RchiOBHm_Chr5g0071181
MYB Family

Alcohol dehydrogenase transcription factor Myb/SANT-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0001994
Physical Location & Seq
Forward (+)
77079734 .. 77080388
655 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34629

Sequence Viewer

Length: 435 bp
ATGACCAATTCTGGAAATTCGCCGAGTCATTGGCCTTGGTTCATGATAATGGAGCAGATCGTCGGCAATTCTCTTCCGGCGAAGGCCACCTCTGATGATGACAAAGGCATTACTTCCTCCGGTGCTACGCCTAAGAAATTAAAGAGAAATGCAAGTGCAATTACTAGTCCTGTAACTCAGATAAATAAGCAGCCGAAAATTAGTCTTAAATGGCGAAGAGTGGTGTTCAAAGTCAGTGGTGCTGCTCTAGCTGCCACTGCTGCTAACAACATTTTGTATATATGCACTTCCATTAATTTGTCGAGTGAAATATGCACGATCATTGTTAATAGTCTGTTTTGTTGTATAACAATGCTGATTGCGAGAGAAGTTGTAATGGCCTACCGCAGTGGGGTGGAGGTTGCAATTGTTGTTGGAGGTCGCAACTTTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AA_kinase Myb_DNA-bind_4

Protein Analysis

144

Amino Acids

15.46

Weight (kDa)

9.7

Isoelectric Point (pI)

38.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 385
AcsI RAATTY 1 cut(s) 16
AfiI CCNNNNNNNGG 1 cut(s) 391
AgsI TTSAA 1 cut(s) 229
AhlI ACTAGT 1 cut(s) 164
AluBI AGCT 1 cut(s) 251
AluI AGCT 1 cut(s) 251
AoxI GGCC 3 cut(s) 32, 84, 378
ApeKI GCWGC 4 cut(s) 190, 242, 251, 260
ApoI RAATTY 1 cut(s) 16
AseI ATTAAT 1 cut(s) 294
BbvI GCAGC 4 cut(s) 202, 229, 238, 247
BcuI ACTAGT 1 cut(s) 164
BfaI CTAG 2 cut(s) 165, 248
BisI GCNGC 4 cut(s) 191, 243, 252, 261
BlsI GCNGC 4 cut(s) 192, 244, 253, 262
BsaJI CCNNGG 1 cut(s) 35
BsaWI WCCGGW 1 cut(s) 119
Bsc4I CCNNNNNNNGG 1 cut(s) 391
BseDI CCNNGG 1 cut(s) 35
BseLI CCNNNNNNNGG 1 cut(s) 391
BseMII CTCAG 1 cut(s) 191
BseXI GCAGC 4 cut(s) 202, 229, 238, 247
BshFI GGCC 3 cut(s) 34, 86, 380
BsiSI CCGG 2 cut(s) 77, 120
BslI CCNNNNNNNGG 1 cut(s) 391
BsnI GGCC 3 cut(s) 34, 86, 380
Bsp143I GATC 2 cut(s) 57, 318
BspACI CCGC 1 cut(s) 385
BspANI GGCC 3 cut(s) 34, 86, 380
BspCNI CTCAG 1 cut(s) 190
BspHI TCATGA 1 cut(s) 42
BssECI CCNNGG 1 cut(s) 35
BssMI GATC 2 cut(s) 57, 318
BssT1I CCWWGG 1 cut(s) 35
Bst6I CTCTTC 2 cut(s) 78, 211
BstDEI CTNAG 2 cut(s) 132, 177
BstKTI GATC 2 cut(s) 60, 321
BstMBI GATC 2 cut(s) 57, 318
BstMWI GCNNNNNNNGC 5 cut(s) 248, 251, 257, 260, 429
BstV1I GCAGC 4 cut(s) 202, 229, 238, 247
BsuRI GGCC 3 cut(s) 34, 86, 380
BtsI GCAGTG 2 cut(s) 255, 394
BtsIMutI CAGTG 3 cut(s) 241, 255, 394
CciI TCATGA 1 cut(s) 42
CspCI CAANNNNNGTGG 2 cut(s) 217, 252
CviAII CATG 1 cut(s) 43
CviJI RGCY 6 cut(s) 34, 86, 193, 251, 380, 432
CviKI_1 RGCY 6 cut(s) 34, 86, 193, 251, 380, 432
DdeI CTNAG 2 cut(s) 132, 177
DpnI GATC 2 cut(s) 59, 320
DpnII GATC 2 cut(s) 57, 318
Eam1104I CTCTTC 2 cut(s) 78, 211
EarI CTCTTC 2 cut(s) 78, 211
Eco130I CCWWGG 1 cut(s) 35
EcoT14I CCWWGG 1 cut(s) 35
ErhI CCWWGG 1 cut(s) 35
FaeI CATG 1 cut(s) 46
FaiI YATR 6 cut(s) 44, 279, 281, 283, 313, 347
FatI CATG 1 cut(s) 42
Fnu4HI GCNGC 4 cut(s) 191, 243, 252, 261
Fsp4HI GCNGC 4 cut(s) 191, 243, 252, 261
FspBI CTAG 2 cut(s) 165, 248
GluI GCNGC 4 cut(s) 191, 243, 252, 261
HaeIII GGCC 3 cut(s) 34, 86, 380
HapII CCGG 2 cut(s) 77, 120
Hin1II CATG 1 cut(s) 46
HinfI GANTC 1 cut(s) 25
HpaII CCGG 2 cut(s) 77, 120
Hpy188I TCNGA 2 cut(s) 94, 180
Hpy188III TCNNGA 2 cut(s) 12, 43
Hpy99I CGWCG 1 cut(s) 65
HpyAV CCTTC 1 cut(s) 76
HpyCH4V TGCA 5 cut(s) 152, 158, 285, 315, 404
HpyF10VI GCNNNNNNNGC 5 cut(s) 248, 251, 257, 260, 429
HpyF3I CTNAG 2 cut(s) 132, 177
Hsp92II CATG 1 cut(s) 46
Kzo9I GATC 2 cut(s) 57, 318
LmnI GCTCC 1 cut(s) 52
LpnPI CCDG 3 cut(s) 90, 133, 183
Lsp1109I GCAGC 4 cut(s) 202, 229, 238, 247
MaeI CTAG 2 cut(s) 165, 248
MaeIII GTNAC 1 cut(s) 172
MalI GATC 2 cut(s) 59, 320
MboI GATC 2 cut(s) 57, 318
MboII GAAGA 2 cut(s) 65, 228
MfeI CAATTG 1 cut(s) 405
MluCI AATT 8 cut(s) 7, 16, 67, 137, 159, 198, 295, 405
MlyI GAGTC 1 cut(s) 34
MmeI TCCRAC 1 cut(s) 394
MnlI CCTC 4 cut(s) 100, 127, 391, 410
MseI TTAA 4 cut(s) 140, 207, 294, 327
MslI CAYNNNNRTG 1 cut(s) 47
MspI CCGG 2 cut(s) 77, 120
MunI CAATTG 1 cut(s) 405
MwoI GCNNNNNNNGC 5 cut(s) 248, 251, 257, 260, 429
NdeII GATC 2 cut(s) 57, 318
NlaIII CATG 1 cut(s) 46
NmeAIII GCCGAG 1 cut(s) 48
PagI TCATGA 1 cut(s) 42
PkrI GCNGC 4 cut(s) 192, 244, 253, 262
PleI GAGTC 1 cut(s) 33
PpsI GAGTC 1 cut(s) 33
PshBI ATTAAT 1 cut(s) 294
RseI CAYNNNNRTG 1 cut(s) 47
SaqAI TTAA 4 cut(s) 140, 207, 294, 327
SatI GCNGC 4 cut(s) 191, 243, 252, 261
Sau3AI GATC 2 cut(s) 57, 318
SchI GAGTC 1 cut(s) 34
SetI ASST 4 cut(s) 92, 253, 402, 421
SmiMI CAYNNNNRTG 1 cut(s) 47
SpeI ACTAGT 1 cut(s) 164
Sse9I AATT 8 cut(s) 7, 16, 67, 137, 159, 198, 295, 405
SsiI CCGC 1 cut(s) 385
SspMI CTAG 2 cut(s) 165, 248
StyI CCWWGG 1 cut(s) 35
TaqI TCGA 1 cut(s) 302
TasI AATT 8 cut(s) 7, 16, 67, 137, 159, 198, 295, 405
Tru1I TTAA 4 cut(s) 140, 207, 294, 327
Tru9I TTAA 4 cut(s) 140, 207, 294, 327
TscAI CASTG 3 cut(s) 241, 262, 394
TseI GCWGC 4 cut(s) 190, 242, 251, 260
TspDTI ATGAA 1 cut(s) 31
TspRI CASTG 3 cut(s) 241, 262, 394
VspI ATTAAT 1 cut(s) 294
XapI RAATTY 1 cut(s) 16
XspI CTAG 2 cut(s) 165, 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.