Rroxscaffold_3G00265600
MYB Family

Alcohol dehydrogenase transcription factor Myb/SANT-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
59003138 .. 59004059
922 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00265600.1

Sequence Viewer

Length: 423 bp
ATGGACAAGCTCACGCAGCCGAATGGGGGAAATCCGAGAGGCCGGGATTGGGAGGAGGTGGCCGTGATCGTGAGCCGGATGTCCGAGGCAAACCAAGAGCGTCGAGCGATCGTCGGCAATTCGCTTCCGGCGAAGGCCAACTCGATGATGACGAGAGGCATTACTTCCTCCGGTGCCACGCCTCGAAATCAAATAGTTCCATTAAATGAGTGTCGATATGTGTTTTGTGATTGCACAAATAACAATGCGATTGCGAGAGAAGTTGCAATGGCCTCGCCGCGGTGGGGTGGAGGTGGCAATTGTTGTTGGCGGTCGCAACTTTGGCTGATGGGTGTGGCGGATTTGGGGGTTTGGGCGGTGGGGTCGGAGCAGAGGGTCATAGAGATTGCGATGGCGGCGAGTATGACGGCCATGGTGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

140

Amino Acids

15.2

Weight (kDa)

7.61

Isoelectric Point (pI)

48.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 173
AccII CGCG 1 cut(s) 280
AciI CCGC 6 cut(s) 278, 280, 310, 338, 356, 395
AcoI YGGCCR 2 cut(s) 60, 408
AfiI CCNNNNNNNGG 4 cut(s) 26, 49, 279, 284
AluBI AGCT 1 cut(s) 10
AluI AGCT 1 cut(s) 10
AoxI GGCC 5 cut(s) 40, 60, 135, 270, 408
ApeKI GCWGC 1 cut(s) 16
AsuC2I CCSGG 1 cut(s) 44
BanI GGYRCC 1 cut(s) 173
BbvI GCAGC 1 cut(s) 28
BccI CCATC 2 cut(s) 322, 385
BceAI ACGGC 1 cut(s) 47
BcgI CGANNNNNNTGC 2 cut(s) 255, 289
BcnI CCSGG 1 cut(s) 44
BisI GCNGC 3 cut(s) 17, 278, 396
BlsI GCNGC 3 cut(s) 18, 279, 397
Bme1390I CCNGG 1 cut(s) 44
BmiI GGNNCC 1 cut(s) 175
BmrFI CCNGG 1 cut(s) 44
BpuMI CCSGG 1 cut(s) 44
BsaJI CCNNGG 3 cut(s) 84, 278, 411
BsaWI WCCGGW 1 cut(s) 170
Bsc4I CCNNNNNNNGG 4 cut(s) 26, 49, 279, 284
Bse3DI GCAATG 1 cut(s) 273
BseDI CCNNGG 3 cut(s) 84, 278, 411
BseGI GGATG 1 cut(s) 84
BseLI CCNNNNNNNGG 4 cut(s) 26, 49, 279, 284
BseMI GCAATG 1 cut(s) 273
BseRI GAGGAG 1 cut(s) 68
BseXI GCAGC 1 cut(s) 28
Bsh1236I CGCG 1 cut(s) 280
Bsh1285I CGRYCG 2 cut(s) 111, 314
BshFI GGCC 5 cut(s) 42, 62, 137, 272, 410
BshNI GGYRCC 1 cut(s) 173
BsiEI CGRYCG 2 cut(s) 111, 314
BsiSI CCGG 4 cut(s) 43, 76, 128, 171
BslI CCNNNNNNNGG 4 cut(s) 26, 49, 279, 284
BsnI GGCC 5 cut(s) 42, 62, 137, 272, 410
Bsp143I GATC 2 cut(s) 66, 108
Bsp19I CCATGG 1 cut(s) 411
BspACI CCGC 6 cut(s) 278, 280, 310, 338, 356, 395
BspANI GGCC 5 cut(s) 42, 62, 137, 272, 410
BspFNI CGCG 1 cut(s) 280
BspLI GGNNCC 1 cut(s) 175
BspT107I GGYRCC 1 cut(s) 173
BsrDI GCAATG 1 cut(s) 273
BssECI CCNNGG 3 cut(s) 84, 278, 411
BssMI GATC 2 cut(s) 66, 108
BssT1I CCWWGG 1 cut(s) 411
BstDSI CCRYGG 2 cut(s) 278, 411
BstF5I GGATG 1 cut(s) 84
BstFNI CGCG 1 cut(s) 280
BstKTI GATC 2 cut(s) 69, 111
BstMBI GATC 2 cut(s) 66, 108
BstMCI CGRYCG 2 cut(s) 111, 314
BstMWI GCNNNNNNNGC 3 cut(s) 16, 322, 395
BstSCI CCNGG 1 cut(s) 42
BstUI CGCG 1 cut(s) 280
BstV1I GCAGC 1 cut(s) 28
BsuRI GGCC 5 cut(s) 42, 62, 137, 272, 410
BtgI CCRYGG 2 cut(s) 278, 411
BtgZI GCGATG 1 cut(s) 404
BtsCI GGATG 1 cut(s) 84
Cfr42I CCGCGG 1 cut(s) 281
CseI GACGC 1 cut(s) 89
CviAII CATG 1 cut(s) 412
CviJI RGCY 9 cut(s) 10, 19, 42, 62, 75, 137, 272, 325, 410
CviKI_1 RGCY 9 cut(s) 10, 19, 42, 62, 75, 137, 272, 325, 410
DpnI GATC 2 cut(s) 68, 110
DpnII GATC 2 cut(s) 66, 108
EaeI YGGCCR 2 cut(s) 60, 408
EciI GGCGGA 1 cut(s) 353
Eco130I CCWWGG 1 cut(s) 411
EcoT14I CCWWGG 1 cut(s) 411
ErhI CCWWGG 1 cut(s) 411
FaeI CATG 1 cut(s) 415
FaiI YATR 4 cut(s) 219, 380, 404, 413
FatI CATG 1 cut(s) 411
Fnu4HI GCNGC 3 cut(s) 17, 278, 396
FokI GGATG 1 cut(s) 91
Fsp4HI GCNGC 3 cut(s) 17, 278, 396
GluI GCNGC 3 cut(s) 17, 278, 396
HaeIII GGCC 5 cut(s) 42, 62, 137, 272, 410
HapII CCGG 4 cut(s) 43, 76, 128, 171
HgaI GACGC 1 cut(s) 89
Hin1II CATG 1 cut(s) 415
HpaII CCGG 4 cut(s) 43, 76, 128, 171
Hpy188I TCNGA 3 cut(s) 36, 85, 367
Hpy188III TCNNGA 1 cut(s) 70
Hpy99I CGWCG 2 cut(s) 105, 116
HpyAV CCTTC 1 cut(s) 127
HpyCH4V TGCA 2 cut(s) 234, 266
HpyF10VI GCNNNNNNNGC 3 cut(s) 16, 322, 395
Hsp92II CATG 1 cut(s) 415
KspI CCGCGG 1 cut(s) 281
Kzo9I GATC 2 cut(s) 66, 108
LmnI GCTCC 1 cut(s) 367
LpnPI CCDG 4 cut(s) 56, 89, 141, 184
Lsp1109I GCAGC 1 cut(s) 28
MalI GATC 2 cut(s) 68, 110
MboI GATC 2 cut(s) 66, 108
MfeI CAATTG 1 cut(s) 298
MluCI AATT 2 cut(s) 118, 298
MmeI TCCRAC 1 cut(s) 345
MseI TTAA 1 cut(s) 203
MspA1I CMGCKG 1 cut(s) 280
MspI CCGG 4 cut(s) 43, 76, 128, 171
MspR9I CCNGG 1 cut(s) 44
MunI CAATTG 1 cut(s) 298
MvnI CGCG 1 cut(s) 280
MwoI GCNNNNNNNGC 3 cut(s) 16, 322, 395
NciI CCSGG 1 cut(s) 44
NcoI CCATGG 1 cut(s) 411
NdeII GATC 2 cut(s) 66, 108
NlaIII CATG 1 cut(s) 415
NlaIV GGNNCC 1 cut(s) 175
PcsI WCGNNNNNNNCGW 2 cut(s) 128, 149
PkrI GCNGC 3 cut(s) 18, 279, 397
Ple19I CGATCG 1 cut(s) 111
PspN4I GGNNCC 1 cut(s) 175
PvuI CGATCG 1 cut(s) 111
SacII CCGCGG 1 cut(s) 281
SaqAI TTAA 1 cut(s) 203
SatI GCNGC 3 cut(s) 17, 278, 396
Sau3AI GATC 2 cut(s) 66, 108
ScrFI CCNGG 1 cut(s) 44
SetI ASST 3 cut(s) 12, 60, 295
Sfr303I CCGCGG 1 cut(s) 281
SgrBI CCGCGG 1 cut(s) 281
Sse9I AATT 2 cut(s) 118, 298
SsiI CCGC 6 cut(s) 278, 280, 310, 338, 356, 395
StyD4I CCNGG 1 cut(s) 42
StyI CCWWGG 1 cut(s) 411
TaqI TCGA 4 cut(s) 103, 143, 184, 214
TasI AATT 2 cut(s) 118, 298
TauI GCSGC 2 cut(s) 280, 398
Tru1I TTAA 1 cut(s) 203
Tru9I TTAA 1 cut(s) 203
TseI GCWGC 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.