RLG00000015608
MYB Family

Alcohol dehydrogenase transcription factor Myb/SANT-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001994
Physical Location & Seq
Forward (+)
135031 .. 136936
1906 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015608

Sequence Viewer

Length: 861 bp
ATGGATCAGAACGATGTCTCGTCGAAGATAAAAGACCAGTCTGATAAGCTCAGCGACAGAGCCGGCGGAGGCGGTAGTGGCGAAGGAGGAGGAGGACGTTCGTACACCATCATCAAGAGATCGAAATCCTCAGCCGTGGCCGCCGGAGAGTACTGGAAAGATCGCGAGGAGTGGAGCGACGGCGCAATCGCTTGCCTTCTCGATGCATACCTGGACAAGTTCACGCAGCTGAATTGGGGAAATCTGAGAGGCCGGGATTGGGATGAGGTGGCCGTGATCGTGAGCCAGATGTCCGAGGCAAACCAAGAGCATCGTCGGCGCAATTGGCTTTCGGCGAAGGCCACCTCTGATGATGATAGAGACATTACTTCTTCCGGTGCCACTCCTCAGAAATCAAAGAGAAATGCAAGTGCAATTACTAGTCCTGTAACTCAGATACATAAGCAGCCTAAAATTAGTCTTAAATGGAGAAGAGTGGTGTTCAAAGTCATTGGTGCTACTCTAGCTATCACTGCTGCTAACAACATTGACCCAAAGATAACAATGCTGATCGCGAGAGAAGTTGCAATGGCCTGCCACAGTAGGGTGGAGGTAATGATGTGGCAATTGTTGTTGGCGGTCACAACTTGGGTTGATGGGTGTGGTGGATTTGGAGGTTTGGGTGGTGGGGTCGGAGCGGAAGGTCATGGAGATTGCGATGGCGGCGAGTATGACAGCCATGGTGGAGTAGAGTATGGCGTGCCAGCGGGTGCAGTAGGAAGAAGAAGAAGAAGAAGACGCCATTGTTGGTTCAGTGAAGGTTCTGGTGTGGTCATGGTTCCAAATACTTCCAGCCTAATCGCACCTCGATTGCGTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AA_kinase Myb_DNA-bind_4

Protein Analysis

287

Amino Acids

30.95

Weight (kDa)

9.09

Isoelectric Point (pI)

55.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 377
AccBSI CCGCTC 1 cut(s) 677
AccII CGCG 2 cut(s) 165, 554
AciI CCGC 7 cut(s) 66, 72, 141, 617, 677, 702, 746
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 2 cut(s) 138, 270
AcyI GRCGYC 1 cut(s) 778
AfaI GTAC 2 cut(s) 104, 152
AfiI CCNNNNNNNGG 2 cut(s) 259, 583
AgsI TTSAA 1 cut(s) 484
AhlI ACTAGT 1 cut(s) 419
AjnI CCWGG 1 cut(s) 210
AluBI AGCT 3 cut(s) 49, 229, 506
AluI AGCT 3 cut(s) 49, 229, 506
Alw26I GTCTC 2 cut(s) 22, 354
AlwI GGATC 1 cut(s) 12
AoxI GGCC 5 cut(s) 138, 250, 270, 339, 570
ApeKI GCWGC 3 cut(s) 226, 445, 515
AspLEI GCGC 2 cut(s) 185, 321
AsuC2I CCSGG 1 cut(s) 254
BanI GGYRCC 1 cut(s) 377
BbsI GAAGAC 1 cut(s) 781
BbvCI CCTCAGC 1 cut(s) 130
BbvI GCAGC 3 cut(s) 238, 457, 502
BccI CCATC 3 cut(s) 116, 629, 692
BceAI ACGGC 3 cut(s) 119, 196, 257
BciT130I CCWGG 1 cut(s) 212
BcnI CCSGG 1 cut(s) 254
BcoDI GTCTC 2 cut(s) 22, 354
BcuI ACTAGT 1 cut(s) 419
BfaI CTAG 2 cut(s) 420, 503
BisI GCNGC 5 cut(s) 141, 227, 446, 516, 703
BlpI GCTNAGC 1 cut(s) 50
BlsI GCNGC 5 cut(s) 142, 228, 447, 517, 704
BmcAI AGTACT 1 cut(s) 152
Bme1390I CCNGG 2 cut(s) 212, 254
BmiI GGNNCC 2 cut(s) 379, 819
BmrFI CCNGG 2 cut(s) 212, 254
BmsI GCATC 2 cut(s) 193, 319
BpiI GAAGAC 1 cut(s) 781
Bpu10I CCTNAGC 1 cut(s) 130
Bpu1102I GCTNAGC 1 cut(s) 50
BpuMI CCSGG 1 cut(s) 254
BsaBI GATNNNNATC 1 cut(s) 124
BsaHI GRCGYC 1 cut(s) 778
BsaJI CCNNGG 3 cut(s) 135, 294, 718
BsaWI WCCGGW 1 cut(s) 374
Bsc4I CCNNNNNNNGG 2 cut(s) 259, 583
Bse118I RCCGGY 1 cut(s) 62
Bse1I ACTGG 2 cut(s) 37, 158
Bse3DI GCAATG 1 cut(s) 573
Bse8I GATNNNNATC 1 cut(s) 124
BseBI CCWGG 1 cut(s) 212
BseDI CCNNGG 3 cut(s) 135, 294, 718
BseGI GGATG 1 cut(s) 268
BseJI GATNNNNATC 1 cut(s) 124
BseLI CCNNNNNNNGG 2 cut(s) 259, 583
BseMI GCAATG 1 cut(s) 573
BseMII CTCAG 5 cut(s) 64, 144, 236, 401, 446
BseNI ACTGG 2 cut(s) 37, 158
BseRI GAGGAG 4 cut(s) 102, 105, 182, 375
BseXI GCAGC 3 cut(s) 238, 457, 502
BsgI GTGCAG 1 cut(s) 771
Bsh1236I CGCG 2 cut(s) 165, 554
BshFI GGCC 5 cut(s) 140, 252, 272, 341, 572
BshNI GGYRCC 1 cut(s) 377
BsiSI CCGG 4 cut(s) 63, 144, 253, 375
BslI CCNNNNNNNGG 2 cut(s) 259, 583
BsmAI GTCTC 2 cut(s) 22, 354
BsnI GGCC 5 cut(s) 140, 252, 272, 341, 572
Bsp143I GATC 5 cut(s) 4, 119, 160, 276, 549
Bsp1720I GCTNAGC 1 cut(s) 50
Bsp19I CCATGG 1 cut(s) 718
Bsp68I TCGCGA 2 cut(s) 165, 554
BspACI CCGC 7 cut(s) 66, 72, 141, 617, 677, 702, 746
BspANI GGCC 5 cut(s) 140, 252, 272, 341, 572
BspCNI CTCAG 5 cut(s) 63, 143, 237, 400, 445
BspFNI CGCG 2 cut(s) 165, 554
BspLI GGNNCC 2 cut(s) 379, 819
BspPI GGATC 1 cut(s) 12
BspT107I GGYRCC 1 cut(s) 377
BsrBI CCGCTC 1 cut(s) 677
BsrDI GCAATG 1 cut(s) 573
BsrFI RCCGGY 1 cut(s) 62
BsrI ACTGG 2 cut(s) 37, 158
BssAI RCCGGY 1 cut(s) 62
BssECI CCNNGG 3 cut(s) 135, 294, 718
BssMI GATC 5 cut(s) 4, 119, 160, 276, 549
BssNI GRCGYC 1 cut(s) 778
BssT1I CCWWGG 1 cut(s) 718
Bst2UI CCWGG 1 cut(s) 212
Bst4CI ACNGT 1 cut(s) 581
Bst6I CTCTTC 1 cut(s) 466
BstACI GRCGYC 1 cut(s) 778
BstC8I GCNNGC 6 cut(s) 64, 193, 574, 740, 744, 855
BstDEI CTNAG 6 cut(s) 50, 130, 245, 387, 432, 858
BstDSI CCRYGG 2 cut(s) 135, 718
BstF5I GGATG 1 cut(s) 268
BstFNI CGCG 2 cut(s) 165, 554
BstHHI GCGC 2 cut(s) 185, 321
BstKTI GATC 5 cut(s) 7, 122, 163, 279, 552
BstMAI GTCTC 2 cut(s) 22, 354
BstMBI GATC 5 cut(s) 4, 119, 160, 276, 549
BstMWI GCNNNNNNNGC 7 cut(s) 78, 140, 316, 325, 503, 512, 702
BstNI CCWGG 1 cut(s) 212
BstSCI CCNGG 2 cut(s) 210, 252
BstUI CGCG 2 cut(s) 165, 554
BstV1I GCAGC 3 cut(s) 238, 457, 502
BstV2I GAAGAC 1 cut(s) 781
BsuRI GGCC 5 cut(s) 140, 252, 272, 341, 572
BtgI CCRYGG 2 cut(s) 135, 718
BtgZI GCGATG 1 cut(s) 711
BtsCI GGATG 1 cut(s) 268
BtsI GCAGTG 1 cut(s) 510
BtsIMutI CAGTG 2 cut(s) 510, 799
BtuMI TCGCGA 2 cut(s) 165, 554
Cac8I GCNNGC 6 cut(s) 64, 193, 574, 740, 744, 855
CfoI GCGC 2 cut(s) 185, 321
Cfr10I RCCGGY 1 cut(s) 62
CseI GACGC 1 cut(s) 786
Csp6I GTAC 2 cut(s) 103, 151
CviAII CATG 3 cut(s) 686, 719, 814
CviQI GTAC 2 cut(s) 103, 151
DdeI CTNAG 6 cut(s) 50, 130, 245, 387, 432, 858
DpnI GATC 5 cut(s) 6, 121, 162, 278, 551
DpnII GATC 5 cut(s) 4, 119, 160, 276, 549
EaeI YGGCCR 2 cut(s) 138, 270
Eam1104I CTCTTC 1 cut(s) 466
EarI CTCTTC 1 cut(s) 466
EciI GGCGGA 1 cut(s) 81
Eco130I CCWWGG 1 cut(s) 718
EcoRII CCWGG 1 cut(s) 210
EcoT14I CCWWGG 1 cut(s) 718
EcoT22I ATGCAT 1 cut(s) 208
ErhI CCWWGG 1 cut(s) 718
FaeI CATG 3 cut(s) 689, 722, 817
FaiI YATR 7 cut(s) 208, 441, 687, 711, 720, 735, 815
FatI CATG 3 cut(s) 685, 718, 813
FauI CCCGC 1 cut(s) 739
Fnu4HI GCNGC 5 cut(s) 141, 227, 446, 516, 703
FokI GGATG 1 cut(s) 275
Fsp4HI GCNGC 5 cut(s) 141, 227, 446, 516, 703
FspBI CTAG 2 cut(s) 420, 503
GlaI GCGC 2 cut(s) 184, 320
GluI GCNGC 5 cut(s) 141, 227, 446, 516, 703
HaeIII GGCC 5 cut(s) 140, 252, 272, 341, 572
HapII CCGG 4 cut(s) 63, 144, 253, 375
HgaI GACGC 1 cut(s) 786
HhaI GCGC 2 cut(s) 185, 321
Hin1I GRCGYC 1 cut(s) 778
Hin1II CATG 3 cut(s) 689, 722, 817
Hin6I GCGC 2 cut(s) 183, 319
HinP1I GCGC 2 cut(s) 183, 319
HpaII CCGG 4 cut(s) 63, 144, 253, 375
Hpy166II GTNNAC 2 cut(s) 105, 222
Hpy188I TCNGA 8 cut(s) 9, 43, 246, 295, 349, 390, 435, 674
Hpy188III TCNNGA 5 cut(s) 115, 164, 200, 280, 553
Hpy8I GTNNAC 2 cut(s) 105, 222
Hpy99I CGWCG 3 cut(s) 25, 182, 318
HpyAV CCTTC 5 cut(s) 77, 206, 331, 674, 791
HpyCH4III ACNGT 1 cut(s) 581
HpyCH4IV ACGT 1 cut(s) 97
HpyCH4V TGCA 5 cut(s) 206, 407, 413, 566, 752
HpyF10VI GCNNNNNNNGC 7 cut(s) 78, 140, 316, 325, 503, 512, 702
HpyF3I CTNAG 6 cut(s) 50, 130, 245, 387, 432, 858
HpySE526I ACGT 1 cut(s) 97
Hsp92I GRCGYC 1 cut(s) 778
Hsp92II CATG 3 cut(s) 689, 722, 817
HspAI GCGC 2 cut(s) 183, 319
KroI GCCGGC 1 cut(s) 62
KroNI GCCGGC 1 cut(s) 64
Kzo9I GATC 5 cut(s) 4, 119, 160, 276, 549
LmnI GCTCC 2 cut(s) 174, 674
Lsp1109I GCAGC 3 cut(s) 238, 457, 502
LweI GCATC 2 cut(s) 193, 319
MaeI CTAG 2 cut(s) 420, 503
MaeII ACGT 1 cut(s) 97
MaeIII GTNAC 2 cut(s) 427, 619
MalI GATC 5 cut(s) 6, 121, 162, 278, 551
MbiI CCGCTC 1 cut(s) 677
MboI GATC 5 cut(s) 4, 119, 160, 276, 549
MboII GAAGA 9 cut(s) 37, 363, 483, 771, 774, 777, 780, 783, 786
MfeI CAATTG 2 cut(s) 322, 605
MluCI AATT 5 cut(s) 232, 322, 414, 453, 605
MmeI TCCRAC 1 cut(s) 652
Mph1103I ATGCAT 1 cut(s) 208
MroNI GCCGGC 1 cut(s) 62
MseI TTAA 1 cut(s) 462
MspA1I CMGCKG 2 cut(s) 229, 746
MspI CCGG 4 cut(s) 63, 144, 253, 375
MspR9I CCNGG 2 cut(s) 212, 254
MunI CAATTG 2 cut(s) 322, 605
MvaI CCWGG 1 cut(s) 212
MvnI CGCG 2 cut(s) 165, 554
MwoI GCNNNNNNNGC 7 cut(s) 78, 140, 316, 325, 503, 512, 702
NaeI GCCGGC 1 cut(s) 64
NciI CCSGG 1 cut(s) 254
NcoI CCATGG 1 cut(s) 718
NdeII GATC 5 cut(s) 4, 119, 160, 276, 549
NgoMIV GCCGGC 1 cut(s) 62
NlaIII CATG 3 cut(s) 689, 722, 817
NlaIV GGNNCC 2 cut(s) 379, 819
NmuCI GTSAC 1 cut(s) 619
NruI TCGCGA 2 cut(s) 165, 554
NsiI ATGCAT 1 cut(s) 208
PdiI GCCGGC 1 cut(s) 64
PkrI GCNGC 5 cut(s) 142, 228, 447, 517, 704
Psp6I CCWGG 1 cut(s) 210
PspGI CCWGG 1 cut(s) 210
PspN4I GGNNCC 2 cut(s) 379, 819
PvuII CAGCTG 1 cut(s) 229
RruI TCGCGA 2 cut(s) 165, 554
RsaI GTAC 2 cut(s) 104, 152
RsaNI GTAC 2 cut(s) 103, 151
SaqAI TTAA 1 cut(s) 462
SatI GCNGC 5 cut(s) 141, 227, 446, 516, 703
Sau3AI GATC 5 cut(s) 4, 119, 160, 276, 549
ScaI AGTACT 1 cut(s) 152
ScrFI CCNGG 2 cut(s) 212, 254
SfaNI GCATC 2 cut(s) 193, 319
SpeI ACTAGT 1 cut(s) 419
Sse9I AATT 5 cut(s) 232, 322, 414, 453, 605
SsiI CCGC 7 cut(s) 66, 72, 141, 617, 677, 702, 746
SspMI CTAG 2 cut(s) 420, 503
StyD4I CCNGG 2 cut(s) 210, 252
StyI CCWWGG 1 cut(s) 718
TaaI ACNGT 1 cut(s) 581
TaiI ACGT 1 cut(s) 100
TaqI TCGA 4 cut(s) 23, 122, 201, 847
TasI AATT 5 cut(s) 232, 322, 414, 453, 605
TatI WGTACW 1 cut(s) 150
TauI GCSGC 2 cut(s) 143, 705
Tru1I TTAA 1 cut(s) 462
Tru9I TTAA 1 cut(s) 462
TscAI CASTG 2 cut(s) 517, 799
TseFI GTSAC 1 cut(s) 619
TseI GCWGC 3 cut(s) 226, 445, 515
Tsp45I GTSAC 1 cut(s) 619
TspRI CASTG 2 cut(s) 517, 799
XspI CTAG 2 cut(s) 420, 503
ZrmI AGTACT 1 cut(s) 152
Zsp2I ATGCAT 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.