGGCCG 1 cut(s) 89
BsuRI GGCC 5 cut(s) 91, 97, 173, 227, 458
BtgI CCRYGG 1 cut(s) 92
BtgZI GCGATG 1 cut(s) 149
BtsCI GGATG 1 cut(s) 145
BtsIMutI CAGTG 1 cut(s) 382
BtuMI TCGCGA 1 cut(s) 122
Cac8I GCNNGC 3 cut(s) 24, 394, 460
CfoI GCGC 1 cut(s) 207
Cfr10I RCCGGY 1 cut(s) 22
Csp6I GTAC 2 cut(s) 60, 108
CspCI CAANNNNNGTGG 2 cut(s) 358, 393
CviQI GTAC 2 cut(s) 60, 108
DdeI CTNAG 1 cut(s) 318
DpnI GATC 3 cut(s) 78, 119, 198
DpnII GATC 3 cut(s) 76, 117, 196
EaeI YGGCCR 2 cut(s) 89, 95
EagI CGGCCG 1 cut(s) 89
Eam1104I CTCTTC 1 cut(s) 352
EarI CTCTTC 1 cut(s) 352
Ecl136II GAGCTC 1 cut(s) 6
EclXI CGGCCG 1 cut(s) 89
Eco130I CCWWGG 1 cut(s) 174
Eco24I GRGCYC 1 cut(s) 8
Eco52I CGGCCG 1 cut(s) 89
Eco53kI GAGCTC 1 cut(s) 6
EcoICRI GAGCTC 1 cut(s) 6
EcoT14I CCWWGG 1 cut(s) 174
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 1 cut(s) 174
FaiI YATR 2 cut(s) 276, 327
Fnu4HI GCNGC 5 cut(s) 20, 27, 98, 332, 384
FokI GGATG 1 cut(s) 152
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 5 cut(s) 20, 27, 98, 332, 384
FspBI CTAG 2 cut(s) 306, 389
GlaI GCGC 1 cut(s) 206
GluI GCNGC 5 cut(s) 20, 27, 98, 332, 384
HaeIII GGCC 5 cut(s) 91, 97, 173, 227, 458
HapII CCGG 5 cut(s) 23, 101, 111, 218, 261
HhaI GCGC 1 cut(s) 207
Hin6I GCGC 1 cut(s) 205
HinP1I GCGC 1 cut(s) 205
HinfI GANTC 1 cut(s) 164
HpaII CCGG 5 cut(s) 23, 101, 111, 218, 261
Hpy166II GTNNAC 1 cut(s) 62
Hpy188I TCNGA 1 cut(s) 321
Hpy188III TCNNGA 4 cut(s) 72, 121, 151, 182
Hpy8I GTNNAC 1 cut(s) 62
HpyAV CCTTC 3 cut(s) 34, 108, 217
HpyCH4III ACNGT 1 cut(s) 467
HpyCH4V TGCA 3 cut(s) 293, 299, 452
HpyF10VI GCNNNNNNNGC 5 cut(s) 35, 97, 211, 389, 507
HpyF3I CTNAG 1 cut(s) 318
HspAI GCGC 1 cut(s) 205
KroI GCCGGC 1 cut(s) 22
KroNI GCCGGC 1 cut(s) 24
Kzo9I GATC 3 cut(s) 76, 117, 196
LmnI GCTCC 3 cut(s) 11, 16, 131
Lsp1109I GCAGC 2 cut(s) 343, 370
MaeI CTAG 2 cut(s) 306, 389
MaeIII GTNAC 2 cut(s) 10, 313
MalI GATC 3 cut(s) 78, 119, 198
MboI GATC 3 cut(s) 76, 117, 196
MboII GAAGA 1 cut(s) 369
MfeI CAATTG 1 cut(s) 483
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 6 cut(s) 146, 155, 208, 300, 339, 483
MlyI GAGTC 1 cut(s) 173
MreI CGCCGGCG 1 cut(s) 22
MroNI GCCGGC 1 cut(s) 22
MseI TTAA 1 cut(s) 348
MspI CCGG 5 cut(s) 23, 101, 111, 218, 261
MunI CAATTG 1 cut(s) 483
MvnI CGCG 1 cut(s) 122
MwoI GCNNNNNNNGC 5 cut(s) 35, 97, 211, 389, 507
NaeI GCCGGC 1 cut(s) 24
NdeII GATC 3 cut(s) 76, 117, 196
NgoMIV GCCGGC 1 cut(s) 22
NlaIV GGNNCC 2 cut(s) 18, 265
NmeAIII GCCGAG 1 cut(s) 67
NmuCI GTSAC 1 cut(s) 10
NruI TCGCGA 1 cut(s) 122
PcsI WCGNNNNNNNCGW 1 cut(s) 218
PdiI GCCGGC 1 cut(s) 24
PkrI GCNGC 5 cut(s) 21, 28, 99, 333, 385
PleI GAGTC 1 cut(s) 172
PpsI GAGTC 1 cut(s) 172
Psp124BI GAGCTC 1 cut(s) 8
PspN4I GGNNCC 2 cut(s) 18, 265
RruI TCGCGA 1 cut(s) 122
RsaI GTAC 2 cut(s) 61, 109
RsaNI GTAC 2 cut(s) 60, 108
SacI GAGCTC 1 cut(s) 8
SaqAI TTAA 1 cut(s) 348
SatI GCNGC 5 cut(s) 20, 27, 98, 332, 384
Sau3AI GATC 3 cut(s) 76, 117, 196
SchI GAGTC 1 cut(s) 173
SduI GDGCHC 1 cut(s) 8
SetI ASST 5 cut(s) 8, 57, 233, 394, 480
SgrAI CRCCGGYG 1 cut(s) 22
SpeI ACTAGT 1 cut(s) 305
Sse9I AATT 6 cut(s) 146, 155, 208, 300, 339, 483
SsiI CCGC 5 cut(s) 20, 26, 29, 98, 495
SspMI CTAG 2 cut(s) 306, 389
SstI GAGCTC 1 cut(s) 8
StyI CCWWGG 1 cut(s) 174
TaaI ACNGT 1 cut(s) 467
TaqI TCGA 2 cut(s) 79, 162
TasI AATT 6 cut(s) 146, 155, 208, 300, 339, 483
TatI WGTACW 1 cut(s) 59
TauI GCSGC 3 cut(s) 22, 29, 100
Tru1I TTAA 1 cut(s) 348
Tru9I TTAA 1 cut(s) 348
TscAI CASTG 1 cut(s) 382
TseFI GTSAC 1 cut(s) 10
TseI GCWGC 2 cut(s) 331, 383
Tsp45I GTSAC 1 cut(s) 10
TspGWI ACGGA 1 cut(s) 29
TspRI CASTG 1 cut(s) 382
XapI RAATTY 1 cut(s) 155
XspI CTAG 2 cut(s) 306, 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.